Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Reverse (-)

44491132 .. 44491691

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGGAGGCGCCGATCGAGTGGTTCTGCGTCGCCGGAGAAGGCGCCGATGAAGACCGAAACAAAGGAGGTGTTTTCCGGGTCACCGATGAGGCCTCGACGGTGATTGCGCGACTCATCGTTTGCGGCGGCGAGGGGCGAGATGGCGGAGGTGGCGCGGAGGTCACCTGTTCGTTTGGCTGGACCCGGGCTAGGAAGGCTGAGAATGAGCTTCCGGTGAGCGATGTGGTGGATGTAATGAGCGACGACGAGCCTAGAAACGATGTGGCGGAGTCGAAGGTCACCGAAGATGAATTGAAGAACGGTGTTGTGGAGATGGTTATGGATAATGAACAAAACGTTGGGTCTGTTGGTAACGAAGATGAGGCAGTAGACACATTATTGGCCCCCAGTAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

134

Amino Acids

14.22

Weight (kDa)

4.09

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 44
AccI	GTMKAC	2 cut(s)	372, 394
AccII	CGCG	2 cut(s)	112, 158
AciI	CCGC	5 cut(s)	126, 129, 147, 158, 269
AclI	AACGTT	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	11, 45
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	2 cut(s)	93, 384
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspLEI	GCGC	4 cut(s)	13, 47, 112, 158
AspS9I	GGNCC	2 cut(s)	183, 385
AsuC2I	CCSGG	3 cut(s)	80, 187, 188
AsuHPI	GGTGA	5 cut(s)	76, 115, 157, 229, 274
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	183
BanI	GGYRCC	2 cut(s)	10, 44
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	2 cut(s)	137, 310
BcnI	CCSGG	3 cut(s)	80, 187, 188
BfaI	CTAG	2 cut(s)	192, 255
BfoI	RGCGCY	2 cut(s)	14, 48
BisI	GCNGC	2 cut(s)	127, 130
BlsI	GCNGC	2 cut(s)	128, 131
Bme1390I	CCNGG	3 cut(s)	80, 187, 188
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	183, 385
BmiI	GGNNCC	4 cut(s)	12, 46, 185, 387
BmrFI	CCNGG	3 cut(s)	80, 187, 188
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	60
BpuMI	CCSGG	3 cut(s)	80, 187, 188
BsaHI	GRCGYC	2 cut(s)	11, 45
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	2 cut(s)	112, 158
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	95, 386
BshNI	GGYRCC	2 cut(s)	10, 44
BsiEI	CGRYCG	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	4 cut(s)	36, 79, 187, 215
BslI	CCNNNNNNNGG	1 cut(s)	192
BsnI	GGCC	2 cut(s)	95, 386
BsoBI	CYCGRG	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	126, 129, 147, 158, 269
BspANI	GGCC	2 cut(s)	95, 386
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	112, 158
BspLI	GGNNCC	4 cut(s)	12, 46, 185, 387
BspT107I	GGYRCC	2 cut(s)	10, 44
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	2 cut(s)	11, 45
Bst4CI	ACNGT	2 cut(s)	103, 305
BstACI	GRCGYC	2 cut(s)	11, 45
BstDEI	CTNAG	1 cut(s)	201
BstEII	GGTNACC	3 cut(s)	82, 163, 280
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	2 cut(s)	112, 158
BstH2I	RGCGCY	2 cut(s)	14, 48
BstHHI	GCGC	4 cut(s)	13, 47, 112, 158
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 197
BstPI	GGTNACC	3 cut(s)	82, 163, 280
BstSCI	CCNGG	3 cut(s)	78, 185, 186
BstUI	CGCG	2 cut(s)	112, 158
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	95, 386
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	238
CfoI	GCGC	4 cut(s)	13, 47, 112, 158
Cfr13I	GGNCC	2 cut(s)	183, 385
Cfr9I	CCCGGG	1 cut(s)	186
CseI	GACGC	1 cut(s)	19
CviJI	RGCY	7 cut(s)	95, 180, 191, 200, 211, 253, 386
CviKI_1	RGCY	7 cut(s)	95, 180, 191, 200, 211, 253, 386
DdeI	CTNAG	1 cut(s)	201
DinI	GGCGCC	2 cut(s)	12, 46
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	162, 284
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	186
Eco91I	GGTNACC	3 cut(s)	82, 163, 280
EcoO65I	GGTNACC	3 cut(s)	82, 163, 280
EgeI	GGCGCC	2 cut(s)	12, 46
EheI	GGCGCC	2 cut(s)	12, 46
FaiI	YATR	1 cut(s)	323
FblI	GTMKAC	2 cut(s)	372, 394
Fnu4HI	GCNGC	2 cut(s)	127, 130
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	127, 130
FspBI	CTAG	2 cut(s)	192, 255
GlaI	GCGC	4 cut(s)	12, 46, 111, 157
GluI	GCNGC	2 cut(s)	127, 130
HaeII	RGCGCY	2 cut(s)	14, 48
HaeIII	GGCC	2 cut(s)	95, 386
HapII	CCGG	4 cut(s)	36, 79, 187, 215
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	4 cut(s)	13, 47, 112, 158
Hin1I	GRCGYC	2 cut(s)	11, 45
Hin6I	GCGC	4 cut(s)	11, 45, 110, 156
HinP1I	GCGC	4 cut(s)	11, 45, 110, 156
HinfI	GANTC	2 cut(s)	114, 272
HpaII	CCGG	4 cut(s)	36, 79, 187, 215
HphI	GGTGA	5 cut(s)	76, 115, 157, 229, 274
Hpy166II	GTNNAC	2 cut(s)	373, 395
Hpy8I	GTNNAC	2 cut(s)	373, 395
Hpy99I	CGWCG	4 cut(s)	35, 103, 248, 251
HpyAV	CCTTC	3 cut(s)	35, 190, 271
HpyCH4III	ACNGT	2 cut(s)	103, 305
HpyCH4IV	ACGT	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 197
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	2 cut(s)	11, 45
HspAI	GCGC	4 cut(s)	11, 45, 110, 156
KasI	GGCGCC	2 cut(s)	10, 44
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	6 cut(s)	49, 92, 166, 181, 200, 228
MaeI	CTAG	2 cut(s)	192, 255
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	4 cut(s)	82, 163, 280, 353
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	4 cut(s)	65, 299, 310, 371
MluCI	AATT	1 cut(s)	293
Mly113I	GGCGCC	2 cut(s)	11, 45
MlyI	GAGTC	2 cut(s)	108, 281
MnlI	CCTC	7 cut(s)	62, 85, 106, 127, 143, 154, 358
MspI	CCGG	4 cut(s)	36, 79, 187, 215
MspR9I	CCNGG	3 cut(s)	80, 187, 188
MvnI	CGCG	2 cut(s)	112, 158
MwoI	GCNNNNNNNGC	2 cut(s)	153, 197
NarI	GGCGCC	2 cut(s)	11, 45
NciI	CCSGG	3 cut(s)	80, 187, 188
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	4 cut(s)	12, 46, 185, 387
NmuCI	GTSAC	3 cut(s)	82, 163, 280
PceI	AGGCCT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	128, 131
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	2 cut(s)	108, 280
PluTI	GGCGCC	2 cut(s)	14, 48
PpsI	GAGTC	2 cut(s)	108, 280
Psp1406I	AACGTT	1 cut(s)	339
PspEI	GGTNACC	3 cut(s)	82, 163, 280
PspN4I	GGNNCC	4 cut(s)	12, 46, 185, 387
PspPI	GGNCC	2 cut(s)	183, 385
PvuI	CGATCG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	127, 130
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	183, 385
SchI	GAGTC	2 cut(s)	108, 281
ScrFI	CCNGG	3 cut(s)	80, 187, 188
SetI	ASST	7 cut(s)	73, 154, 165, 170, 213, 282, 342
SfoI	GGCGCC	2 cut(s)	12, 46
SinI	GGWCC	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	293
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	5 cut(s)	126, 129, 147, 158, 269
SspDI	GGCGCC	2 cut(s)	10, 44
SspMI	CTAG	2 cut(s)	192, 255
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	78, 185, 186
TaaI	ACNGT	2 cut(s)	103, 305
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	18, 98, 275
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	293
TauI	GCSGC	2 cut(s)	129, 132
TseFI	GTSAC	3 cut(s)	82, 163, 280
Tsp45I	GTSAC	3 cut(s)	82, 163, 280
TspDTI	ATGAA	3 cut(s)	66, 306, 345
TspMI	CCCGGG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	183
XmaI	CCCGGG	1 cut(s)	186
XmiI	GTMKAC	2 cut(s)	372, 394
XspI	CTAG	2 cut(s)	192, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.