Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022459.1

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Reverse (-)

14360 .. 14650

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022459.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgctcggatccaaagtcatcgacttcaccgactccggtgtcgtctacatggttggaggatgcatcgctgcactgacgactctcttcgggaaacgaatcttctctggccattggaacctcactgacgtctacagcggcctcctcaacgacttctctgccatcatcttcagctgctccatcgtcgagccttgggctgccatcatctgcagcttcgtcgccaccaccatcttagtctcctgcaacaaattcaccgagaaggtcaagtacgactaccccttggaggcggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

96

Amino Acids

10.46

Weight (kDa)

5.04

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	1 cut(s)	129
AccI	GTMKAC	2 cut(s)	45, 129
AciI	CCGC	2 cut(s)	135, 284
AclWI	GGATC	2 cut(s)	3, 16
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	171, 210
AluI	AGCT	2 cut(s)	171, 210
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	3, 16
AoxI	GGCC	2 cut(s)	106, 136
ApeKI	GCWGC	4 cut(s)	68, 171, 194, 207
ApoI	RAATTY	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	19, 241
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbvI	GCAGC	4 cut(s)	55, 158, 181, 219
BccI	CCATC	4 cut(s)	167, 185, 206, 233
BcgI	CGANNNNNNTGC	4 cut(s)	137, 171, 196, 230
BcoDI	GTCTC	1 cut(s)	238
BfmI	CTRYAG	2 cut(s)	130, 205
BisI	GCNGC	6 cut(s)	69, 136, 172, 195, 208, 285
BlsI	GCNGC	6 cut(s)	70, 137, 173, 196, 209, 286
BmiI	GGNNCC	2 cut(s)	10, 116
BmsI	GCATC	2 cut(s)	50, 72
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	188, 276
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	188, 276
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	55, 158, 181, 219
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	108, 138
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	108, 138
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	135, 284
BspANI	GGCC	2 cut(s)	108, 138
BspLI	GGNNCC	2 cut(s)	10, 116
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	2 cut(s)	3, 16
BssECI	CCNNGG	2 cut(s)	188, 276
BssMI	GATC	1 cut(s)	8
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	188, 276
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	229, 288
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	130, 205
BstV1I	GCAGC	4 cut(s)	55, 158, 181, 219
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	108, 138
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	71, 120
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	7 cut(s)	108, 138, 171, 187, 194, 210, 287
CviKI_1	RGCY	7 cut(s)	108, 138, 171, 187, 194, 210, 287
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	229, 288
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	188, 276
Eco57I	CTGAAG	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	188, 276
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	188, 276
FaeI	CATG	1 cut(s)	52
FaiI	YATR	1 cut(s)	50
FatI	CATG	1 cut(s)	48
FblI	GTMKAC	2 cut(s)	45, 129
Fnu4HI	GCNGC	6 cut(s)	69, 136, 172, 195, 208, 285
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	6 cut(s)	69, 136, 172, 195, 208, 285
GluI	GCNGC	6 cut(s)	69, 136, 172, 195, 208, 285
HaeIII	GGCC	2 cut(s)	108, 138
HapII	CCGG	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	3 cut(s)	32, 79, 96
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	19, 241
Hpy166II	GTNNAC	2 cut(s)	46, 130
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	46, 130
Hpy99I	CGWCG	2 cut(s)	185, 218
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	63, 71, 207, 240
HpyF3I	CTNAG	2 cut(s)	229, 288
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	49, 90, 250
Lsp1109I	GCAGC	4 cut(s)	55, 158, 181, 219
LweI	GCATC	2 cut(s)	50, 72
MaeII	ACGT	1 cut(s)	126
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	3 cut(s)	76, 91, 157
MflI	RGATCY	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	1 cut(s)	245
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	26, 73
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	50, 128, 149, 152, 274
Mox20I	TGGCCA	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	2 cut(s)	135, 171
MspI	CCGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	10, 116
NsiI	ATGCAT	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	6 cut(s)	70, 137, 173, 196, 209, 286
PleI	GAGTC	2 cut(s)	26, 73
PpsI	GAGTC	2 cut(s)	26, 73
PspN4I	GGNNCC	2 cut(s)	10, 116
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SatI	GCNGC	6 cut(s)	69, 136, 172, 195, 208, 285
Sau3AI	GATC	1 cut(s)	8
SchI	GAGTC	2 cut(s)	26, 73
SetI	ASST	5 cut(s)	120, 129, 173, 212, 261
SfaNI	GCATC	2 cut(s)	50, 72
SfcI	CTRYAG	2 cut(s)	130, 205
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	2 cut(s)	135, 284
StyI	CCWWGG	2 cut(s)	188, 276
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	21, 183
TasI	AATT	1 cut(s)	245
TauI	GCSGC	2 cut(s)	138, 287
TfiI	GAWTC	1 cut(s)	96
TscAI	CASTG	2 cut(s)	78, 127
TseI	GCWGC	4 cut(s)	68, 171, 194, 207
TspRI	CASTG	2 cut(s)	78, 127
XapI	RAATTY	1 cut(s)	245
XmiI	GTMKAC	2 cut(s)	45, 129
ZraI	GACGTC	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.