Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Reverse (-)

31992506 .. 31992996

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGGAGGCGCCGATCGAGTGGTTCTGCGTCGCCGGAGAAGGCGCCGTTGAAGACCGAAACAGAGGAGGTGTTTTCCGGGTCGCCGATGAGGCCTCGACGGTGATTGCTCGACTCATCTTTTGCGGCGGCGAGGGGCTAGATGGCGGAGGGGCTGAAGCACGAATTGACCTTGATTTGGCTCAAGCGGAGGTCACCTGTTCGTTTGGCCGAACCCGGGCCAGGAAGGCTAAGAATGAGCTTCCGGTGAGCGATGTGGTGGATGTAATGAGCGACGACGAGCCTAGAAACGATGTGGCGGAGTCGAAGGTCACTGAAGACGAATTGAAGAACGGTGTTGTGGAGATGGTTATGGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

121

Amino Acids

12.92

Weight (kDa)

4.25

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 44
AciI	CCGC	5 cut(s)	126, 129, 147, 188, 299
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	2 cut(s)	177, 336
AcyI	GRCGYC	2 cut(s)	11, 45
AfiI	CCNNNNNNNGG	3 cut(s)	178, 217, 222
AgsI	TTSAA	2 cut(s)	53, 328
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	3 cut(s)	93, 208, 219
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspLEI	GCGC	2 cut(s)	13, 47
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	3 cut(s)	80, 217, 218
AsuHPI	GGTGA	3 cut(s)	115, 187, 259
AvaI	CYCGRG	1 cut(s)	216
BanI	GGYRCC	2 cut(s)	10, 44
BbsI	GAAGAC	2 cut(s)	60, 324
BccI	CCATC	2 cut(s)	137, 340
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	3 cut(s)	80, 217, 218
BfaI	CTAG	2 cut(s)	140, 285
BfoI	RGCGCY	2 cut(s)	14, 48
BglI	GCCNNNNNGGC	2 cut(s)	92, 227
BisI	GCNGC	2 cut(s)	127, 130
BlsI	GCNGC	2 cut(s)	128, 131
Bme1390I	CCNGG	4 cut(s)	80, 217, 218, 223
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	12, 46
BmrFI	CCNGG	4 cut(s)	80, 217, 218, 223
BpiI	GAAGAC	2 cut(s)	60, 324
BpuEI	CTTGAG	1 cut(s)	168
BpuMI	CCSGG	3 cut(s)	80, 217, 218
BsaHI	GRCGYC	2 cut(s)	11, 45
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 217, 222
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	178, 217, 222
BseRI	GAGGAG	2 cut(s)	20, 81
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	95, 210, 221
BshNI	GGYRCC	2 cut(s)	10, 44
BsiEI	CGRYCG	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	4 cut(s)	36, 79, 217, 245
BslI	CCNNNNNNNGG	3 cut(s)	178, 217, 222
BsnI	GGCC	3 cut(s)	95, 210, 221
BsoBI	CYCGRG	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	126, 129, 147, 188, 299
BspANI	GGCC	3 cut(s)	95, 210, 221
BspLI	GGNNCC	2 cut(s)	12, 46
BspT107I	GGYRCC	2 cut(s)	10, 44
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	2 cut(s)	11, 45
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	103, 335
BstACI	GRCGYC	2 cut(s)	11, 45
BstDEI	CTNAG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	268
BstH2I	RGCGCY	2 cut(s)	14, 48
BstHHI	GCGC	2 cut(s)	13, 47
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 227
BstNI	CCWGG	1 cut(s)	223
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	4 cut(s)	78, 215, 216, 221
BstV2I	GAAGAC	2 cut(s)	60, 324
BsuRI	GGCC	3 cut(s)	95, 210, 221
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	312
CfoI	GCGC	2 cut(s)	13, 47
Cfr13I	GGNCC	1 cut(s)	219
Cfr9I	CCCGGG	1 cut(s)	216
CseI	GACGC	1 cut(s)	19
CviJI	RGCY	9 cut(s)	95, 139, 155, 182, 210, 221, 230, 241, 283
CviKI_1	RGCY	9 cut(s)	95, 139, 155, 182, 210, 221, 230, 241, 283
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	2 cut(s)	12, 46
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	208
EciI	GGCGGA	2 cut(s)	162, 314
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	2 cut(s)	177, 336
Eco88I	CYCGRG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	221
EgeI	GGCGCC	2 cut(s)	12, 46
EheI	GGCGCC	2 cut(s)	12, 46
FaiI	YATR	1 cut(s)	353
Fnu4HI	GCNGC	2 cut(s)	127, 130
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	127, 130
FspBI	CTAG	2 cut(s)	140, 285
GlaI	GCGC	2 cut(s)	12, 46
GluI	GCNGC	2 cut(s)	127, 130
HaeII	RGCGCY	2 cut(s)	14, 48
HaeIII	GGCC	3 cut(s)	95, 210, 221
HapII	CCGG	4 cut(s)	36, 79, 217, 245
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	13, 47
Hin1I	GRCGYC	2 cut(s)	11, 45
Hin6I	GCGC	2 cut(s)	11, 45
HinP1I	GCGC	2 cut(s)	11, 45
HinfI	GANTC	2 cut(s)	114, 302
HpaII	CCGG	4 cut(s)	36, 79, 217, 245
HphI	GGTGA	3 cut(s)	115, 187, 259
Hpy99I	CGWCG	4 cut(s)	35, 103, 278, 281
HpyAV	CCTTC	3 cut(s)	35, 220, 301
HpyCH4III	ACNGT	2 cut(s)	103, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 227
HpyF3I	CTNAG	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	11, 45
HspAI	GCGC	2 cut(s)	11, 45
KasI	GGCGCC	2 cut(s)	10, 44
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	49, 92, 208, 211, 230, 235, 258
MaeI	CTAG	2 cut(s)	140, 285
MaeIII	GTNAC	2 cut(s)	193, 310
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	65, 329, 340
MluCI	AATT	3 cut(s)	165, 323, 358
Mly113I	GGCGCC	2 cut(s)	11, 45
MlyI	GAGTC	2 cut(s)	108, 311
MnlI	CCTC	7 cut(s)	59, 62, 85, 106, 127, 143, 184
MspI	CCGG	4 cut(s)	36, 79, 217, 245
MspR9I	CCNGG	4 cut(s)	80, 217, 218, 223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	92, 227
NarI	GGCGCC	2 cut(s)	11, 45
NciI	CCSGG	3 cut(s)	80, 217, 218
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	12, 46
NmuCI	GTSAC	2 cut(s)	193, 310
PceI	AGGCCT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	128, 131
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	2 cut(s)	108, 310
PluTI	GGCGCC	2 cut(s)	14, 48
PpsI	GAGTC	2 cut(s)	108, 310
Psp6I	CCWGG	1 cut(s)	221
PspEI	GGTNACC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	12, 46
PspPI	GGNCC	1 cut(s)	219
PvuI	CGATCG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	127, 130
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	2 cut(s)	108, 311
ScrFI	CCNGG	4 cut(s)	80, 217, 218, 223
SetI	ASST	6 cut(s)	73, 174, 195, 200, 243, 312
SfoI	GGCGCC	2 cut(s)	12, 46
SmaI	CCCGGG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	165, 323, 358
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	5 cut(s)	126, 129, 147, 188, 299
SspDI	GGCGCC	2 cut(s)	10, 44
SspMI	CTAG	2 cut(s)	140, 285
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	4 cut(s)	78, 215, 216, 221
TaaI	ACNGT	2 cut(s)	103, 335
TaqI	TCGA	4 cut(s)	18, 98, 112, 305
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	165, 323, 358
TauI	GCSGC	2 cut(s)	129, 132
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	193, 310
Tsp45I	GTSAC	2 cut(s)	193, 310
TspMI	CCCGGG	1 cut(s)	216
TspRI	CASTG	1 cut(s)	319
XmaI	CCCGGG	1 cut(s)	216
XspI	CTAG	2 cut(s)	140, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.