Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000161.1

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Forward (+)

6042 .. 6872

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000161.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgggtatccacgggtacccgttccatttgggtaaaaaaattcgggtatttgtagtagtaaattacctatggggtaatgggtgttggatacccactcaggcgcggcgggattggcagcggtggtggctgagtcctacacgcacatcttcttcacgaactcgatggccaccgacaaggtgtaccctcgactggagtcatcgacttcgccggctccgacgtcttccacatggtcggaggatgcaccgccgcactgatgactctcttcaggaaacgaacatctgcaacggcctcctcggtggcttcgctgccatcatctctggctgctccttcatcgagccctgcatcgccatcatctacagcttcgtcgccgccgtcgtcttagtctcctgcaacaaattcgctgagaaggtcaagtacgacgaccccttggaggcggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

146

Amino Acids

16.93

Weight (kDa)

10.13

Isoelectric Point (pI)

71.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AccII	CGCG	1 cut(s)	103
AciI	CCGC	7 cut(s)	103, 106, 118, 244, 247, 369, 434
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	39, 395
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	3 cut(s)	17, 181, 416
AfiI	CCNNNNNNNGG	2 cut(s)	189, 430
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	164, 286
ApeKI	GCWGC	3 cut(s)	115, 305, 321
ApoI	RAATTY	2 cut(s)	39, 395
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	339
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	127, 292, 308
BccI	CCATC	3 cut(s)	156, 317, 356
BceAI	ACGGC	2 cut(s)	301, 356
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciVI	GTATCC	2 cut(s)	17, 81
BcoDI	GTCTC	1 cut(s)	388
BfmI	CTRYAG	1 cut(s)	355
BfuI	GTATCC	2 cut(s)	17, 81
BisI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
BlsI	GCNGC	7 cut(s)	105, 117, 248, 307, 323, 370, 436
BmiI	GGNNCC	2 cut(s)	17, 212
BmsI	GCATC	2 cut(s)	228, 351
BoxI	GACNNNNGTC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	10, 292, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 430
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	10, 292, 426
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	189, 430
BseMII	CTCAG	3 cut(s)	110, 119, 393
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	127, 292, 308
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	166, 288
BshNI	GGYRCC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	189, 430
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	166, 288
Bsp1286I	GDGCHC	1 cut(s)	339
BspACI	CCGC	7 cut(s)	103, 106, 118, 244, 247, 369, 434
BspANI	GGCC	2 cut(s)	166, 288
BspCNI	CTCAG	3 cut(s)	109, 120, 394
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	17, 212
BspT107I	GGYRCC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	10, 292, 426
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	5 cut(s)	96, 128, 379, 402, 438
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 124
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	127, 292, 308
BstV2I	GAAGAC	1 cut(s)	212
BsuI	GTATCC	2 cut(s)	17, 81
BsuRI	GGCC	2 cut(s)	166, 288
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	16, 180, 415
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	127, 166, 211, 288, 300, 321, 337, 360, 437
CviKI_1	RGCY	9 cut(s)	127, 166, 211, 288, 300, 321, 337, 360, 437
CviQI	GTAC	3 cut(s)	16, 180, 415
DdeI	CTNAG	5 cut(s)	96, 128, 379, 402, 438
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	230
FaiI	YATR	2 cut(s)	70, 228
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	166, 288
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	3 cut(s)	130, 193, 257
HpaII	CCGG	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	2 cut(s)	215, 234
Hpy188III	TCNNGA	2 cut(s)	153, 266
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	4 cut(s)	219, 368, 377, 422
HpyAV	CCTTC	2 cut(s)	337, 400
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	241, 282, 342, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 124
HpyF3I	CTNAG	5 cut(s)	96, 128, 379, 402, 438
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	216, 329
LpnPI	CCDG	7 cut(s)	83, 175, 221, 251, 303, 352, 400
Lsp1109I	GCAGC	3 cut(s)	127, 292, 308
LweI	GCATC	2 cut(s)	228, 351
MaeII	ACGT	1 cut(s)	217
MboII	GAAGA	4 cut(s)	138, 141, 212, 254
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	3 cut(s)	39, 61, 395
MluNI	TGGCCA	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	139, 202, 251
MmeI	TCCRAC	3 cut(s)	65, 212, 238
MnlI	CCTC	5 cut(s)	194, 228, 299, 302, 424
Mox20I	TGGCCA	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	166
Msp20I	TGGCCA	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	112, 124
NaeI	GCCGGC	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	17, 212
PcsI	WCGNNNNNNNCGW	3 cut(s)	211, 369, 372
PdiI	GCCGGC	1 cut(s)	209
PkrI	GCNGC	7 cut(s)	105, 117, 248, 307, 323, 370, 436
PleI	GAGTC	3 cut(s)	138, 201, 251
PpsI	GAGTC	3 cut(s)	138, 201, 251
PshAI	GACNNNNGTC	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	17, 212
RsaI	GTAC	3 cut(s)	17, 181, 416
RsaNI	GTAC	3 cut(s)	16, 180, 415
SatI	GCNGC	7 cut(s)	104, 116, 247, 306, 322, 369, 435
SchI	GAGTC	3 cut(s)	139, 202, 251
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	5 cut(s)	69, 179, 220, 362, 411
SfaNI	GCATC	2 cut(s)	228, 351
SfcI	CTRYAG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	39, 61, 395
SsiI	CCGC	7 cut(s)	103, 106, 118, 244, 247, 369, 434
StyI	CCWWGG	1 cut(s)	426
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	4 cut(s)	160, 186, 199, 333
TasI	AATT	3 cut(s)	39, 61, 395
TauI	GCSGC	4 cut(s)	106, 249, 371, 437
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	3 cut(s)	115, 305, 321
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	39, 395
ZraI	GACGTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.