Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

53611518 .. 53613998

Gene Structure 2481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAGATGAAGCAGTTGTTTGAGCTCTGGATAAGGTTGCTGGACAAGAACGATCTTCATCTTCTCTCAGCGCGGCGGGATTGGCGGAGGTGGTGGCTGAGTCCTACGCGCACATCTTCTTCACGAACTCAGTGGCCACCGGCAAGGTGTACCCTCGACTGGAGTCATCGACTTCGCCGGCTCCGGCATCTTCCACATGGTCGGAGGATGCACCGCCGCACTGACGACTCTCTTCAGGAAACAAATGTCTGCAACGGCCTCCTCGGCGGCTTCGCTGCCATCATCTCCGGCTGCTCCGTCGTCAACCCCTGCGTTGCCATCATCTGCAGCTTCGTCGCCGCCGTCGTCTTAGTCTCCTGCAACAAATTCGCCGAGAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTCAGAAATTGGGCTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

143

Amino Acids

16.47

Weight (kDa)

10.16

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	74 - 136	2.8e-12	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	73, 109
AciI	CCGC	8 cut(s)	73, 76, 85, 214, 217, 267, 339, 404
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	2 cut(s)	151, 386
AfiI	CCNNNNNNNGG	2 cut(s)	159, 400
AluBI	AGCT	2 cut(s)	25, 330
AluI	AGCT	2 cut(s)	25, 330
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	358
AoxI	GGCC	2 cut(s)	134, 256
ApeKI	GCWGC	3 cut(s)	275, 291, 327
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	73, 111
BalI	TGGCCA	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	262, 278, 339
BccI	CCATC	2 cut(s)	287, 326
BceAI	ACGGC	2 cut(s)	271, 326
BcgI	CGANNNNNNTGC	4 cut(s)	316, 349, 350, 383
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	8 cut(s)	74, 217, 268, 276, 292, 328, 339, 405
BlsI	GCNGC	8 cut(s)	75, 218, 269, 277, 293, 329, 340, 406
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	2 cut(s)	196, 198
BoxI	GACNNNNGTC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	262, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 400
Bse118I	RCCGGY	2 cut(s)	139, 177
Bse1I	ACTGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	262, 396
BseGI	GGATG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	159, 400
BseMII	CTCAG	4 cut(s)	81, 89, 143, 422
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	262, 278, 339
Bsh1236I	CGCG	2 cut(s)	73, 109
BshFI	GGCC	2 cut(s)	136, 258
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	4 cut(s)	140, 178, 184, 288
BslI	CCNNNNNNNGG	2 cut(s)	159, 400
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	136, 258
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	8 cut(s)	73, 76, 85, 214, 217, 267, 339, 404
BspANI	GGCC	2 cut(s)	136, 258
BspCNI	CTCAG	4 cut(s)	80, 90, 142, 421
BspFNI	CGCG	2 cut(s)	73, 109
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	329
BsrFI	RCCGGY	2 cut(s)	139, 177
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	2 cut(s)	139, 177
BssECI	CCNNGG	2 cut(s)	262, 396
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	5 cut(s)	67, 98, 129, 349, 408
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	73, 109
BstHHI	GCGC	2 cut(s)	73, 111
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 82, 264
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	325
BstUI	CGCG	2 cut(s)	73, 109
BstV1I	GCAGC	3 cut(s)	262, 278, 339
BsuRI	GGCC	2 cut(s)	136, 258
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	137, 219
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	2 cut(s)	73, 111
Cfr10I	RCCGGY	2 cut(s)	139, 177
Csp6I	GTAC	2 cut(s)	150, 385
CviAII	CATG	1 cut(s)	197
CviQI	GTAC	2 cut(s)	150, 385
DdeI	CTNAG	5 cut(s)	67, 98, 129, 349, 408
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	1 cut(s)	200
FaiI	YATR	1 cut(s)	198
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	8 cut(s)	74, 217, 268, 276, 292, 328, 339, 405
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	8 cut(s)	74, 217, 268, 276, 292, 328, 339, 405
GlaI	GCGC	2 cut(s)	72, 110
GluI	GCNGC	8 cut(s)	74, 217, 268, 276, 292, 328, 339, 405
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	136, 258
HapII	CCGG	4 cut(s)	140, 178, 184, 288
HhaI	GCGC	2 cut(s)	73, 111
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	2 cut(s)	71, 109
HinP1I	GCGC	2 cut(s)	71, 109
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	100, 163, 227
HpaII	CCGG	4 cut(s)	140, 178, 184, 288
Hpy166II	GTNNAC	2 cut(s)	150, 304
Hpy188I	TCNGA	2 cut(s)	204, 411
Hpy188III	TCNNGA	3 cut(s)	28, 123, 236
Hpy8I	GTNNAC	2 cut(s)	150, 304
Hpy99I	CGWCG	4 cut(s)	302, 338, 347, 392
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	4, 211, 252, 327, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 82, 264
HpyF3I	CTNAG	5 cut(s)	67, 98, 129, 349, 408
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	2 cut(s)	71, 109
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	186, 299
Lsp1109I	GCAGC	3 cut(s)	262, 278, 339
LweI	GCATC	2 cut(s)	196, 198
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	6 cut(s)	47, 53, 108, 111, 182, 224
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	2 cut(s)	365, 413
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	3 cut(s)	109, 172, 221
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	6 cut(s)	81, 164, 198, 269, 272, 394
Mox20I	TGGCCA	1 cut(s)	136
MroNI	GCCGGC	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	136
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	4 cut(s)	140, 178, 184, 288
MvnI	CGCG	2 cut(s)	73, 109
MwoI	GCNNNNNNNGC	3 cut(s)	10, 82, 264
NaeI	GCCGGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	182
NmeAIII	GCCGAG	2 cut(s)	243, 397
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 342
PdiI	GCCGGC	1 cut(s)	179
PkrI	GCNGC	8 cut(s)	75, 218, 269, 277, 293, 329, 340, 406
PleI	GAGTC	3 cut(s)	108, 171, 221
PpsI	GAGTC	3 cut(s)	108, 171, 221
PshAI	GACNNNNGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	151, 386
RsaNI	GTAC	2 cut(s)	150, 385
SacI	GAGCTC	1 cut(s)	27
SatI	GCNGC	8 cut(s)	74, 217, 268, 276, 292, 328, 339, 405
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	3 cut(s)	109, 172, 221
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	27, 38, 92, 149, 332, 381
SfaNI	GCATC	2 cut(s)	196, 198
SfcI	CTRYAG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	2 cut(s)	365, 413
SsiI	CCGC	8 cut(s)	73, 76, 85, 214, 217, 267, 339, 404
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	396
TaqI	TCGA	2 cut(s)	156, 169
TasI	AATT	2 cut(s)	365, 413
TauI	GCSGC	5 cut(s)	76, 219, 270, 341, 407
TscAI	CASTG	2 cut(s)	137, 226
TseI	GCWGC	3 cut(s)	275, 291, 327
TspDTI	ATGAA	2 cut(s)	23, 47
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	137, 226
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.