TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0406981 |
| rosa_laevigata | RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773 |
| rosa_multiflora | Rmu_sc0003703.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00261010 |
| rosa_samantha | Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400 |
| rosa_wichuraiana | Rw4G021440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 276, 298 |
| AccII | CGCG | 1 cut(s) | 83 |
| AciI | CCGC | 3 cut(s) | 5, 83, 86 |
| AclI | AACGTT | 1 cut(s) | 243 |
| AclWI | GGATC | 1 cut(s) | 144 |
| AgsI | TTSAA | 1 cut(s) | 202 |
| AluBI | AGCT | 2 cut(s) | 66, 115 |
| AluI | AGCT | 2 cut(s) | 66, 115 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 144 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 1 cut(s) | 45 |
| AspS9I | GGNCC | 1 cut(s) | 289 |
| AsuHPI | GGTGA | 3 cut(s) | 85, 133, 178 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BbvI | GCAGC | 1 cut(s) | 57 |
| BccI | CCATC | 1 cut(s) | 214 |
| BfaI | CTAG | 2 cut(s) | 159, 294 |
| BglII | AGATCT | 1 cut(s) | 37 |
| BisI | GCNGC | 2 cut(s) | 46, 84 |
| BlsI | GCNGC | 2 cut(s) | 47, 85 |
| BmgT120I | GGNCC | 1 cut(s) | 289 |
| BmiI | GGNNCC | 1 cut(s) | 291 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bse1I | ACTGG | 1 cut(s) | 26 |
| BseMII | CTCAG | 2 cut(s) | 32, 119 |
| BseNI | ACTGG | 1 cut(s) | 26 |
| BseRI | GAGGAG | 1 cut(s) | 188 |
| BseXI | GCAGC | 1 cut(s) | 57 |
| Bsh1236I | CGCG | 1 cut(s) | 83 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 1 cut(s) | 32 |
| Bsp143I | GATC | 2 cut(s) | 37, 136 |
| BspACI | CCGC | 3 cut(s) | 5, 83, 86 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 2 cut(s) | 33, 118 |
| BspFNI | CGCG | 1 cut(s) | 83 |
| BspLI | GGNNCC | 1 cut(s) | 291 |
| BspPI | GGATC | 1 cut(s) | 144 |
| BsrI | ACTGG | 1 cut(s) | 26 |
| BssMI | GATC | 2 cut(s) | 37, 136 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstDEI | CTNAG | 2 cut(s) | 41, 105 |
| BstEII | GGTNACC | 1 cut(s) | 184 |
| BstFNI | CGCG | 1 cut(s) | 83 |
| BstKTI | GATC | 2 cut(s) | 40, 139 |
| BstMBI | GATC | 2 cut(s) | 37, 136 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstPI | GGTNACC | 1 cut(s) | 184 |
| BstUI | CGCG | 1 cut(s) | 83 |
| BstV1I | GCAGC | 1 cut(s) | 57 |
| BstX2I | RGATCY | 2 cut(s) | 37, 136 |
| BstYI | RGATCY | 2 cut(s) | 37, 136 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtgZI | GCGATG | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 1 cut(s) | 289 |
| CseI | GACGC | 1 cut(s) | 89 |
| CviJI | RGCY | 5 cut(s) | 66, 104, 115, 157, 290 |
| CviKI_1 | RGCY | 5 cut(s) | 66, 104, 115, 157, 290 |
| DdeI | CTNAG | 2 cut(s) | 41, 105 |
| DpnI | GATC | 2 cut(s) | 39, 138 |
| DpnII | GATC | 2 cut(s) | 37, 136 |
| EciI | GGCGGA | 2 cut(s) | 20, 101 |
| Eco91I | GGTNACC | 1 cut(s) | 184 |
| EcoO65I | GGTNACC | 1 cut(s) | 184 |
| FaiI | YATR | 2 cut(s) | 92, 227 |
| FblI | GTMKAC | 2 cut(s) | 276, 298 |
| Fnu4HI | GCNGC | 2 cut(s) | 46, 84 |
| Fsp4HI | GCNGC | 2 cut(s) | 46, 84 |
| FspBI | CTAG | 2 cut(s) | 159, 294 |
| GluI | GCNGC | 2 cut(s) | 46, 84 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HgaI | GACGC | 1 cut(s) | 89 |
| HinfI | GANTC | 1 cut(s) | 176 |
| HphI | GGTGA | 3 cut(s) | 85, 133, 178 |
| Hpy166II | GTNNAC | 2 cut(s) | 277, 299 |
| Hpy188I | TCNGA | 2 cut(s) | 42, 108 |
| Hpy8I | GTNNAC | 2 cut(s) | 277, 299 |
| Hpy99I | CGWCG | 2 cut(s) | 152, 155 |
| HpyAV | CCTTC | 2 cut(s) | 94, 175 |
| HpyCH4IV | ACGT | 1 cut(s) | 243 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 2 cut(s) | 41, 105 |
| HpySE526I | ACGT | 1 cut(s) | 243 |
| Kzo9I | GATC | 2 cut(s) | 37, 136 |
| LmnI | GCTCC | 1 cut(s) | 27 |
| LpnPI | CCDG | 4 cut(s) | 7, 48, 52, 104 |
| Lsp1109I | GCAGC | 1 cut(s) | 57 |
| MaeI | CTAG | 2 cut(s) | 159, 294 |
| MaeII | ACGT | 1 cut(s) | 243 |
| MaeIII | GTNAC | 3 cut(s) | 73, 184, 257 |
| MalI | GATC | 2 cut(s) | 39, 138 |
| MboI | GATC | 2 cut(s) | 37, 136 |
| MboII | GAAGA | 3 cut(s) | 203, 214, 275 |
| MflI | RGATCY | 2 cut(s) | 37, 136 |
| MhlI | GDGCHC | 1 cut(s) | 32 |
| MluCI | AATT | 1 cut(s) | 197 |
| MlyI | GAGTC | 1 cut(s) | 185 |
| MnlI | CCTC | 3 cut(s) | 48, 166, 262 |
| MvnI | CGCG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 2 cut(s) | 37, 136 |
| NlaIV | GGNNCC | 1 cut(s) | 291 |
| NmuCI | GTSAC | 2 cut(s) | 73, 184 |
| PkrI | GCNGC | 2 cut(s) | 47, 85 |
| PleI | GAGTC | 1 cut(s) | 184 |
| PpsI | GAGTC | 1 cut(s) | 184 |
| Psp1406I | AACGTT | 1 cut(s) | 243 |
| PspEI | GGTNACC | 1 cut(s) | 184 |
| PspN4I | GGNNCC | 1 cut(s) | 291 |
| PspPI | GGNCC | 1 cut(s) | 289 |
| PsuI | RGATCY | 2 cut(s) | 37, 136 |
| SatI | GCNGC | 2 cut(s) | 46, 84 |
| Sau3AI | GATC | 2 cut(s) | 37, 136 |
| Sau96I | GGNCC | 1 cut(s) | 289 |
| SchI | GAGTC | 1 cut(s) | 185 |
| SduI | GDGCHC | 1 cut(s) | 32 |
| SetI | ASST | 6 cut(s) | 12, 59, 68, 117, 186, 246 |
| Sse9I | AATT | 1 cut(s) | 197 |
| SsiI | CCGC | 3 cut(s) | 5, 83, 86 |
| SspMI | CTAG | 2 cut(s) | 159, 294 |
| TaiI | ACGT | 1 cut(s) | 246 |
| TaqI | TCGA | 2 cut(s) | 53, 179 |
| TasI | AATT | 1 cut(s) | 197 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TseFI | GTSAC | 2 cut(s) | 73, 184 |
| TseI | GCWGC | 1 cut(s) | 45 |
| Tsp45I | GTSAC | 2 cut(s) | 73, 184 |
| TspDTI | ATGAA | 1 cut(s) | 210 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| XmiI | GTMKAC | 2 cut(s) | 276, 298 |
| XspI | CTAG | 2 cut(s) | 159, 294 |