Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Reverse (-)

25523041 .. 25523388

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCACCGACGACTCTCGGAGTGGCGGTGGTGGCTGAGTCCTACGCGCACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGTGTACCCTCGATTGGAGTCATCGACTTCGCCGGCTCCGGCATCTTCCACATGGTCGGAGGATGCACCGCCGCACTGACGACTCTTTTCAAGAAATGAACGTCTGCAACGGCCTCCTCGGTGGCTTTGCTGCCATCATCTCCGGCTGCTCCGTTGTCGAGCCCTGCGTTGCCATCATCTGTAGCTTCGTCGCCGTCGTCGTCTTAGTCTCCTGCAACAAATTCGCCGAGAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

115

Amino Acids

13.29

Weight (kDa)

9.85

Isoelectric Point (pI)

81.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	52 - 114	3.2e-12	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AciI	CCGC	4 cut(s)	25, 151, 154, 341
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	2 cut(s)	88, 323
AfiI	CCNNNNNNNGG	2 cut(s)	96, 337
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	295
AoxI	GGCC	2 cut(s)	71, 193
ApeKI	GCWGC	2 cut(s)	212, 228
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbvI	GCAGC	2 cut(s)	199, 215
BccI	CCATC	2 cut(s)	224, 263
BceAI	ACGGC	2 cut(s)	208, 260
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BcoDI	GTCTC	1 cut(s)	295
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	4 cut(s)	154, 213, 229, 342
BlsI	GCNGC	4 cut(s)	155, 214, 230, 343
BmiI	GGNNCC	1 cut(s)	119
BmsI	GCATC	2 cut(s)	133, 135
BsaJI	CCNNGG	2 cut(s)	199, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 337
Bse118I	RCCGGY	2 cut(s)	76, 114
BseDI	CCNNGG	2 cut(s)	199, 333
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	96, 337
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	199, 215
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	73, 195
BsiSI	CCGG	4 cut(s)	77, 115, 121, 225
BslI	CCNNNNNNNGG	2 cut(s)	96, 337
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	73, 195
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	25, 151, 154, 341
BspANI	GGCC	2 cut(s)	73, 195
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	76, 114
BssAI	RCCGGY	2 cut(s)	76, 114
BssECI	CCNNGG	2 cut(s)	199, 333
BssT1I	CCWWGG	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	35, 286, 345
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	199, 215
BsuRI	GGCC	2 cut(s)	73, 195
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	2 cut(s)	76, 114
Csp6I	GTAC	2 cut(s)	87, 322
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	9 cut(s)	34, 73, 118, 195, 207, 228, 244, 267, 344
CviKI_1	RGCY	9 cut(s)	34, 73, 118, 195, 207, 228, 244, 267, 344
CviQI	GTAC	2 cut(s)	87, 322
DdeI	CTNAG	3 cut(s)	35, 286, 345
EaeI	YGGCCR	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	137
FaiI	YATR	1 cut(s)	135
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	154, 213, 229, 342
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	154, 213, 229, 342
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	154, 213, 229, 342
HaeIII	GGCC	2 cut(s)	73, 195
HapII	CCGG	4 cut(s)	77, 115, 121, 225
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	12, 37, 100, 164
HpaII	CCGG	4 cut(s)	77, 115, 121, 225
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	19, 141
Hpy188III	TCNNGA	2 cut(s)	60, 173
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	5 cut(s)	12, 275, 281, 284, 329
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	4, 148, 189, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	3 cut(s)	35, 286, 345
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	123, 236
LpnPI	CCDG	6 cut(s)	90, 128, 134, 238, 259, 307
Lsp1109I	GCAGC	2 cut(s)	199, 215
LweI	GCATC	2 cut(s)	133, 135
MaeII	ACGT	1 cut(s)	183
MboII	GAAGA	3 cut(s)	45, 48, 119
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	4 cut(s)	6, 46, 109, 158
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	101, 135, 206, 209, 331
Mox20I	TGGCCA	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	73
Msp20I	TGGCCA	1 cut(s)	73
MspI	CCGG	4 cut(s)	77, 115, 121, 225
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	31
NaeI	GCCGGC	1 cut(s)	116
NgoMIV	GCCGGC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 276, 279
PdiI	GCCGGC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	155, 214, 230, 343
PleI	GAGTC	4 cut(s)	6, 45, 108, 158
PpsI	GAGTC	4 cut(s)	6, 45, 108, 158
PspN4I	GGNNCC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	88, 323
RsaNI	GTAC	2 cut(s)	87, 322
SatI	GCNGC	4 cut(s)	154, 213, 229, 342
SchI	GAGTC	4 cut(s)	6, 46, 109, 158
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	4 cut(s)	86, 186, 269, 318
SfaNI	GCATC	2 cut(s)	133, 135
SfcI	CTRYAG	1 cut(s)	262
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	4 cut(s)	25, 151, 154, 341
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	93, 106, 240
TasI	AATT	1 cut(s)	302
TauI	GCSGC	2 cut(s)	156, 344
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	212, 228
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.