Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Reverse (-)

21827686 .. 21828340

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023318

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAGCTCCGATTGGAGCTACCTCAGTGGAGTCCAACTCAGATCTCTTCGATTATTTACTCGTCTCAGAAACCGAATGCTCGTAGTGAGGCCTCTGGTTTCTCTGTGAACTCGACCTCATGCTCATATTTCGGCGGTGAGATTTCATGCAAGTCAGGCAGATTCTCAATTGGATCAGAGCTACCTCACTGGAGTCCAACTCAGATCTCTCCGAGAGAGTGGGTTCTTTCACCTCTTGCCCAGAATTGGGTTTATAAAGGCGCCAGCGGAGAAGGCTCTGTTTGTGGACGTGGAGGAGGTCAGGAAGAGATGTTGGTTATAGCTGTAGCTTTGTTTAACAGCACAAAAGTGATGAGGGCATGTGAATTAGTACTAATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

129

Amino Acids

13.89

Weight (kDa)

8.42

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	2 cut(s)	135, 267
AclWI	GGATC	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	246, 247
AjiI	CACGTC	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	5 cut(s)	7, 19, 181, 323, 329
AluI	AGCT	5 cut(s)	7, 19, 181, 323, 329
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	149, 222
BanI	GGYRCC	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	264
BglII	AGATCT	2 cut(s)	42, 204
BmcAI	AGTACT	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	262
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 184, 216
BpmI	CTGGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 247
Bse1I	ACTGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	246, 247
BseMII	CTCAG	4 cut(s)	38, 53, 80, 215
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	246, 247
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	42, 173, 204
BspACI	CCGC	2 cut(s)	135, 267
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	4 cut(s)	37, 52, 79, 214
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	42, 173, 204
BssNI	GRCGYC	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	52, 300
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	4 cut(s)	24, 39, 66, 201
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	3 cut(s)	45, 176, 207
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	42, 173, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 273
BstNSI	RCATGY	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	42, 204
BstYI	RGATCY	2 cut(s)	42, 204
BsuRI	GGCC	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	32, 187
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	3 cut(s)	120, 147, 360
CviJI	RGCY	7 cut(s)	7, 19, 92, 181, 276, 323, 329
CviKI_1	RGCY	7 cut(s)	7, 19, 92, 181, 276, 323, 329
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	4 cut(s)	24, 39, 66, 201
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	3 cut(s)	44, 175, 206
DpnII	GATC	3 cut(s)	42, 173, 204
Eam1104I	CTCTTC	2 cut(s)	52, 300
EarI	CTCTTC	2 cut(s)	52, 300
Eco147I	AGGCCT	1 cut(s)	92
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	3 cut(s)	123, 150, 363
FaiI	YATR	6 cut(s)	121, 127, 148, 255, 320, 361
FatI	CATG	3 cut(s)	119, 146, 359
GlaI	GCGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	123, 150, 363
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	31, 162, 193
HphI	GGTGA	2 cut(s)	149, 222
Hpy166II	GTNNAC	2 cut(s)	109, 287
Hpy188I	TCNGA	6 cut(s)	11, 42, 69, 178, 204, 213
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	2 cut(s)	109, 287
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	150, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 273
HpyF3I	CTNAG	4 cut(s)	24, 39, 66, 201
HpySE526I	ACGT	1 cut(s)	289
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	123, 150, 363
HspAI	GCGC	1 cut(s)	261
KasI	GGCGCC	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	42, 173, 204
LmnI	GCTCC	2 cut(s)	12, 16
LpnPI	CCDG	6 cut(s)	81, 141, 175, 254, 277, 287
MaeII	ACGT	1 cut(s)	289
MalI	GATC	3 cut(s)	44, 175, 206
MboI	GATC	3 cut(s)	42, 173, 204
MboII	GAAGA	2 cut(s)	39, 317
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	2 cut(s)	42, 204
MluCI	AATT	4 cut(s)	168, 244, 365, 375
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	40, 202
MmeI	TCCRAC	2 cut(s)	59, 221
MnlI	CCTC	9 cut(s)	33, 82, 103, 127, 195, 243, 287, 290, 348
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	156, 273
NarI	GGCGCC	1 cut(s)	261
NdeII	GATC	3 cut(s)	42, 173, 204
NlaIII	CATG	3 cut(s)	123, 150, 363
NlaIV	GGNNCC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	162
PleI	GAGTC	2 cut(s)	39, 201
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	2 cut(s)	39, 201
PsiI	TTATAA	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	42, 204
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	42, 173, 204
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	2 cut(s)	40, 202
SfcI	CTRYAG	1 cut(s)	324
SfoI	GGCGCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	168, 244, 365, 375
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	135, 267
SspDI	GGCGCC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	50, 113
TasI	AATT	4 cut(s)	168, 244, 365, 375
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	32, 194
TspDTI	ATGAA	2 cut(s)	17, 135
TspRI	CASTG	2 cut(s)	32, 194
XceI	RCATGY	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.