Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

95548162 .. 95548618

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGTATATCCGCGGTTTGGAAAAAAAAATCTGGTAATACTCATATTCGATCCGGAGTCATCGACTTTGCGCGCTCCGGCGTCTTCCACATGGTCGGAGGATGCACCGCCGCACCGACGACTCTCTTCGGGAAACGAATCCTCTCCGGCCACCGGAGCGTTACCGACGTTTGCAACGGCCTCCTCGGCGGCTTTGCGCCATCATCTCCGGCTACTCCGTCGTCAAGCCCTCGCGTTGCCATCATCTGCGGCTTCGTCGCCGCCGTCGTCTTAGTCTCTCGTTACAAATTCGCCGAGAAGGTCAAGTACGACGACCCCTTGGAGGCGGCTCATAAATTGGGCTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

116

Amino Acids

12.2

Weight (kDa)

10.03

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	35 - 110	4.7e-13	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	14, 73, 234
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	8 cut(s)	12, 14, 108, 111, 189, 249, 261, 326
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	18, 153, 322
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	45
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	2 cut(s)	148, 178
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	3 cut(s)	73, 75, 199
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	2 cut(s)	208, 248
BceAI	ACGGC	2 cut(s)	193, 248
BcoDI	GTCTC	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	186
BisI	GCNGC	5 cut(s)	111, 190, 250, 261, 327
BlsI	GCNGC	5 cut(s)	112, 191, 251, 262, 328
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	12, 184, 318
BsaWI	WCCGGW	2 cut(s)	53, 153
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 153, 322
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	12, 184, 318
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	3 cut(s)	18, 153, 322
BsePI	GCGCGC	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	3 cut(s)	14, 73, 234
BshFI	GGCC	2 cut(s)	150, 180
BsiSI	CCGG	5 cut(s)	54, 78, 147, 154, 209
BslI	CCNNNNNNNGG	3 cut(s)	18, 153, 322
BsmAI	GTCTC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	150, 180
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	8 cut(s)	12, 14, 108, 111, 189, 249, 261, 326
BspANI	GGCC	2 cut(s)	150, 180
BspEI	TCCGGA	1 cut(s)	53
BspFNI	CGCG	3 cut(s)	14, 73, 234
BspPI	GGATC	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	12, 184, 318
BssHII	GCGCGC	1 cut(s)	71
BssMI	GATC	1 cut(s)	50
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	3 cut(s)	14, 73, 234
BstHHI	GCGC	3 cut(s)	73, 75, 199
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 186
BstUI	CGCG	3 cut(s)	14, 73, 234
BstV2I	GAAGAC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	150, 180
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	3 cut(s)	73, 75, 199
Cfr42I	CCGCGG	1 cut(s)	15
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	8 cut(s)	150, 180, 192, 212, 228, 252, 329, 342
CviKI_1	RGCY	8 cut(s)	150, 180, 192, 212, 228, 252, 329, 342
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	8, 45, 92, 333
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	111, 190, 250, 261, 327
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	5 cut(s)	111, 190, 250, 261, 327
GlaI	GCGC	3 cut(s)	72, 74, 198
GluI	GCNGC	5 cut(s)	111, 190, 250, 261, 327
HaeIII	GGCC	2 cut(s)	150, 180
HapII	CCGG	5 cut(s)	54, 78, 147, 154, 209
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	3 cut(s)	73, 75, 199
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	3 cut(s)	71, 73, 197
HinP1I	GCGC	3 cut(s)	71, 73, 197
HinfI	GANTC	3 cut(s)	57, 121, 138
HpaII	CCGG	5 cut(s)	54, 78, 147, 154, 209
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	54, 130
Hpy99I	CGWCG	6 cut(s)	121, 170, 223, 260, 269, 314
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	105, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 186
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	3 cut(s)	71, 73, 197
Kpn2I	TCCGGA	1 cut(s)	53
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	80, 156
LpnPI	CCDG	6 cut(s)	18, 67, 91, 160, 167, 222
LweI	GCATC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	160, 281
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	76, 118
MluCI	AATT	2 cut(s)	287, 335
MlyI	GAGTC	2 cut(s)	66, 115
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	92, 152, 191, 194, 240, 316
MroI	TCCGGA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	5 cut(s)	54, 78, 147, 154, 209
MvnI	CGCG	3 cut(s)	14, 73, 234
MwoI	GCNNNNNNNGC	2 cut(s)	156, 186
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	94
NmeAIII	GCCGAG	2 cut(s)	165, 319
PauI	GCGCGC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 264
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	5 cut(s)	112, 191, 251, 262, 328
PleI	GAGTC	2 cut(s)	65, 115
PpsI	GAGTC	2 cut(s)	65, 115
PteI	GCGCGC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SacII	CCGCGG	1 cut(s)	15
SatI	GCNGC	5 cut(s)	111, 190, 250, 261, 327
Sau3AI	GATC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	66, 115
SetI	ASST	2 cut(s)	171, 303
SfaNI	GCATC	1 cut(s)	92
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	287, 335
SsiI	CCGC	8 cut(s)	12, 14, 108, 111, 189, 249, 261, 326
StyI	CCWWGG	1 cut(s)	318
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	49, 63
TasI	AATT	2 cut(s)	287, 335
TauI	GCSGC	5 cut(s)	113, 192, 252, 263, 329
TfiI	GAWTC	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	207
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.