Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

69874985 .. 69875402

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATGATTCATCTTCATCTTCTCAAATTATCTTCTCCTAGATCTTCATCTTCTCTCGGCGCGGCGGGATTGGCGGAGGTGGTGGCTGAGTCCTACGCGCACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGAAACGAATGTCTGCAACGGCCTCCTCGGCGGCTTCGCTGCCATCATCTCCGGCTGCTCCGTCGTCGACCCCTGCGTTGCCATCATCTGCAGCTTCGTCGCCGCCGTCGTCTTAGTCTCCTGCAACAAATTTGCCGAGAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTCAGAAATTGGGCTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

109

Amino Acids

11.24

Weight (kDa)

6.8

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	38 - 102	4.9e-12	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	2 cut(s)	62, 98
AciI	CCGC	6 cut(s)	62, 65, 74, 165, 237, 302
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	256
AoxI	GGCC	2 cut(s)	123, 154
ApeKI	GCWGC	3 cut(s)	173, 189, 225
ApoI	RAATTY	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	62, 100
BalI	TGGCCA	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbvI	GCAGC	3 cut(s)	160, 176, 237
BccI	CCATC	2 cut(s)	185, 224
BceAI	ACGGC	2 cut(s)	169, 224
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	7 cut(s)	63, 166, 174, 190, 226, 237, 303
BlsI	GCNGC	7 cut(s)	64, 167, 175, 191, 227, 238, 304
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	160, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	160, 294
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	78, 320
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	160, 176, 237
Bsh1236I	CGCG	2 cut(s)	62, 98
BshFI	GGCC	2 cut(s)	125, 156
BsiSI	CCGG	2 cut(s)	129, 186
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	125, 156
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	6 cut(s)	62, 65, 74, 165, 237, 302
BspANI	GGCC	2 cut(s)	125, 156
BspCNI	CTCAG	2 cut(s)	79, 319
BspFNI	CGCG	2 cut(s)	62, 98
BspMAI	CTGCAG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	160, 294
BssMI	GATC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	87, 247, 306
BstFNI	CGCG	2 cut(s)	62, 98
BstHHI	GCGC	2 cut(s)	62, 100
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 162
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	2 cut(s)	62, 98
BstV1I	GCAGC	3 cut(s)	160, 176, 237
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	125, 156
CfoI	GCGC	2 cut(s)	62, 100
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	283
CviJI	RGCY	8 cut(s)	86, 125, 156, 168, 189, 228, 305, 318
CviKI_1	RGCY	8 cut(s)	86, 125, 156, 168, 189, 228, 305, 318
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	87, 247, 306
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	63, 166, 174, 190, 226, 237, 303
Fsp4HI	GCNGC	7 cut(s)	63, 166, 174, 190, 226, 237, 303
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	2 cut(s)	61, 99
GluI	GCNGC	7 cut(s)	63, 166, 174, 190, 226, 237, 303
HaeIII	GGCC	2 cut(s)	125, 156
HapII	CCGG	2 cut(s)	129, 186
HhaI	GCGC	2 cut(s)	62, 100
Hin6I	GCGC	2 cut(s)	60, 98
HinP1I	GCGC	2 cut(s)	60, 98
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	7, 89
HpaII	CCGG	2 cut(s)	129, 186
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	5 cut(s)	200, 203, 236, 245, 290
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	150, 225, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 162
HpyF3I	CTNAG	3 cut(s)	87, 247, 306
HspAI	GCGC	2 cut(s)	60, 98
Kzo9I	GATC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	142, 199, 220, 268
Lsp1109I	GCAGC	3 cut(s)	160, 176, 237
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	7 cut(s)	5, 11, 24, 36, 42, 97, 100
MflI	RGATCY	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	3 cut(s)	26, 263, 311
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	4 cut(s)	70, 167, 170, 292
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	2 cut(s)	129, 186
MvnI	CGCG	2 cut(s)	62, 98
MwoI	GCNNNNNNNGC	2 cut(s)	71, 162
NdeII	GATC	1 cut(s)	41
NmeAIII	GCCGAG	3 cut(s)	36, 141, 295
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 237, 240
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	7 cut(s)	64, 167, 175, 191, 227, 238, 304
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	7 cut(s)	63, 166, 174, 190, 226, 237, 303
Sau3AI	GATC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	98
SetI	ASST	3 cut(s)	81, 230, 279
SfcI	CTRYAG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	3 cut(s)	26, 263, 311
SsiI	CCGC	6 cut(s)	62, 65, 74, 165, 237, 302
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	201
TasI	AATT	3 cut(s)	26, 263, 311
TauI	GCSGC	4 cut(s)	65, 168, 239, 305
TfiI	GAWTC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	173, 189, 225
TspDTI	ATGAA	2 cut(s)	5, 36
TspGWI	ACGGA	1 cut(s)	184
XapI	RAATTY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.