Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009290.1

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

1925 .. 2597

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgtctatggtctcagcctccgattccggcaaccaccacctccgatgtggtgagattccaatcgattcaagcttgcaaaacctcgaaacggcgccgccacgcctaaagacgacgacgaagctccaatcggagctacctcactcgagtccaactcagatctctcagattctctactcgtctcagaaaccgaatgctcgcagtgaggcctttggtttctctgtgaactcgacctcgtgctcatacttcggctgcgagatttcgtgcgagtcaggcagattctcagttggatcagaggttgatccaaccggtgccggagatagttttctcggtgagtttgtagctgggcttgtaaatgggttggctgtgcctgatgctgcattgcttgggaacttgtttgggtcattgactatggggcaaattggactgcccaacttgttctgttcccaaaccctagcacacaaagtctcaaaaattcccaagtcttcaagaaggaaaaccgtgcacatcaccatccatctccatcaagcttctgccgtgacttatcttgaaggagtgcctgcatctagggctgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

191

Amino Acids

20.15

Weight (kDa)

7.04

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	91, 308
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	293, 295
AcsI	RAATTY	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	69, 486, 548
AluBI	AGCT	5 cut(s)	72, 121, 133, 341, 527
AluI	AGCT	5 cut(s)	72, 121, 133, 341, 527
Alw21I	GWGCWC	2 cut(s)	239, 504
Alw26I	GTCTC	3 cut(s)	16, 183, 469
Alw44I	GTGCAC	1 cut(s)	500
AlwI	GGATC	2 cut(s)	293, 295
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	204
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	249, 374, 569
ApoI	RAATTY	1 cut(s)	471
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	62, 341, 499
AvaI	CYCGRG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	91, 308
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	239, 504
BbvI	GCAGC	3 cut(s)	236, 361, 556
BccI	CCATC	3 cut(s)	518, 522, 528
BceAI	ACGGC	2 cut(s)	105, 518
BcoDI	GTCTC	3 cut(s)	16, 183, 469
BfaI	CTAG	2 cut(s)	452, 564
BfoI	RGCGCY	1 cut(s)	95
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	4 cut(s)	95, 250, 375, 570
BlsI	GCNGC	4 cut(s)	96, 251, 376, 571
BmeT110I	CYCGRG	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	93, 310
BmsI	GCATC	2 cut(s)	361, 569
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
Bsa29I	ATCGAT	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	63
BseGI	GGATG	1 cut(s)	510
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	5 cut(s)	27, 167, 176, 194, 294
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	236, 361, 556
BseYI	CCCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	2 cut(s)	91, 308
BshTI	ACCGGT	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	239, 504
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	27, 306, 312
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	3 cut(s)	16, 183, 469
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	239, 504
Bsp143I	GATC	3 cut(s)	156, 287, 298
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	5 cut(s)	26, 166, 175, 193, 293
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	93, 310
BspPI	GGATC	2 cut(s)	293, 295
BspT107I	GGYRCC	2 cut(s)	91, 308
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssMI	GATC	3 cut(s)	156, 287, 298
BssNI	GRCGYC	1 cut(s)	92
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	74, 196, 558
BstDEI	CTNAG	5 cut(s)	13, 153, 162, 180, 280
BstF5I	GGATG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	159, 290, 301
BstMAI	GTCTC	3 cut(s)	16, 183, 469
BstMBI	GATC	3 cut(s)	156, 287, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 566
BstSLI	GKGCMC	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	236, 361, 556
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	74, 196, 558
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	63
CspAI	ACCGGT	1 cut(s)	305
DdeI	CTNAG	5 cut(s)	13, 153, 162, 180, 280
DinI	GGCGCC	1 cut(s)	93
DpnI	GATC	3 cut(s)	158, 289, 300
DpnII	GATC	3 cut(s)	156, 287, 298
Eco147I	AGGCCT	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	93
EheI	GGCGCC	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	183
FaiI	YATR	3 cut(s)	8, 241, 410
Fnu4HI	GCNGC	4 cut(s)	95, 250, 375, 570
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	4 cut(s)	95, 250, 375, 570
FspBI	CTAG	2 cut(s)	452, 564
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	4 cut(s)	95, 250, 375, 570
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	3 cut(s)	27, 306, 312
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	2 cut(s)	70, 525
HinfI	GANTC	7 cut(s)	23, 55, 65, 145, 166, 266, 276
HpaII	CCGG	3 cut(s)	27, 306, 312
HphI	GGTGA	3 cut(s)	62, 341, 499
Hpy166II	GTNNAC	2 cut(s)	223, 502
Hpy188I	TCNGA	7 cut(s)	22, 44, 130, 156, 165, 183, 292
Hpy188III	TCNNGA	2 cut(s)	486, 545
Hpy8I	GTNNAC	2 cut(s)	223, 502
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyAV	CCTTC	2 cut(s)	483, 542
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	76, 377, 502, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 566
HpyF3I	CTNAG	5 cut(s)	13, 153, 162, 180, 280
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	1 cut(s)	92
KasI	GGCGCC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	156, 287, 298
LmnI	GCTCC	2 cut(s)	126, 130
LpnPI	CCDG	7 cut(s)	40, 255, 319, 325, 327, 381, 570
Lsp1109I	GCAGC	3 cut(s)	236, 361, 556
LweI	GCATC	2 cut(s)	361, 569
MaeI	CTAG	2 cut(s)	452, 564
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	3 cut(s)	158, 289, 300
MboI	GATC	3 cut(s)	156, 287, 298
MboII	GAAGA	1 cut(s)	474
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	239, 504
MluCI	AATT	2 cut(s)	417, 471
Mly113I	GGCGCC	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	154, 275
MmeI	TCCRAC	3 cut(s)	173, 265, 326
MnlI	CCTC	7 cut(s)	28, 50, 92, 147, 196, 241, 286
MspI	CCGG	3 cut(s)	27, 306, 312
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	270, 566
NarI	GGCGCC	1 cut(s)	92
NdeII	GATC	3 cut(s)	156, 287, 298
NlaIV	GGNNCC	2 cut(s)	93, 310
NmuCI	GTSAC	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	5 cut(s)	23, 55, 65, 166, 276
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	96, 251, 376, 571
PleI	GAGTC	2 cut(s)	153, 274
PluTI	GGCGCC	1 cut(s)	95
PpsI	GAGTC	2 cut(s)	153, 274
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	93, 310
PspXI	VCTCGAGB	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	156
SatI	GCNGC	4 cut(s)	95, 250, 375, 570
Sau3AI	GATC	3 cut(s)	156, 287, 298
SchI	GAGTC	2 cut(s)	154, 275
SduI	GDGCHC	2 cut(s)	239, 504
SfaNI	GCATC	2 cut(s)	361, 569
SfoI	GGCGCC	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	417, 471
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	91
SspMI	CTAG	2 cut(s)	452, 564
StuI	AGGCCT	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	4 cut(s)	63, 84, 143, 227
TasI	AATT	2 cut(s)	417, 471
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	5 cut(s)	23, 55, 65, 166, 276
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	3 cut(s)	249, 374, 569
Tsp45I	GTSAC	1 cut(s)	535
TspRI	CASTG	1 cut(s)	205
VneI	GTGCAC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	142
XspI	CTAG	2 cut(s)	452, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.