Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009114.1

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

2549 .. 2977

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009114.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ctgattccggcgaccaccagcacgacactctctgtctccccattcgattccgacgaccatcgcctccgatctggtgagattccaatctatctaagcttgcaaaacctcaaaaaggcgcagccacgcctgaagactacgacgaagctccgatcggagctacctcactggattccaattcagatctgtctgattctctactcgtctcataaaccaaatgctcgcagtgaggcttctggtttctctgtgaactcgacctcatgtgagtcaggcggattctcagttggatcagagagtgaggtgaggtcgagtttaaagaagaaaaggttcagcgaaactgaagagtcgtctcggaaagttactcgatcaagttgtggaagggatgcgttgaagaaagcggtcatcgtagactgcgaagttgaggtttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

142

Amino Acids

15.63

Weight (kDa)

9.16

Isoelectric Point (pI)

67.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	2 cut(s)	270, 395
AclWI	GGATC	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	149, 357
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	388
AluBI	AGCT	3 cut(s)	96, 145, 157
AluI	AGCT	3 cut(s)	96, 145, 157
Alw26I	GTCTC	3 cut(s)	40, 207, 351
AlwI	GGATC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	86, 310
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	40, 207, 351
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	83
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	3 cut(s)	40, 207, 351
BsmBI	CGTCTC	2 cut(s)	207, 351
Bsp143I	GATC	5 cut(s)	68, 149, 180, 284, 362
BspACI	CCGC	2 cut(s)	270, 395
BspCNI	CTCAG	1 cut(s)	290
BspPI	GGATC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	170
BssMI	GATC	5 cut(s)	68, 149, 180, 284, 362
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	98, 220
BstDEI	CTNAG	2 cut(s)	92, 277
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	5 cut(s)	71, 152, 183, 287, 365
BstMAI	GTCTC	3 cut(s)	40, 207, 351
BstMBI	GATC	5 cut(s)	68, 149, 180, 284, 362
BstMCI	CGRYCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	163, 229
Cac8I	GCNNGC	2 cut(s)	98, 220
CfoI	GCGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	258
CviJI	RGCY	5 cut(s)	96, 121, 145, 157, 230
CviKI_1	RGCY	5 cut(s)	96, 121, 145, 157, 230
DdeI	CTNAG	2 cut(s)	92, 277
DpnI	GATC	5 cut(s)	70, 151, 182, 286, 364
DpnII	GATC	5 cut(s)	68, 149, 180, 284, 362
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	149, 357
EcoNI	CCTNNNNNAGG	1 cut(s)	110
Esp3I	CGTCTC	2 cut(s)	207, 351
FaeI	CATG	1 cut(s)	261
FaiI	YATR	3 cut(s)	207, 259, 427
FatI	CATG	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	119
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	119
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	261
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	8 cut(s)	4, 47, 79, 169, 190, 263, 273, 341
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	86, 310
Hpy166II	GTNNAC	2 cut(s)	247, 406
Hpy188I	TCNGA	8 cut(s)	52, 68, 149, 154, 180, 189, 289, 351
Hpy8I	GTNNAC	2 cut(s)	247, 406
Hpy99I	CGWCG	2 cut(s)	56, 142
HpyAV	CCTTC	1 cut(s)	369
HpyCH4V	TGCA	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	92, 277
Hsp92II	CATG	1 cut(s)	261
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	5 cut(s)	68, 149, 180, 284, 362
LmnI	GCTCC	2 cut(s)	150, 154
LpnPI	CCDG	7 cut(s)	21, 31, 57, 140, 151, 219, 252
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	5 cut(s)	70, 151, 182, 286, 364
MboI	GATC	5 cut(s)	68, 149, 180, 284, 362
MboII	GAAGA	4 cut(s)	142, 328, 350, 400
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	272, 350
MmeI	TCCRAC	2 cut(s)	75, 262
MnlI	CCTC	8 cut(s)	74, 116, 171, 220, 265, 289, 294, 412
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	311
MspI	CCGG	1 cut(s)	8
NdeII	GATC	5 cut(s)	68, 149, 180, 284, 362
NlaIII	CATG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 408
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	6 cut(s)	4, 47, 79, 169, 190, 273
PkrI	GCNGC	1 cut(s)	120
Ple19I	CGATCG	1 cut(s)	152
PleI	GAGTC	2 cut(s)	271, 349
PpsI	GAGTC	2 cut(s)	271, 349
PsuI	RGATCY	1 cut(s)	180
PvuI	CGATCG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	5 cut(s)	68, 149, 180, 284, 362
SchI	GAGTC	2 cut(s)	272, 350
SfaNI	GCATC	1 cut(s)	370
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	270, 395
TaqI	TCGA	4 cut(s)	45, 251, 305, 361
TasI	AATT	1 cut(s)	174
TfiI	GAWTC	6 cut(s)	4, 47, 79, 169, 190, 273
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	2 cut(s)	170, 229
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	170, 229
XagI	CCTNNNNNAGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.