Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010911.1

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Reverse (-)

14867 .. 15494

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010911.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaaaaagttcgcttatttttcacgtctttggtctccgcctccgattccggcgaccaccagcacgactctctcaccggcacgacattctctgtccccccatctaattccgacgaccaccgcctttgatctgaaaccgaatgctcgtagtgaggcttctggtttctctgtgaaatcgacctcgtgttcgtacttcggcagcgagatttcgttagagtcagacagattctcagttggatcggagagtgaggtgaggtcgagtttaaagaagagaagcttcagcgaaactgaagagccgtctcgaaaagttactcgatcaagttatggaagagaggcggtgaagaaagcggctgtcggagacggcgaagttgtggtttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

126

Amino Acids

13.7

Weight (kDa)

9.56

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	38, 120, 335, 347
AclWI	GGATC	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	262, 309
AfaI	GTAC	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	26
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	39, 303, 351
AlwI	GGATC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	66, 262, 349
BarI	GAAGNNNNNNTAC	2 cut(s)	139, 171
BauI	CACGAG	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	2 cut(s)	280, 376
BcoDI	GTCTC	3 cut(s)	39, 303, 351
BisI	GCNGC	2 cut(s)	199, 348
BlsI	GCNGC	2 cut(s)	200, 349
BmgBI	CACGTC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	50, 77
BslFI	GGGAC	1 cut(s)	79
BsmAI	GTCTC	3 cut(s)	39, 303, 351
BsmBI	CGTCTC	2 cut(s)	303, 351
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	127, 236, 314
BspACI	CCGC	4 cut(s)	38, 120, 335, 347
BspCNI	CTCAG	1 cut(s)	242
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	3 cut(s)	127, 236, 314
BssSI	CACGAG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	263, 285, 322
BstDEI	CTNAG	1 cut(s)	229
BstKTI	GATC	3 cut(s)	130, 239, 317
BstMAI	GTCTC	3 cut(s)	39, 303, 351
BstMBI	GATC	3 cut(s)	127, 236, 314
BstV1I	GCAGC	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviJI	RGCY	4 cut(s)	155, 276, 295, 350
CviKI_1	RGCY	4 cut(s)	155, 276, 295, 350
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	3 cut(s)	129, 238, 316
DpnII	GATC	3 cut(s)	127, 236, 314
DraI	TTTAAA	1 cut(s)	264
Eam1104I	CTCTTC	3 cut(s)	263, 285, 322
EarI	CTCTTC	3 cut(s)	263, 285, 322
EciI	GGCGGA	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	262, 309
Esp3I	CGTCTC	2 cut(s)	303, 351
FaiI	YATR	2 cut(s)	324, 379
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	199, 348
Fsp4HI	GCNGC	2 cut(s)	199, 348
GluI	GCNGC	2 cut(s)	199, 348
HapII	CCGG	2 cut(s)	50, 77
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	4 cut(s)	46, 67, 215, 225
HpaII	CCGG	2 cut(s)	50, 77
HphI	GGTGA	3 cut(s)	66, 262, 349
Hpy188I	TCNGA	6 cut(s)	45, 111, 132, 220, 241, 356
Hpy188III	TCNNGA	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	127, 236, 314
LguI	GCTCTTC	1 cut(s)	285
LpnPI	CCDG	4 cut(s)	63, 73, 90, 144
Lsp1109I	GCAGC	1 cut(s)	210
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	3 cut(s)	129, 238, 316
MboI	GATC	3 cut(s)	127, 236, 314
MboII	GAAGA	4 cut(s)	280, 302, 339, 352
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	61, 224
MmeI	TCCRAC	3 cut(s)	134, 214, 334
MnlI	CCTC	6 cut(s)	51, 145, 190, 241, 246, 325
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	263
MspI	CCGG	2 cut(s)	50, 77
Mva1269I	GAATGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	127, 236, 314
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	46, 225
PkrI	GCNGC	2 cut(s)	200, 349
PleI	GAGTC	2 cut(s)	61, 223
PpsI	GAGTC	2 cut(s)	61, 223
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	199, 348
Sau3AI	GATC	3 cut(s)	127, 236, 314
SchI	GAGTC	2 cut(s)	61, 224
SetI	ASST	5 cut(s)	28, 182, 252, 257, 278
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	4 cut(s)	38, 120, 335, 347
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	4 cut(s)	176, 257, 301, 313
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	46, 225
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	17, 366
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.