Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

45892331 .. 45892919

Gene Structure 589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATCTTCATTTTCTCTCGGCGCGGCGGGATTGGCGGAGGTGGTGGCTGAGTCCTACGGGCACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGTGTACCCTCGACTGGAGTCATCGACTTCGCCGGCTCCGGCGTCTTCCACATGGTCGGAGGATGCACCGCCGCACTGACGACTCTCTTCAGGAAACGAATGTCTGCAACGGCCTCCTCGGCGGCTTCGCTGCCATCATCTCCGGCTGCTCTGTCGTCGACCCCTGCGTTGCCATCATCTGCAGCTTCGTCGCCGCCGTCGTCTTAGTCTCCTGCAACAAATTCGCCGAGAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTCAAAAATTGGGCTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

127

Amino Acids

14.39

Weight (kDa)

10.21

Isoelectric Point (pI)

75.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	58 - 120	1.8e-12	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	25
AciI	CCGC	8 cut(s)	25, 28, 37, 166, 169, 219, 291, 356
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	2 cut(s)	103, 338
AfiI	CCNNNNNNNGG	2 cut(s)	111, 352
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	86, 208
ApeKI	GCWGC	3 cut(s)	227, 243, 279
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	214, 230, 291
BccI	CCATC	2 cut(s)	239, 278
BceAI	ACGGC	2 cut(s)	223, 278
BcgI	CGANNNNNNTGC	4 cut(s)	268, 301, 302, 335
BcoDI	GTCTC	1 cut(s)	310
BfmI	CTRYAG	1 cut(s)	277
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	8 cut(s)	26, 169, 220, 228, 244, 280, 291, 357
BlsI	GCNGC	8 cut(s)	27, 170, 221, 229, 245, 281, 292, 358
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	214, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 352
Bse118I	RCCGGY	2 cut(s)	91, 129
Bse1I	ACTGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	214, 348
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	111, 352
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	214, 230, 291
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	88, 210
BsiSI	CCGG	4 cut(s)	92, 130, 136, 240
BslI	CCNNNNNNNGG	2 cut(s)	111, 352
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	88, 210
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	8 cut(s)	25, 28, 37, 166, 169, 219, 291, 356
BspANI	GGCC	2 cut(s)	88, 210
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	91, 129
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	2 cut(s)	91, 129
BssECI	CCNNGG	2 cut(s)	214, 348
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	50, 301
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 216
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	214, 230, 291
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	88, 210
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	91, 129
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	102, 337
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	9 cut(s)	49, 88, 133, 210, 222, 243, 282, 359, 372
CviKI_1	RGCY	9 cut(s)	49, 88, 133, 210, 222, 243, 282, 359, 372
CviQI	GTAC	2 cut(s)	102, 337
DdeI	CTNAG	2 cut(s)	50, 301
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	152
FaiI	YATR	1 cut(s)	150
FatI	CATG	1 cut(s)	148
FauI	CCCGC	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	8 cut(s)	26, 169, 220, 228, 244, 280, 291, 357
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	8 cut(s)	26, 169, 220, 228, 244, 280, 291, 357
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	8 cut(s)	26, 169, 220, 228, 244, 280, 291, 357
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	88, 210
HapII	CCGG	4 cut(s)	92, 130, 136, 240
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	52, 115, 179
HpaII	CCGG	4 cut(s)	92, 130, 136, 240
Hpy166II	GTNNAC	2 cut(s)	102, 256
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	75, 188
Hpy8I	GTNNAC	2 cut(s)	102, 256
Hpy99I	CGWCG	4 cut(s)	257, 290, 299, 344
HpyAV	CCTTC	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	163, 204, 279, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 216
HpyF3I	CTNAG	2 cut(s)	50, 301
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	8 cut(s)	97, 105, 143, 149, 173, 253, 274, 322
Lsp1109I	GCAGC	3 cut(s)	214, 230, 291
LweI	GCATC	1 cut(s)	150
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	4 cut(s)	60, 63, 134, 176
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	2 cut(s)	317, 365
MluNI	TGGCCA	1 cut(s)	88
MlyI	GAGTC	3 cut(s)	61, 124, 173
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	33, 116, 150, 221, 224, 346
Mox20I	TGGCCA	1 cut(s)	88
MroNI	GCCGGC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	88
Msp20I	TGGCCA	1 cut(s)	88
MspI	CCGG	4 cut(s)	92, 130, 136, 240
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	34, 216
NaeI	GCCGGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	4
NgoMIV	GCCGGC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	2 cut(s)	195, 349
PcsI	WCGNNNNNNNCGW	3 cut(s)	261, 291, 294
PdiI	GCCGGC	1 cut(s)	131
PkrI	GCNGC	8 cut(s)	27, 170, 221, 229, 245, 281, 292, 358
PleI	GAGTC	3 cut(s)	60, 123, 173
PpsI	GAGTC	3 cut(s)	60, 123, 173
PshAI	GACNNNNGTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	103, 338
RsaNI	GTAC	2 cut(s)	102, 337
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	8 cut(s)	26, 169, 220, 228, 244, 280, 291, 357
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	61, 124, 173
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	4 cut(s)	44, 101, 284, 333
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	317, 365
SsiI	CCGC	8 cut(s)	25, 28, 37, 166, 169, 219, 291, 356
StyI	CCWWGG	1 cut(s)	348
TaqI	TCGA	3 cut(s)	108, 121, 255
TasI	AATT	2 cut(s)	317, 365
TauI	GCSGC	5 cut(s)	28, 171, 222, 293, 359
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	227, 243, 279
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.