Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Reverse (-)

9956740 .. 9957142

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAGCTTCCATCGGAGCTACCTCAGTGGAGTCCAACTCAGATCGCTTCGATTCTCTACTCGTCTCAGAAACCGAATGCTCGCAGTGAGGCCTCTGGTTTCTCTGTGAACTCGACCTCGTGCTCATACTTCGGCGGCGAGATTTCATGCAAAATTGGGTTTATAAAGGCGTCGGCAGAGGAGGCTCTGTTTGTGGACGTGGAGGAGGTCAGGATGGTGTGTTGTGTTGTGGTGATGAATGGGAAGCGTGGGTGTAGTGTGTTGGAGAGATGGGGAAGTAGAAGCTGGGCCATTTCCGACCAGCCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

104

Amino Acids

11.2

Weight (kDa)

6.22

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AciI	CCGC	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	170
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	7, 19, 285
AluI	AGCT	3 cut(s)	7, 19, 285
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	2 cut(s)	90, 288
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	244
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	125
BccI	CCATC	3 cut(s)	19, 208, 264
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	69
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BsaHI	GRCGYC	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	219
BseMII	CTCAG	3 cut(s)	38, 53, 80
BseRI	GAGGAG	2 cut(s)	194, 218
BseYI	CCCAGC	1 cut(s)	285
BshFI	GGCC	2 cut(s)	92, 290
BsiHKAI	GWGCWC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	92, 290
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	92, 290
BspCNI	CTCAG	3 cut(s)	37, 52, 79
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	24, 39, 66
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	92, 290
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	32, 91
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	1 cut(s)	159
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	7 cut(s)	7, 19, 92, 185, 285, 290, 304
CviKI_1	RGCY	7 cut(s)	7, 19, 92, 185, 285, 290, 304
DdeI	CTNAG	3 cut(s)	24, 39, 66
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	150
FaiI	YATR	3 cut(s)	127, 148, 164
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	2 cut(s)	92, 290
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	31, 52
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	109, 196
Hpy188I	TCNGA	4 cut(s)	16, 42, 69, 298
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	109, 196
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	3 cut(s)	24, 39, 66
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	81, 196, 271, 291
MaeII	ACGT	1 cut(s)	198
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	2 cut(s)	59, 243
MnlI	CCTC	8 cut(s)	33, 82, 103, 127, 172, 175, 196, 199
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	288
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	8 cut(s)	9, 21, 25, 119, 201, 210, 287, 310
Sse9I	AATT	1 cut(s)	153
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	50, 113
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	2 cut(s)	32, 91
TspDTI	ATGAA	3 cut(s)	17, 135, 251
TspRI	CASTG	2 cut(s)	32, 91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.