Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010461

Physical Location & Seq

Genomic Coordinates Reverse (-)

10883054 .. 10884144

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCGTCGACCATGGCTACTGCTGTTGGTATTTTGTGTGCCTCTGCTACAACGGGTCAACTCGCACGAAGAGTCGGGTGAATGGAGCTGCGAGTCCGACTCAGACATCCGAATCCAGGCCCAGTTCGGGCCAGGCCTTATCACCCTCGATGGTCACGCCGACGATTGGAAGGACACGGATGGGTCCGAGTTCTCTCTTCTCCCTGCTCTTGACCCAGATGCTGAAACCGAATACACAGGTGGAAAGATGACCGTCAAGGCTTTGCATGATGGCCGTGATGTCTTCTTTATGGTTCAAGTTGATGGGGATTACGCATTTACGCTTACTCAAAAGGAAGGAGTTGACTCTTGCACAAACAAGACTTGCAAATCCCATGAAGTTGACATTATGCATTTCTCTATTGGAAATGCAATTCCTGGACGTCTCTATGGTGGTAACCCAGTGGACAACAGGGATGGAAATGGAGGTGACAGGTTTGGTCATTTGAATGATCTTTATGGTTGGAACCCACACTGTAGATACCTAGATGGAATTAGCTCTTCAGCAAATGATTCTAGCGCACAAAATGATTGGAAAGGCGCTTGGTGGCACAGTAGCTTGAATGTTCACTCAGGTTTTGTGGAAGAAGATAGTCCTTATGCATCAGATGGTCAAAAGGGTACATACTATTTTGAATTCTCTAGGCCTTTGAGAACTATGGATCGCCTCCAACAGGATGCTCAATTCACAATTGGCGGATCAAGTAAGATGTCAGTTGCATTCTGGTATCCTGTTGATGGAAAACCATGGCATGGCTCTGGACACTATTCTGATAGCTGTGATTGGGTTCCCTTGGATATATCTATGAAAATCTCTATGCTAACAAAGGTGAAACAAAGTAGTTCAGTCAGTGCTGCTAGTGTTTTTGCCCTTTTGCTATCAGTAATCTCATTATGTGTTTCTGTTTTTATCGGGTATTGGGTTGTCAAACCCAAAACTATCCCCTTCACACCCATGGAAAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EB_dh

Protein Analysis

336

Amino Acids

37.28

Weight (kDa)

4.99

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EB_dh	PF09459	54 - 105	8.3e-06	Ethylbenzene dehydrogenase
EB_dh	PF09459	97 - 270	7.2e-22	Ethylbenzene dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62370
fragaria_vesca	FvH4_2g00030 FvH4_2g00030 FvH4_2g00030 FvH4_2g00030
malus_domestica	MD07G1000100.v1.1
prunus_persica	Prupe.8G000200_v2.0.a1
pyrus_communis	pycom1315g00050 pycom1315g00060
rosa_chinensis	RchiOBHm_Chr6g0249301
rosa_laevigata	RLG00000006830 RLG00000015594
rosa_multiflora	Rmu_sc0000096.1_g000007 Rmu_sc0006234.1_g000032
rosa_roxburghii	Rroxscaffold_7G00217880
rosa_rugosa	Rorug05G0489900
rosa_samantha	Rh6AG001000 Rh6BG009200 Rh6CG000200 Rh6DG000100
rosa_wichuraiana	Rw6G000170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	7
AciI	CCGC	1 cut(s)	735
AclWI	GGATC	2 cut(s)	708, 745
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	6 cut(s)	115, 126, 165, 712, 776, 791
AgsI	TTSAA	4 cut(s)	296, 487, 601, 674
AjnI	CCWGG	3 cut(s)	114, 130, 415
AluBI	AGCT	4 cut(s)	87, 537, 597, 816
AluI	AGCT	4 cut(s)	87, 537, 597, 816
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	708, 745
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	5 cut(s)	117, 128, 133, 271, 683
ApeKI	GCWGC	2 cut(s)	87, 893
ApoI	RAATTY	1 cut(s)	674
AspLEI	GCGC	2 cut(s)	560, 581
AspS9I	GGNCC	3 cut(s)	118, 128, 183
AsuHPI	GGTGA	4 cut(s)	89, 133, 479, 880
AvaII	GGWCC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	74, 880
BccI	CCATC	8 cut(s)	143, 173, 263, 296, 449, 521, 641, 770
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	3 cut(s)	116, 132, 417
BciVI	GTATCC	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	4 cut(s)	524, 555, 681, 897
BfmI	CTRYAG	1 cut(s)	514
BfoI	RGCGCY	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	2 cut(s)	88, 894
BlsI	GCNGC	2 cut(s)	89, 895
Bme1390I	CCNGG	3 cut(s)	116, 132, 417
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	118, 128, 183
BmiI	GGNNCC	3 cut(s)	184, 506, 828
BmrFI	CCNGG	3 cut(s)	116, 132, 417
BmrI	ACTGGG	2 cut(s)	115, 434
BmsI	GCATC	3 cut(s)	208, 650, 706
BmuI	ACTGGG	2 cut(s)	115, 434
BpiI	GAAGAC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	4 cut(s)	11, 785, 831, 993
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 126, 165, 712, 776, 791
Bse1I	ACTGG	2 cut(s)	121, 440
BseBI	CCWGG	3 cut(s)	116, 132, 417
BseDI	CCNNGG	4 cut(s)	11, 785, 831, 993
BseGI	GGATG	4 cut(s)	105, 184, 460, 721
BseLI	CCNNNNNNNGG	6 cut(s)	115, 126, 165, 712, 776, 791
BseMII	CTCAG	2 cut(s)	114, 624
BseNI	ACTGG	2 cut(s)	121, 440
BseXI	GCAGC	2 cut(s)	74, 880
BshFI	GGCC	5 cut(s)	119, 130, 135, 273, 685
BslI	CCNNNNNNNGG	6 cut(s)	115, 126, 165, 712, 776, 791
BsmAI	GTCTC	1 cut(s)	428
BsmBI	CGTCTC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	5 cut(s)	119, 130, 135, 273, 685
Bsp143I	GATC	3 cut(s)	490, 700, 737
Bsp19I	CCATGG	3 cut(s)	11, 785, 993
BspACI	CCGC	1 cut(s)	735
BspANI	GGCC	5 cut(s)	119, 130, 135, 273, 685
BspCNI	CTCAG	2 cut(s)	113, 623
BspLI	GGNNCC	3 cut(s)	184, 506, 828
BspPI	GGATC	2 cut(s)	708, 745
BspQI	GCTCTTC	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	121, 440
BssECI	CCNNGG	4 cut(s)	11, 785, 831, 993
BssMI	GATC	3 cut(s)	490, 700, 737
BssNI	GRCGYC	1 cut(s)	421
BssT1I	CCWWGG	4 cut(s)	11, 785, 831, 993
Bst2UI	CCWGG	3 cut(s)	116, 132, 417
Bst4CI	ACNGT	3 cut(s)	253, 515, 593
Bst6I	CTCTTC	3 cut(s)	63, 201, 544
BstACI	GRCGYC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	100, 610
BstDSI	CCRYGG	3 cut(s)	11, 785, 993
BstEII	GGTNACC	1 cut(s)	434
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	105, 184, 460, 721
BstH2I	RGCGCY	1 cut(s)	582
BstHHI	GCGC	2 cut(s)	560, 581
BstKTI	GATC	3 cut(s)	493, 703, 740
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	3 cut(s)	490, 700, 737
BstNI	CCWGG	3 cut(s)	116, 132, 417
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	3 cut(s)	114, 130, 415
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	74, 880
BstV2I	GAAGAC	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	5 cut(s)	119, 130, 135, 273, 685
BtgI	CCRYGG	3 cut(s)	11, 785, 993
BtsCI	GGATG	4 cut(s)	105, 184, 460, 721
BtsIMutI	CAGTG	3 cut(s)	447, 511, 895
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	2 cut(s)	560, 581
Cfr13I	GGNCC	3 cut(s)	118, 128, 183
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	6 cut(s)	12, 266, 374, 786, 791, 994
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	2 cut(s)	100, 610
DpnI	GATC	3 cut(s)	492, 702, 739
DpnII	GATC	3 cut(s)	490, 700, 737
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	63, 201, 544
EarI	CTCTTC	3 cut(s)	63, 201, 544
EciI	GGCGGA	1 cut(s)	750
Eco130I	CCWWGG	4 cut(s)	11, 785, 831, 993
Eco147I	AGGCCT	2 cut(s)	135, 685
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	434
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	674
EcoRII	CCWGG	3 cut(s)	114, 130, 415
EcoT14I	CCWWGG	4 cut(s)	11, 785, 831, 993
EcoT22I	ATGCAT	2 cut(s)	393, 643
ErhI	CCWWGG	4 cut(s)	11, 785, 831, 993
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	6 cut(s)	15, 269, 377, 789, 794, 997
FatI	CATG	6 cut(s)	11, 265, 373, 785, 790, 993
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	88, 894
FokI	GGATG	4 cut(s)	92, 191, 467, 728
Fsp4HI	GCNGC	2 cut(s)	88, 894
FspBI	CTAG	4 cut(s)	524, 555, 681, 897
GlaI	GCGC	2 cut(s)	559, 580
GluI	GCNGC	2 cut(s)	88, 894
HaeII	RGCGCY	1 cut(s)	582
HaeIII	GGCC	5 cut(s)	119, 130, 135, 273, 685
HhaI	GCGC	2 cut(s)	560, 581
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	6 cut(s)	15, 269, 377, 789, 794, 997
Hin6I	GCGC	2 cut(s)	558, 579
HinP1I	GCGC	2 cut(s)	558, 579
HincII	GTYRAC	4 cut(s)	8, 58, 343, 382
HindII	GTYRAC	4 cut(s)	8, 58, 343, 382
HinfI	GANTC	6 cut(s)	71, 92, 98, 111, 344, 551
HphI	GGTGA	4 cut(s)	89, 133, 479, 880
Hpy166II	GTNNAC	6 cut(s)	8, 58, 343, 382, 445, 607
Hpy188I	TCNGA	6 cut(s)	97, 103, 110, 187, 646, 811
Hpy188III	TCNNGA	2 cut(s)	209, 798
Hpy8I	GTNNAC	6 cut(s)	8, 58, 343, 382, 445, 607
Hpy99I	CGWCG	2 cut(s)	9, 164
HpyAV	CCTTC	3 cut(s)	163, 329, 994
HpyCH4III	ACNGT	3 cut(s)	253, 515, 593
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	7 cut(s)	265, 351, 366, 391, 410, 641, 758
HpyF3I	CTNAG	2 cut(s)	100, 610
HpySE526I	ACGT	1 cut(s)	421
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	6 cut(s)	15, 269, 377, 789, 794, 997
HspAI	GCGC	2 cut(s)	558, 579
Kzo9I	GATC	3 cut(s)	490, 700, 737
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	2 cut(s)	74, 880
LweI	GCATC	3 cut(s)	208, 650, 706
MaeI	CTAG	4 cut(s)	524, 555, 681, 897
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	152, 434, 467
MalI	GATC	3 cut(s)	492, 702, 739
MboI	GATC	3 cut(s)	490, 700, 737
MboII	GAAGA	6 cut(s)	80, 188, 274, 531, 635, 638
MfeI	CAATTG	1 cut(s)	729
MluCI	AATT	5 cut(s)	411, 531, 674, 722, 729
MlyI	GAGTC	4 cut(s)	80, 92, 101, 338
MmeI	TCCRAC	3 cut(s)	120, 482, 733
MnlI	CCTC	4 cut(s)	51, 155, 458, 716
Mph1103I	ATGCAT	2 cut(s)	393, 643
MseI	TTAA	1 cut(s)	1006
MslI	CAYNNNNRTG	2 cut(s)	486, 992
MspR9I	CCNGG	3 cut(s)	116, 132, 417
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	3 cut(s)	116, 132, 417
NcoI	CCATGG	3 cut(s)	11, 785, 993
NdeII	GATC	3 cut(s)	490, 700, 737
NlaIII	CATG	6 cut(s)	15, 269, 377, 789, 794, 997
NlaIV	GGNNCC	3 cut(s)	184, 506, 828
NmuCI	GTSAC	2 cut(s)	152, 467
NsiI	ATGCAT	2 cut(s)	393, 643
PceI	AGGCCT	2 cut(s)	135, 685
PciSI	GCTCTTC	1 cut(s)	544
PctI	GAATGC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	111, 551
PflMI	CCANNNNNTGG	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	2 cut(s)	89, 895
PleI	GAGTC	4 cut(s)	79, 92, 100, 338
PpsI	GAGTC	4 cut(s)	79, 92, 100, 338
Psp6I	CCWGG	3 cut(s)	114, 130, 415
PspEI	GGTNACC	1 cut(s)	434
PspGI	CCWGG	3 cut(s)	114, 130, 415
PspN4I	GGNNCC	3 cut(s)	184, 506, 828
PspPI	GGNCC	3 cut(s)	118, 128, 183
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	2 cut(s)	486, 992
SalI	GTCGAC	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	1006
SatI	GCNGC	2 cut(s)	88, 894
Sau3AI	GATC	3 cut(s)	490, 700, 737
Sau96I	GGNCC	3 cut(s)	118, 128, 183
SchI	GAGTC	4 cut(s)	80, 92, 101, 338
ScrFI	CCNGG	3 cut(s)	116, 132, 417
SfaNI	GCATC	3 cut(s)	208, 650, 706
SfcI	CTRYAG	1 cut(s)	514
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	486, 992
Sse9I	AATT	5 cut(s)	411, 531, 674, 722, 729
SseBI	AGGCCT	2 cut(s)	135, 685
SsiI	CCGC	1 cut(s)	735
SspMI	CTAG	4 cut(s)	524, 555, 681, 897
StuI	AGGCCT	2 cut(s)	135, 685
StyD4I	CCNGG	3 cut(s)	114, 130, 415
StyI	CCWWGG	4 cut(s)	11, 785, 831, 993
TaaI	ACNGT	3 cut(s)	253, 515, 593
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	7, 147
TasI	AATT	5 cut(s)	411, 531, 674, 722, 729
TfiI	GAWTC	2 cut(s)	111, 551
Tru1I	TTAA	1 cut(s)	1006
Tru9I	TTAA	1 cut(s)	1006
TscAI	CASTG	3 cut(s)	447, 518, 895
TseFI	GTSAC	2 cut(s)	152, 467
TseI	GCWGC	2 cut(s)	87, 893
Tsp45I	GTSAC	2 cut(s)	152, 467
TspDTI	ATGAA	2 cut(s)	390, 860
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	447, 518, 895
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	4 cut(s)	524, 555, 681, 897
ZraI	GACGTC	1 cut(s)	422
Zsp2I	ATGCAT	2 cut(s)	393, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.