Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008109.1

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

19176 .. 19719

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008109.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtctatggtctcagcctccgattccggcaaccaccacctccgatgtggtgagattccaatcgattcaagcttgcaaaaccacgaaacggcgccgccacgcctaaagacgacgacgaagctccaatcggagctacctcactggagtccaactcagatctctcagattctctactcgtctcagaaaccgaatgctcgcagtgaggcctctggtttctctgtgaactcgacctcgtgctcatacttcggctgcgagatttcgtgcgagtcaggcagattctcagttggatcagaggttgatccaaccggtgccggagatagttttctcggtgagtttgtagctgggcttgtaaatgggttggttgtgcctgatgctgcattgcttgggaacttgtttgggtcattgactatggggcaaattggactgcccaacttgttctgttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

148

Amino Acids

15.57

Weight (kDa)

4.98

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	91, 308
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	293, 295
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	69
AluBI	AGCT	4 cut(s)	72, 121, 133, 341
AluI	AGCT	4 cut(s)	72, 121, 133, 341
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	2 cut(s)	16, 183
AlwI	GGATC	2 cut(s)	293, 295
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	249, 374
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	62, 341
BanI	GGYRCC	2 cut(s)	91, 308
BauI	CACGAG	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	236, 361
BceAI	ACGGC	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	16, 183
BfoI	RGCGCY	1 cut(s)	95
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	3 cut(s)	95, 250, 375
BlsI	GCNGC	3 cut(s)	96, 251, 376
BmiI	GGNNCC	2 cut(s)	93, 310
BmsI	GCATC	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	5 cut(s)	27, 167, 176, 194, 294
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	236, 361
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	2 cut(s)	91, 308
BshTI	ACCGGT	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	27, 306, 312
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	16, 183
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	156, 287, 298
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	5 cut(s)	26, 166, 175, 193, 293
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	93, 310
BspPI	GGATC	2 cut(s)	293, 295
BspT107I	GGYRCC	2 cut(s)	91, 308
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	305
BssMI	GATC	3 cut(s)	156, 287, 298
BssNI	GRCGYC	1 cut(s)	92
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	74, 196
BstDEI	CTNAG	5 cut(s)	13, 153, 162, 180, 280
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	159, 290, 301
BstMAI	GTCTC	2 cut(s)	16, 183
BstMBI	GATC	3 cut(s)	156, 287, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	236, 361
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	139, 205
Cac8I	GCNNGC	2 cut(s)	74, 196
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	63
CspAI	ACCGGT	1 cut(s)	305
CviJI	RGCY	8 cut(s)	17, 72, 121, 133, 206, 249, 341, 346
CviKI_1	RGCY	8 cut(s)	17, 72, 121, 133, 206, 249, 341, 346
DdeI	CTNAG	5 cut(s)	13, 153, 162, 180, 280
DinI	GGCGCC	1 cut(s)	93
DpnI	GATC	3 cut(s)	158, 289, 300
DpnII	GATC	3 cut(s)	156, 287, 298
Eco147I	AGGCCT	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	93
EheI	GGCGCC	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	183
FaiI	YATR	3 cut(s)	8, 241, 410
Fnu4HI	GCNGC	3 cut(s)	95, 250, 375
Fsp4HI	GCNGC	3 cut(s)	95, 250, 375
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	95, 250, 375
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	3 cut(s)	27, 306, 312
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	7 cut(s)	23, 55, 65, 145, 166, 266, 276
HpaII	CCGG	3 cut(s)	27, 306, 312
HphI	GGTGA	2 cut(s)	62, 341
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	7 cut(s)	22, 44, 130, 156, 165, 183, 292
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyCH4V	TGCA	2 cut(s)	76, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	5 cut(s)	13, 153, 162, 180, 280
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	1 cut(s)	92
KasI	GGCGCC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	156, 287, 298
LmnI	GCTCC	2 cut(s)	126, 130
LpnPI	CCDG	8 cut(s)	40, 127, 195, 255, 319, 325, 327, 381
Lsp1109I	GCAGC	2 cut(s)	236, 361
LweI	GCATC	1 cut(s)	361
MalI	GATC	3 cut(s)	158, 289, 300
MboI	GATC	3 cut(s)	156, 287, 298
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	417
Mly113I	GGCGCC	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	154, 275
MmeI	TCCRAC	3 cut(s)	173, 265, 326
MnlI	CCTC	7 cut(s)	28, 50, 147, 196, 217, 241, 286
MspI	CCGG	3 cut(s)	27, 306, 312
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	92
NdeII	GATC	3 cut(s)	156, 287, 298
NlaIV	GGNNCC	2 cut(s)	93, 310
PceI	AGGCCT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	5 cut(s)	23, 55, 65, 166, 276
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	96, 251, 376
PleI	GAGTC	2 cut(s)	153, 274
PluTI	GGCGCC	1 cut(s)	95
PpsI	GAGTC	2 cut(s)	153, 274
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	93, 310
PsuI	RGATCY	1 cut(s)	156
SatI	GCNGC	3 cut(s)	95, 250, 375
Sau3AI	GATC	3 cut(s)	156, 287, 298
SchI	GAGTC	2 cut(s)	154, 275
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	8 cut(s)	42, 74, 123, 135, 139, 233, 297, 343
SfaNI	GCATC	1 cut(s)	361
SfoI	GGCGCC	1 cut(s)	93
Sse9I	AATT	1 cut(s)	417
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	91
StuI	AGGCCT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	63, 227
TasI	AATT	1 cut(s)	417
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	5 cut(s)	23, 55, 65, 166, 276
TscAI	CASTG	2 cut(s)	146, 205
TseI	GCWGC	2 cut(s)	249, 374
TspRI	CASTG	2 cut(s)	146, 205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.