Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7984262.1

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 516

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7984262.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 424 bp

gcaaccaccggcacgactctttctctccccccatccgatttcggtgaccaccgcctccgatctggtgagattccaatcgatccaagctcgcaaaacctcgaaacggcaccgccacgcctaaagacgacgacgaagctccgatcggagctacctcactggagtccaactcagatctcaccgattctctactcgtctcagaaaccgaatgctcacagtgaggcctctggtttctctgtgaactcgacctcgtgctcatacttcggcatgtgttggaaagatgaggaagtagaagttgggtcgtttctgaccagccaggttgaaccaaccggtgccggagatagttttctcgatgagtttgtagctgggcttataaatgggttggctgtgcctgatgctgcattgcttgggaacttgtttgggtcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

141

Amino Acids

14.99

Weight (kDa)

4.63

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	106, 329
AciI	CCGC	2 cut(s)	52, 110
AclWI	GGATC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	4 cut(s)	87, 136, 148, 362
AluI	AGCT	4 cut(s)	87, 136, 148, 362
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	395
AsiGI	ACCGGT	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	56, 77, 168
BanI	GGYRCC	2 cut(s)	106, 329
BauI	CACGAG	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	108, 331
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BpmI	CTGGAG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	2 cut(s)	8, 326
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	78
BseGI	GGATG	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	182, 209
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	2 cut(s)	106, 329
BshTI	ACCGGT	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	9, 327, 333
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	59, 79, 140, 171
BspACI	CCGC	2 cut(s)	52, 110
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	181, 208
BspDI	ATCGAT	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	108, 331
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	106, 329
BsrDI	GCAATG	1 cut(s)	398
BsrFI	RCCGGY	2 cut(s)	8, 326
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	2 cut(s)	8, 326
BssMI	GATC	4 cut(s)	59, 79, 140, 171
BssSI	CACGAG	1 cut(s)	247
Bst2BI	CACGAG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	168, 195
BstEII	GGTNACC	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	62, 82, 143, 174
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	4 cut(s)	59, 79, 140, 171
BstMCI	CGRYCG	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	268
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	154, 220
Cac8I	GCNNGC	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	8, 326
ClaI	ATCGAT	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	8 cut(s)	87, 136, 148, 221, 312, 362, 367, 383
CviKI_1	RGCY	8 cut(s)	87, 136, 148, 221, 312, 362, 367, 383
DdeI	CTNAG	2 cut(s)	168, 195
DpnI	GATC	4 cut(s)	61, 81, 142, 173
DpnII	GATC	4 cut(s)	59, 79, 140, 171
Eco147I	AGGCCT	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	256, 266, 371
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	3 cut(s)	9, 327, 333
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	4 cut(s)	16, 70, 160, 181
HpaII	CCGG	3 cut(s)	9, 327, 333
HphI	GGTGA	3 cut(s)	56, 77, 168
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	7 cut(s)	37, 59, 140, 145, 171, 198, 306
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	130, 133
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	168, 195
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	59, 79, 140, 171
LmnI	GCTCC	2 cut(s)	141, 145
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	61, 81, 142, 173
MboI	GATC	4 cut(s)	59, 79, 140, 171
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	10, 169
MmeI	TCCRAC	2 cut(s)	188, 251
MnlI	CCTC	7 cut(s)	65, 107, 162, 211, 232, 256, 274
MspI	CCGG	3 cut(s)	9, 327, 333
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	314
NdeII	GATC	4 cut(s)	59, 79, 140, 171
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	108, 331
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	70, 181
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	397
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	2 cut(s)	10, 168
PpsI	GAGTC	2 cut(s)	10, 168
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	108, 331
PsuI	RGATCY	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	143
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	59, 79, 140, 171
SchI	GAGTC	2 cut(s)	10, 169
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	8 cut(s)	89, 99, 138, 150, 154, 248, 318, 364
SfaNI	GCATC	1 cut(s)	382
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	2 cut(s)	52, 110
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	78, 99, 242, 348
TfiI	GAWTC	2 cut(s)	70, 181
TscAI	CASTG	2 cut(s)	161, 220
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	44
TspRI	CASTG	2 cut(s)	161, 220
XceI	RCATGY	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.