Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

33222542 .. 33222916

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGCCGGGACGCCTAAAGACGACGACGAAGCTCCGATCGGAGCTACCTCAGTGGAGTCCAACTCAGATCTCTTCGATTCTCTACTCGTCTCAGAAACCGAATGCTCGCAGTGAGGCCTCTGGTTTCTCTGTGAACTCGACCTCGTGCTCATACTTCAACGGCGAGATTTCATGCAAGTCAGACAGATTCTCAATTGGATCAGAGCTACCTCACTGGAGTCCAACTCAGATCTCTCCGAGAGAGTGGGTTCTTTCACCTCTTGCCCAGAATTGGGTTTATAAAGGCGTCGGCGGAGGAGGCTCTGTTTGTGGACGTGGAGGAGGTCAGGAAGGTGTGTTGTGTTGTGGTGATGAATGGGAAGCGTGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

124

Amino Acids

13.42

Weight (kDa)

7.61

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	208
AcyI	GRCGYC	3 cut(s)	5, 13, 288
AfiI	CCNNNNNNNGG	2 cut(s)	273, 274
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	317
AluBI	AGCT	3 cut(s)	34, 46, 208
AluI	AGCT	3 cut(s)	34, 46, 208
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	249, 362
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	2 cut(s)	69, 231
Bme1390I	CCNGG	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	9
BplI	GAGNNNNNCTC	4 cut(s)	49, 81, 211, 243
BpmI	CTGGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	9
BsaHI	GRCGYC	3 cut(s)	5, 13, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 274
Bse1I	ACTGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	273, 274
BseMII	CTCAG	4 cut(s)	65, 80, 107, 242
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	312, 336
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	273, 274
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	38, 69, 200, 231
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	4 cut(s)	64, 79, 106, 241
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	4 cut(s)	38, 69, 200, 231
BssNI	GRCGYC	3 cut(s)	5, 13, 288
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	3 cut(s)	5, 13, 288
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	51, 66, 93, 228
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	41, 72, 203, 234
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	4 cut(s)	38, 69, 200, 231
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	7
BstX2I	RGATCY	2 cut(s)	69, 231
BstYI	RGATCY	2 cut(s)	69, 231
BsuRI	GGCC	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	59, 118, 214
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	2 cut(s)	21, 277
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	5 cut(s)	34, 46, 119, 208, 303
CviKI_1	RGCY	5 cut(s)	34, 46, 119, 208, 303
DdeI	CTNAG	4 cut(s)	51, 66, 93, 228
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	40, 71, 202, 233
DpnII	GATC	4 cut(s)	38, 69, 200, 231
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	177
FaiI	YATR	3 cut(s)	154, 175, 282
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	238
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	2 cut(s)	21, 277
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	3 cut(s)	5, 13, 288
Hin1II	CATG	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	58, 79, 189, 220
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	249, 362
Hpy166II	GTNNAC	2 cut(s)	136, 314
Hpy188I	TCNGA	8 cut(s)	38, 43, 69, 96, 184, 205, 231, 240
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	136, 314
Hpy99I	CGWCG	3 cut(s)	28, 31, 293
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	4 cut(s)	51, 66, 93, 228
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	3 cut(s)	5, 13, 288
Hsp92II	CATG	1 cut(s)	177
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	38, 69, 200, 231
LmnI	GCTCC	2 cut(s)	39, 43
LpnPI	CCDG	5 cut(s)	21, 108, 202, 281, 314
MaeII	ACGT	1 cut(s)	316
MalI	GATC	4 cut(s)	40, 71, 202, 233
MboI	GATC	4 cut(s)	38, 69, 200, 231
MboII	GAAGA	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	69, 231
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	195, 271
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	67, 229
MmeI	TCCRAC	2 cut(s)	86, 248
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	300
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	38, 69, 200, 231
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	119
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	79, 189
Ple19I	CGATCG	1 cut(s)	41
PleI	GAGTC	2 cut(s)	66, 228
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	66, 228
PsiI	TTATAA	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	69, 231
PvuI	CGATCG	1 cut(s)	41
Sau3AI	GATC	4 cut(s)	38, 69, 200, 231
SchI	GAGTC	2 cut(s)	67, 229
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	152
SfoI	GGCGCC	1 cut(s)	6
Sse9I	AATT	2 cut(s)	195, 271
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	294
SspDI	GGCGCC	1 cut(s)	4
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	77, 140
TasI	AATT	2 cut(s)	195, 271
TfiI	GAWTC	2 cut(s)	79, 189
TscAI	CASTG	3 cut(s)	59, 118, 221
TspDTI	ATGAA	2 cut(s)	162, 369
TspRI	CASTG	3 cut(s)	59, 118, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.