Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

700912 .. 701784

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAGGGGTTTAGGCAAGAGTCCTACCTGCTTGTTCAATCTGAGGAAGAAGCAGTTTATCTTCATCTTCTCTCGGCGCGGCGGGATTGGCGGAGGTGGTGGCTGAGTCCTACGGGCACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGTGTACCCTTGACTGGAGTCATCGACTTCGCCGGCTCCGGCGTCTTCCACATGGTCGGAGGATGCACCGCCGCACTGACGACTCTCTTCAGGAAACGAATGTCTGCAACGGCCTCCTCGGCGGCTTCGCTGCCATCATCTCCGGCTGCTCCGTCGTCGACTCTTGCGTTGCCATCATCTGCAGCTTCGTCGCCGCCGTCGTCTTAGTCTCCTGCAACAAATTCGCTGAGAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTCAGAAATTGGGCTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

145

Amino Acids

16.49

Weight (kDa)

9.74

Isoelectric Point (pI)

83.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	76 - 138	2.2e-11	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	79
AciI	CCGC	8 cut(s)	79, 82, 91, 220, 223, 273, 345, 410
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	2 cut(s)	157, 392
AfiI	CCNNNNNNNGG	2 cut(s)	165, 406
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	140, 262
ApeKI	GCWGC	3 cut(s)	281, 297, 333
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	268, 284, 345
BccI	CCATC	2 cut(s)	293, 332
BceAI	ACGGC	2 cut(s)	277, 332
BcgI	CGANNNNNNTGC	4 cut(s)	322, 355, 356, 389
BcoDI	GTCTC	1 cut(s)	364
BfmI	CTRYAG	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	8 cut(s)	80, 223, 274, 282, 298, 334, 345, 411
BlsI	GCNGC	8 cut(s)	81, 224, 275, 283, 299, 335, 346, 412
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	268, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 406
Bse118I	RCCGGY	2 cut(s)	145, 183
Bse1I	ACTGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	268, 402
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	165, 406
BseMII	CTCAG	4 cut(s)	33, 95, 369, 428
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	268, 284, 345
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	142, 264
BsiSI	CCGG	4 cut(s)	146, 184, 190, 294
BslI	CCNNNNNNNGG	2 cut(s)	165, 406
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	142, 264
Bsp1286I	GDGCHC	1 cut(s)	119
BspACI	CCGC	8 cut(s)	79, 82, 91, 220, 223, 273, 345, 410
BspANI	GGCC	2 cut(s)	142, 264
BspCNI	CTCAG	4 cut(s)	34, 96, 370, 427
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	145, 183
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	2 cut(s)	145, 183
BssECI	CCNNGG	2 cut(s)	268, 402
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	5 cut(s)	42, 104, 355, 378, 414
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 270
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	268, 284, 345
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	142, 264
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	2 cut(s)	145, 183
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	156, 391
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	9 cut(s)	103, 142, 187, 264, 276, 297, 336, 413, 426
CviKI_1	RGCY	9 cut(s)	103, 142, 187, 264, 276, 297, 336, 413, 426
CviQI	GTAC	2 cut(s)	156, 391
DdeI	CTNAG	5 cut(s)	42, 104, 355, 378, 414
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	206
FaiI	YATR	1 cut(s)	204
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	8 cut(s)	80, 223, 274, 282, 298, 334, 345, 411
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	8 cut(s)	80, 223, 274, 282, 298, 334, 345, 411
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	8 cut(s)	80, 223, 274, 282, 298, 334, 345, 411
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	142, 264
HapII	CCGG	4 cut(s)	146, 184, 190, 294
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	5 cut(s)	20, 106, 169, 233, 311
HpaII	CCGG	4 cut(s)	146, 184, 190, 294
Hpy166II	GTNNAC	2 cut(s)	156, 310
Hpy188I	TCNGA	3 cut(s)	43, 210, 417
Hpy188III	TCNNGA	2 cut(s)	129, 242
Hpy8I	GTNNAC	2 cut(s)	156, 310
Hpy99I	CGWCG	5 cut(s)	308, 311, 344, 353, 398
HpyAV	CCTTC	1 cut(s)	376
HpyCH4V	TGCA	4 cut(s)	217, 258, 333, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 270
HpyF3I	CTNAG	5 cut(s)	42, 104, 355, 378, 414
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	192, 305
LpnPI	CCDG	8 cut(s)	41, 151, 159, 197, 203, 227, 307, 376
Lsp1109I	GCAGC	3 cut(s)	268, 284, 345
LweI	GCATC	1 cut(s)	204
MboII	GAAGA	7 cut(s)	53, 59, 59, 114, 117, 188, 230
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	2 cut(s)	371, 419
MluNI	TGGCCA	1 cut(s)	142
MlyI	GAGTC	5 cut(s)	29, 115, 178, 227, 305
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	6 cut(s)	37, 87, 204, 275, 278, 400
Mox20I	TGGCCA	1 cut(s)	142
MroNI	GCCGGC	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	142
Msp20I	TGGCCA	1 cut(s)	142
MspI	CCGG	4 cut(s)	146, 184, 190, 294
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	88, 270
NaeI	GCCGGC	1 cut(s)	185
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	188
NmeAIII	GCCGAG	2 cut(s)	53, 249
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 345, 348
PdiI	GCCGGC	1 cut(s)	185
PkrI	GCNGC	8 cut(s)	81, 224, 275, 283, 299, 335, 346, 412
PleI	GAGTC	5 cut(s)	28, 114, 177, 227, 305
PpsI	GAGTC	5 cut(s)	28, 114, 177, 227, 305
PshAI	GACNNNNGTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	157, 392
RsaNI	GTAC	2 cut(s)	156, 391
SalI	GTCGAC	1 cut(s)	308
SatI	GCNGC	8 cut(s)	80, 223, 274, 282, 298, 334, 345, 411
SchI	GAGTC	5 cut(s)	29, 115, 178, 227, 305
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	30, 98, 155, 338, 387
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	2 cut(s)	371, 419
SsiI	CCGC	8 cut(s)	79, 82, 91, 220, 223, 273, 345, 410
StyI	CCWWGG	1 cut(s)	402
TaqI	TCGA	2 cut(s)	175, 309
TasI	AATT	2 cut(s)	371, 419
TauI	GCSGC	5 cut(s)	82, 225, 276, 347, 413
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	281, 297, 333
TspDTI	ATGAA	2 cut(s)	17, 53
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.