Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

53528194 .. 53529883

Gene Structure 1690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATGATTCATCTTCATCTTCTCAAAATCCCATATCTTCATCTTCTCCCAGATCTTCATCTTCTCTCGGCGCGGCGGGATTGGCGGAGGTGGTGGCTGAGTCCTACGCGCACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGTGTACCCTCGACTGGAGTCATCGACTTCGCTGGCTCCGGCATCTTCCACATGGTCGGAGGATGCACCGCCGCACTGACGACTCTCTTCAGGAAACAAATGTCTGCAACGGCCTCCTCGGCGGCTTCGCTGCCATCATCTCCGGCTGCTCCGTCGTCAACCCCTGCGTTGCCATCATCTGCAGCTTCGTCGCCGCCGTCGTCTTAGTCTCCTGCAACAAATTCGCCGAGAAGGGAGATGTTAGTGAAGAGAAAGTAGATTCATTTAACATACCTATGTATACCATGTCTGCCCAAGAACTGAAAGCTGCTGTAGAACGAAATGGATGTTTTAGTATAGAGATAATGTCAGACTTACCTCATCATCAGTTGGTAGATGACACTATCTCCCTATCTCAACTACTTGCCTCTCACCTGAGGGCGGGCATGGAGGGGATCGTCAAGCAGCAATTTGGAGAAGAAATCATAGATGAGCTGTTTGACTTGTATCGGAATAAATGTGAAGAGCATGCCTCCATATTTAAGTCAGGGAAGTCATGTAACTTTCTTGTTGTGCTTAGGCGCACTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

240

Amino Acids

27.32

Weight (kDa)

8.4

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	74 - 126	1.9e-07	Ammonium Transporter Family
Methyltransf_7	PF03492	102 - 236	7.9e-26	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	2 cut(s)	73, 109
AciI	CCGC	8 cut(s)	73, 76, 85, 214, 217, 267, 339, 566
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	159, 565
AluBI	AGCT	3 cut(s)	330, 452, 619
AluI	AGCT	3 cut(s)	330, 452, 619
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	587
AoxI	GGCC	2 cut(s)	134, 256
ApeKI	GCWGC	5 cut(s)	275, 291, 327, 452, 589
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	3 cut(s)	73, 111, 708
AsuHPI	GGTGA	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	136
BbvI	GCAGC	5 cut(s)	262, 278, 339, 439, 601
BccI	CCATC	2 cut(s)	287, 326
BceAI	ACGGC	2 cut(s)	271, 326
BcgI	CGANNNNNNTGC	4 cut(s)	316, 349, 350, 383
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	3 cut(s)	325, 456, 711
BglI	GCCNNNNNGGC	1 cut(s)	264
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	9 cut(s)	74, 217, 268, 276, 292, 328, 339, 453, 590
BlsI	GCNGC	9 cut(s)	75, 218, 269, 277, 293, 329, 340, 454, 591
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	2 cut(s)	196, 198
BoxI	GACNNNNGTC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpmI	CTGGAG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 565
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	213, 476
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	159, 565
BseMII	CTCAG	2 cut(s)	89, 551
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	5 cut(s)	262, 278, 339, 439, 601
Bsh1236I	CGCG	2 cut(s)	73, 109
BshFI	GGCC	2 cut(s)	136, 258
BsiSI	CCGG	3 cut(s)	140, 184, 288
BslI	CCNNNNNNNGG	2 cut(s)	159, 565
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	136, 258
Bsp143I	GATC	2 cut(s)	52, 579
BspACI	CCGC	8 cut(s)	73, 76, 85, 214, 217, 267, 339, 566
BspANI	GGCC	2 cut(s)	136, 258
BspCNI	CTCAG	2 cut(s)	90, 552
BspFNI	CGCG	2 cut(s)	73, 109
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	2 cut(s)	329, 715
BspPI	GGATC	1 cut(s)	587
BspQI	GCTCTTC	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	52, 579
BssNAI	GTATAC	1 cut(s)	426
Bst1107I	GTATAC	1 cut(s)	426
Bst6I	CTCTTC	3 cut(s)	237, 387, 642
BstC8I	GCNNGC	3 cut(s)	179, 568, 654
BstDEI	CTNAG	4 cut(s)	98, 349, 560, 701
BstF5I	GGATG	2 cut(s)	213, 476
BstFNI	CGCG	2 cut(s)	73, 109
BstHHI	GCGC	3 cut(s)	73, 111, 708
BstKTI	GATC	2 cut(s)	55, 582
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	52, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 264
BstNSI	RCATGY	1 cut(s)	656
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSFI	CTRYAG	3 cut(s)	325, 456, 711
BstUI	CGCG	2 cut(s)	73, 109
BstV1I	GCAGC	5 cut(s)	262, 278, 339, 439, 601
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BstZ17I	GTATAC	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	136, 258
BtsCI	GGATG	2 cut(s)	213, 476
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	219, 708
Cac8I	GCNNGC	3 cut(s)	179, 568, 654
CfoI	GCGC	3 cut(s)	73, 111, 708
Cfr10I	RCCGGY	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	5 cut(s)	197, 430, 571, 653, 681
CviJI	RGCY	9 cut(s)	97, 136, 181, 258, 270, 291, 330, 452, 619
CviKI_1	RGCY	9 cut(s)	97, 136, 181, 258, 270, 291, 330, 452, 619
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	4 cut(s)	98, 349, 560, 701
DpnI	GATC	2 cut(s)	54, 581
DpnII	GATC	2 cut(s)	52, 579
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	237, 387, 642
EarI	CTCTTC	3 cut(s)	237, 387, 642
EciI	GGCGGA	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	560
FaeI	CATG	5 cut(s)	200, 433, 574, 656, 684
FatI	CATG	5 cut(s)	196, 429, 570, 652, 680
FauI	CCCGC	2 cut(s)	69, 559
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	9 cut(s)	74, 217, 268, 276, 292, 328, 339, 453, 590
FokI	GGATG	2 cut(s)	220, 483
Fsp4HI	GCNGC	9 cut(s)	74, 217, 268, 276, 292, 328, 339, 453, 590
GlaI	GCGC	3 cut(s)	72, 110, 707
GluI	GCNGC	9 cut(s)	74, 217, 268, 276, 292, 328, 339, 453, 590
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	136, 258
HapII	CCGG	3 cut(s)	140, 184, 288
HhaI	GCGC	3 cut(s)	73, 111, 708
Hin1II	CATG	5 cut(s)	200, 433, 574, 656, 684
Hin6I	GCGC	3 cut(s)	71, 109, 706
HinP1I	GCGC	3 cut(s)	71, 109, 706
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	7, 100, 163, 227, 404
HpaII	CCGG	3 cut(s)	140, 184, 288
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	150, 304, 426
Hpy188I	TCNGA	3 cut(s)	204, 496, 636
Hpy188III	TCNNGA	2 cut(s)	123, 236
Hpy8I	GTNNAC	3 cut(s)	150, 304, 426
Hpy99I	CGWCG	3 cut(s)	302, 338, 347
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	211, 252, 327, 360, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 264
HpyF3I	CTNAG	4 cut(s)	98, 349, 560, 701
Hsp92II	CATG	5 cut(s)	200, 433, 574, 656, 684
HspAI	GCGC	3 cut(s)	71, 109, 706
Kzo9I	GATC	2 cut(s)	52, 579
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	186, 299
Lsp1109I	GCAGC	5 cut(s)	262, 278, 339, 439, 601
LweI	GCATC	2 cut(s)	196, 198
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	2 cut(s)	54, 581
MboI	GATC	2 cut(s)	52, 579
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	2 cut(s)	365, 593
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	3 cut(s)	109, 172, 221
MmeI	TCCRAC	1 cut(s)	182
Mox20I	TGGCCA	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	2 cut(s)	411, 666
MslI	CAYNNNNRTG	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	3 cut(s)	140, 184, 288
MvnI	CGCG	2 cut(s)	73, 109
MwoI	GCNNNNNNNGC	2 cut(s)	82, 264
NdeII	GATC	2 cut(s)	52, 579
NlaIII	CATG	5 cut(s)	200, 433, 574, 656, 684
NlaIV	GGNNCC	1 cut(s)	182
NmeAIII	GCCGAG	3 cut(s)	47, 243, 397
NspI	RCATGY	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	656
PciSI	GCTCTTC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 342
PfeI	GAWTC	2 cut(s)	7, 404
PkrI	GCNGC	9 cut(s)	75, 218, 269, 277, 293, 329, 340, 454, 591
PleI	GAGTC	3 cut(s)	108, 171, 221
PpsI	GAGTC	3 cut(s)	108, 171, 221
PshAI	GACNNNNGTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	182
PstI	CTGCAG	2 cut(s)	329, 715
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	411, 666
SatI	GCNGC	9 cut(s)	74, 217, 268, 276, 292, 328, 339, 453, 590
Sau3AI	GATC	2 cut(s)	52, 579
SchI	GAGTC	3 cut(s)	109, 172, 221
SetI	ASST	8 cut(s)	92, 149, 332, 421, 454, 505, 561, 621
SfaNI	GCATC	2 cut(s)	196, 198
SfcI	CTRYAG	3 cut(s)	325, 456, 711
SmiMI	CAYNNNNRTG	1 cut(s)	419
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	2 cut(s)	365, 593
SsiI	CCGC	8 cut(s)	73, 76, 85, 214, 217, 267, 339, 566
TaqI	TCGA	2 cut(s)	156, 169
TasI	AATT	2 cut(s)	365, 593
TauI	GCSGC	4 cut(s)	76, 219, 270, 341
TfiI	GAWTC	2 cut(s)	7, 404
Tru1I	TTAA	2 cut(s)	411, 666
Tru9I	TTAA	2 cut(s)	411, 666
TscAI	CASTG	2 cut(s)	226, 715
TseI	GCWGC	5 cut(s)	275, 291, 327, 452, 589
TspDTI	ATGAA	4 cut(s)	5, 29, 47, 396
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	226, 715
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.