Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Forward (+)

55420283 .. 55423045

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGAGGTGGCGTTTGATCGGTGGAGGATGCCGGATCCGAGCAACAAGTCGAGATCGCAGCTGCTTGGTGACGGACGCGGCGGACATATTGAGGTCATTCTACATGTAGAGCTTCCCGCCGGTGAACGACCGGGGTCGAAGCACGAATTGACCTTGATTTGGCTCGGGCGGAGGTCACATGTTCGATTGGCGGACCGGGCCGGGAAGGCTGAGAATGAGCTTTCGGTGAGCGATGTGGTGGATGTAATGAGCGACGACGAGCCTAGAAACGATGTGGCGGAGTCGAAGGTCACCGAAGACGAATTGAAGAACGGTGTTGTGGAGATGGTTATGGATAATGAGCAAAACGTTGGGTCCGTTGAGCGAATGGCGATAAGAATTGAAGAACAGTTCGATAGTGGAAAAGGAGGAAAACTTGGTTTGCTGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

4.94

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	7 cut(s)	5, 81, 84, 120, 172, 194, 281
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	2 cut(s)	32, 45
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	2 cut(s)	106, 181
AgsI	TTSAA	2 cut(s)	310, 386
AluBI	AGCT	3 cut(s)	64, 115, 223
AluI	AGCT	3 cut(s)	64, 115, 223
AlwI	GGATC	2 cut(s)	32, 45
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	61, 64, 427
AspS9I	GGNCC	3 cut(s)	196, 201, 357
AsuC2I	CCSGG	3 cut(s)	135, 200, 205
AsuHPI	GGTGA	4 cut(s)	83, 137, 241, 286
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	196, 357
BamHI	GGATCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	51, 73, 414
BccI	CCATC	1 cut(s)	322
BcnI	CCSGG	3 cut(s)	135, 200, 205
BfaI	CTAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	62, 65, 82, 428
BlsI	GCNGC	4 cut(s)	63, 66, 83, 429
Bme1390I	CCNGG	3 cut(s)	135, 200, 205
Bme18I	GGWCC	2 cut(s)	196, 357
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	196, 201, 357
BmiI	GGNNCC	2 cut(s)	39, 358
BmrFI	CCNGG	3 cut(s)	135, 200, 205
BmsI	GCATC	1 cut(s)	21
BoxI	GACNNNNGTC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	306
BpuMI	CCSGG	3 cut(s)	135, 200, 205
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	2 cut(s)	36, 250
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	51, 73, 414
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	35, 123, 134, 199, 204
BslI	CCNNNNNNNGG	1 cut(s)	162
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	19, 37, 56
BspACI	CCGC	7 cut(s)	5, 81, 84, 120, 172, 194, 281
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	39, 358
BspPI	GGATC	2 cut(s)	32, 45
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	3 cut(s)	19, 37, 56
Bst4CI	ACNGT	2 cut(s)	317, 393
BstDEI	CTNAG	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	36, 250
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	22, 40, 59
BstMBI	GATC	3 cut(s)	19, 37, 56
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 200, 209
BstNSI	RCATGY	2 cut(s)	110, 185
BstPAI	GACNNNNGTC	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	292
BstSCI	CCNGG	3 cut(s)	133, 198, 203
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	51, 73, 414
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	36, 250
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	196, 201, 357
CpoI	CGGWCCG	1 cut(s)	196
CseI	GACGC	1 cut(s)	87
CspI	CGGWCCG	1 cut(s)	196
CviAII	CATG	2 cut(s)	107, 182
CviJI	RGCY	7 cut(s)	64, 115, 166, 203, 212, 223, 265
CviKI_1	RGCY	7 cut(s)	64, 115, 166, 203, 212, 223, 265
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	21, 39, 58
DpnII	GATC	3 cut(s)	19, 37, 56
EciI	GGCGGA	5 cut(s)	20, 99, 187, 209, 296
Eco47I	GGWCC	2 cut(s)	196, 357
Eco88I	CYCGRG	1 cut(s)	167
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
FaeI	CATG	2 cut(s)	110, 185
FaiI	YATR	4 cut(s)	90, 108, 183, 335
FatI	CATG	2 cut(s)	106, 181
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	62, 65, 82, 428
FokI	GGATG	2 cut(s)	43, 257
Fsp4HI	GCNGC	4 cut(s)	62, 65, 82, 428
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	4 cut(s)	62, 65, 82, 428
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	5 cut(s)	35, 123, 134, 199, 204
HgaI	GACGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	110, 185
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	5 cut(s)	35, 123, 134, 199, 204
HphI	GGTGA	4 cut(s)	83, 137, 241, 286
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyAV	CCTTC	2 cut(s)	202, 283
HpyCH4III	ACNGT	2 cut(s)	317, 393
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 200, 209
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	110, 185
Kzo9I	GATC	3 cut(s)	19, 37, 56
LpnPI	CCDG	5 cut(s)	48, 136, 147, 212, 217
Lsp1109I	GCAGC	3 cut(s)	51, 73, 414
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	71, 177, 292
MalI	GATC	3 cut(s)	21, 39, 58
MboI	GATC	3 cut(s)	19, 37, 56
MboII	GAAGA	3 cut(s)	311, 322, 398
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	3 cut(s)	149, 305, 381
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	21, 88, 168, 404
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	5 cut(s)	35, 123, 134, 199, 204
MspR9I	CCNGG	3 cut(s)	135, 200, 205
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	11, 200, 209
NciI	CCSGG	3 cut(s)	135, 200, 205
NdeII	GATC	3 cut(s)	19, 37, 56
NlaIII	CATG	2 cut(s)	110, 185
NlaIV	GGNNCC	2 cut(s)	39, 358
NmuCI	GTSAC	3 cut(s)	71, 177, 292
NspI	RCATGY	2 cut(s)	110, 185
PciI	ACATGT	2 cut(s)	106, 181
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	63, 66, 83, 429
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	2 cut(s)	106, 181
PshAI	GACNNNNGTC	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	351
PspEI	GGTNACC	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	39, 358
PspPI	GGNCC	3 cut(s)	196, 201, 357
PsuI	RGATCY	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	64
Rsr2I	CGGWCCG	1 cut(s)	196
RsrII	CGGWCCG	1 cut(s)	196
SatI	GCNGC	4 cut(s)	62, 65, 82, 428
Sau3AI	GATC	3 cut(s)	19, 37, 56
Sau96I	GGNCC	3 cut(s)	196, 201, 357
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	135, 200, 205
SetI	ASST	9 cut(s)	12, 66, 99, 117, 158, 179, 225, 294, 354
SfaNI	GCATC	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	196, 357
Sse9I	AATT	3 cut(s)	149, 305, 381
SsiI	CCGC	7 cut(s)	5, 81, 84, 120, 172, 194, 281
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	133, 198, 203
TaaI	ACNGT	2 cut(s)	317, 393
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	5 cut(s)	53, 140, 187, 287, 396
TasI	AATT	3 cut(s)	149, 305, 381
TauI	GCSGC	1 cut(s)	84
TseFI	GTSAC	3 cut(s)	71, 177, 292
TseI	GCWGC	3 cut(s)	61, 64, 427
Tsp45I	GTSAC	3 cut(s)	71, 177, 292
TspGWI	ACGGA	2 cut(s)	90, 349
VpaK11BI	GGWCC	2 cut(s)	196, 357
XceI	RCATGY	2 cut(s)	110, 185
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.