Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

57097976 .. 57098526

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAGCTCCGATCGGAGCTACCTCAGTGGAGTCCAACTCAGATCTCTTCGATTCTCTACTCGTCTCAGAAACCGAAAGCTCGCAGTGAGGCCTTTGGTTTCTCTGTGAACTCGACCTCGTGCTCATACTTCGGCGGCGAGATTTCATGCAAGTCAGGCAGATTCTCAGTTGGATCAGAGCTACCTCACTGGAGTCCAACTCAGATCTCTCCGAGAGAGTGGGTTCTTTCACCTCTTGCCCAGAATTGGGTTTATAAAGGCGTCGGTGGAGGAGGCTCTGTTTGTGGACGTGGAGGAGAAGTTGGGCCGTTTCCGACCAGCCAGGTTGATCCAACTGGTGCCGGAGAAAGTTTTCTCGGTGAGTTTGTAGCTGGGCTTGTAAATGGGTTGGTTGTGCCTGATGCTGCATTGCTTGTGAACTTGTTTGGGTCATTGATTGTGGGGCAAATTGGACTACCCAACTCGTTATGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

159

Amino Acids

16.54

Weight (kDa)

6.55

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	99 - 153	1.6e-07	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	338
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	181, 323
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	246, 247
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	5 cut(s)	7, 19, 80, 181, 371
AluI	AGCT	5 cut(s)	7, 19, 80, 181, 371
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	181, 323
AoxI	GGCC	2 cut(s)	90, 305
ApeKI	GCWGC	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	222, 371
BanI	GGYRCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	69
BglII	AGATCT	2 cut(s)	42, 204
BisI	GCNGC	2 cut(s)	136, 405
BlsI	GCNGC	2 cut(s)	137, 406
Bme1390I	CCNGG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	391
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 184, 216
BpmI	CTGGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	261
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 285, 294, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 247
Bse1I	ACTGG	2 cut(s)	194, 340
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	2 cut(s)	246, 247
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	5 cut(s)	38, 53, 80, 180, 215
BseNI	ACTGG	2 cut(s)	194, 340
BseRI	GAGGAG	2 cut(s)	285, 309
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	92, 307
BshNI	GGYRCC	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	246, 247
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	92, 307
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	11, 42, 173, 204, 328
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	92, 307
BspCNI	CTCAG	5 cut(s)	37, 52, 79, 179, 214
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	181, 323
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	194, 340
BssMI	GATC	5 cut(s)	11, 42, 173, 204, 328
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	5 cut(s)	24, 39, 66, 166, 201
BstKTI	GATC	5 cut(s)	14, 45, 176, 207, 331
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	5 cut(s)	11, 42, 173, 204, 328
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	2 cut(s)	42, 204
BstYI	RGATCY	2 cut(s)	42, 204
BsuRI	GGCC	2 cut(s)	92, 307
BtrI	CACGTC	1 cut(s)	290
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	32, 91, 187
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	250
CviAII	CATG	1 cut(s)	147
DdeI	CTNAG	5 cut(s)	24, 39, 66, 166, 201
DpnI	GATC	5 cut(s)	13, 44, 175, 206, 330
DpnII	GATC	5 cut(s)	11, 42, 173, 204, 328
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	150
FaiI	YATR	4 cut(s)	127, 148, 255, 469
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	136, 405
Fsp4HI	GCNGC	2 cut(s)	136, 405
GluI	GCNGC	2 cut(s)	136, 405
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	92, 307
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	150
HinfI	GANTC	4 cut(s)	31, 52, 162, 193
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	222, 371
Hpy166II	GTNNAC	3 cut(s)	109, 287, 418
Hpy188I	TCNGA	8 cut(s)	11, 16, 42, 69, 178, 204, 213, 315
Hpy8I	GTNNAC	3 cut(s)	109, 287, 418
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	150, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	5 cut(s)	24, 39, 66, 166, 201
HpySE526I	ACGT	1 cut(s)	289
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	11, 42, 173, 204, 328
LmnI	GCTCC	2 cut(s)	12, 16
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	289
MalI	GATC	5 cut(s)	13, 44, 175, 206, 330
MboI	GATC	5 cut(s)	11, 42, 173, 204, 328
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	2 cut(s)	42, 204
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	244, 447
MlyI	GAGTC	2 cut(s)	40, 202
MmeI	TCCRAC	5 cut(s)	59, 151, 221, 338, 356
MnlI	CCTC	8 cut(s)	33, 82, 127, 195, 243, 263, 266, 287
MroXI	GAANNNNTTC	1 cut(s)	351
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	5 cut(s)	11, 42, 173, 204, 328
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	52, 162
PkrI	GCNGC	2 cut(s)	137, 406
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	39, 201
PpsI	GAGTC	2 cut(s)	39, 201
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	42, 204
PvuI	CGATCG	1 cut(s)	14
SatI	GCNGC	2 cut(s)	136, 405
Sau3AI	GATC	5 cut(s)	11, 42, 173, 204, 328
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	40, 202
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	244, 447
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	321
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	50, 113
TasI	AATT	2 cut(s)	244, 447
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	52, 162
TscAI	CASTG	3 cut(s)	32, 91, 194
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	17, 135
TspRI	CASTG	3 cut(s)	32, 91, 194
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.