Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017022

Physical Location & Seq

Genomic Coordinates Reverse (-)

25549012 .. 25549347

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCACCGGCAGCTCTCGGCGTGGCGGGATTGGCGGTGGTGGTGGCTGAGTCCTACGCGCACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGTGTACCCTCAACTGGAGTCATCGACTTCGCCGGCTTCGGCATCTTCCACATGGTCGGAGGATGCACCGCCGCACTAATGACTCTCTTCAGGAAACGAATGTCTGCAATGGCCTCCTCAGCGGCTTCGCTGCCATCATCTCCGGCTGCTCCGTCGTCGAGCCCTGCGTCGACATCATCTGCAGCTTCGTTGCCGCCATCGTCTTAGTCTCCTGTAACAAATTCGCCGAGAAGGTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001763 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015695 GO:0015696 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022622 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0034622 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051258 GO:0055044 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072488 GO:0080167 GO:0080181 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0098655 GO:0099402 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

111

Amino Acids

12.97

Weight (kDa)

11.24

Isoelectric Point (pI)

74.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	56 - 111	7.8e-07	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017022)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005665 RLG00000014025 RLG00000030027 RLG00000030031 RLG00000035653
rosa_multiflora	Rmu_sc0000148.1_g000022 Rmu_sc0000497.1_g000001 Rmu_sc0022459.1_g000003 Rmu_ssc0000161.1_g000001 Rmu_ssc0000161.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074610
rosa_samantha	Rh2AG235900 Rh2BG249000 Rh2DG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	58
AciI	CCGC	6 cut(s)	25, 34, 163, 166, 216, 288
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	13, 279
AluI	AGCT	2 cut(s)	13, 279
Alw26I	GTCTC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	83, 205
ApeKI	GCWGC	4 cut(s)	10, 224, 240, 276
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	22, 211, 227, 288
BccI	CCATC	2 cut(s)	236, 299
BcoDI	GTCTC	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	7 cut(s)	11, 166, 217, 225, 241, 277, 288
BlsI	GCNGC	7 cut(s)	12, 167, 218, 226, 242, 278, 289
BmsI	GCATC	2 cut(s)	145, 147
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	3 cut(s)	6, 88, 126
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	38, 226
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	22, 211, 227, 288
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	85, 207
BsiSI	CCGG	4 cut(s)	7, 89, 127, 237
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	85, 207
Bsp1286I	GDGCHC	1 cut(s)	258
BspACI	CCGC	6 cut(s)	25, 34, 163, 166, 216, 288
BspANI	GGCC	2 cut(s)	85, 207
BspCNI	CTCAG	2 cut(s)	39, 225
BspFNI	CGCG	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	3 cut(s)	6, 88, 126
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	3 cut(s)	6, 88, 126
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	47, 212, 298
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 31, 213
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	22, 211, 227, 288
BsuRI	GGCC	2 cut(s)	85, 207
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	3 cut(s)	6, 88, 126
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	9 cut(s)	13, 46, 85, 130, 207, 219, 240, 256, 279
CviKI_1	RGCY	9 cut(s)	13, 46, 85, 130, 207, 219, 240, 256, 279
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	47, 212, 298
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	1 cut(s)	149
FaiI	YATR	1 cut(s)	147
FatI	CATG	1 cut(s)	145
FauI	CCCGC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	7 cut(s)	11, 166, 217, 225, 241, 277, 288
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	7 cut(s)	11, 166, 217, 225, 241, 277, 288
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	7 cut(s)	11, 166, 217, 225, 241, 277, 288
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	85, 207
HapII	CCGG	4 cut(s)	7, 89, 127, 237
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	49, 112, 176
HpaII	CCGG	4 cut(s)	7, 89, 127, 237
Hpy166II	GTNNAC	2 cut(s)	99, 265
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	72, 185
Hpy8I	GTNNAC	2 cut(s)	99, 265
Hpy99I	CGWCG	3 cut(s)	251, 254, 266
HpyAV	CCTTC	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	4, 160, 201, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 31, 213
HpyF3I	CTNAG	3 cut(s)	47, 212, 298
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	126
KroNI	GCCGGC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	20, 94, 102, 140, 170, 250, 271, 319
Lsp1109I	GCAGC	4 cut(s)	22, 211, 227, 288
LweI	GCATC	2 cut(s)	145, 147
MaeIII	GTNAC	1 cut(s)	308
MboII	GAAGA	4 cut(s)	57, 60, 131, 173
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	3 cut(s)	58, 121, 170
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	113, 147, 218, 221
Mox20I	TGGCCA	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	4 cut(s)	7, 89, 127, 237
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	10, 31, 213
NaeI	GCCGGC	1 cut(s)	128
NgoMIV	GCCGGC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	128
PkrI	GCNGC	7 cut(s)	12, 167, 218, 226, 242, 278, 289
PleI	GAGTC	3 cut(s)	57, 120, 170
PpsI	GAGTC	3 cut(s)	57, 120, 170
PstI	CTGCAG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	7 cut(s)	11, 166, 217, 225, 241, 277, 288
SchI	GAGTC	3 cut(s)	58, 121, 170
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	4 cut(s)	15, 98, 281, 330
SfaNI	GCATC	2 cut(s)	145, 147
SfcI	CTRYAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	6 cut(s)	25, 34, 163, 166, 216, 288
TaqI	TCGA	3 cut(s)	118, 252, 264
TasI	AATT	1 cut(s)	314
TauI	GCSGC	3 cut(s)	168, 219, 290
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	4 cut(s)	10, 224, 240, 276
TspGWI	ACGGA	1 cut(s)	235
XapI	RAATTY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.