Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

22351217 .. 22352512

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGAAGCGTGGGTGTAGTGTGTTGGAGAGATGGGGAAGTAGAAGTTGGGCCGTTTCCGACCAGCCAGGTTGATCCAACCGGTGCCGGAGAAAGTTTTCTCGGTGAGTTTGTAGCTGGGCTTGTAAATGGGTTGGCTGTGCCTGATGCTGCATTGCTTGTGAACTTATTCAAAATAGAGATACAAGGTGTTCCACAATACAATCCTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

71

Amino Acids

7.36

Weight (kDa)

4.05

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	1 - 55	1.9e-07	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	68
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	172, 210
AjnI	CCWGG	1 cut(s)	66
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	149
AsiGI	ACCGGT	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	96, 167
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	83
BshTI	ACCGGT	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	81, 87
BsnI	GGCC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	80
CviJI	RGCY	5 cut(s)	52, 66, 116, 121, 137
CviKI_1	RGCY	5 cut(s)	52, 66, 116, 121, 137
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	2 cut(s)	81, 87
HpaII	CCGG	2 cut(s)	81, 87
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	7 cut(s)	53, 76, 80, 94, 100, 102, 156
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	136
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MluCI	AATT	1 cut(s)	211
MmeI	TCCRAC	3 cut(s)	5, 83, 101
MroXI	GAANNNNTTC	2 cut(s)	96, 167
MseI	TTAA	1 cut(s)	214
MspI	CCGG	2 cut(s)	81, 87
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	85
PdmI	GAANNNNTTC	2 cut(s)	96, 167
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	214
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	3 cut(s)	72, 118, 190
SfaNI	GCATC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	66
TasI	AATT	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TseI	GCWGC	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	96, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.