Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006234.1

Orthogroup ID

OG0010461

Physical Location & Seq

Genomic Coordinates Forward (+)

108471 .. 112230

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006234.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgtttcaaattggtgaagctgcaacttatcataatatgggcggctgtaaggaaggagttgactcttgcacaaacaagacttgcaaatcccatgaagttgacattatgcatttctctattggaaatgcaattcctggacgtctctatggtggtaacccagtggacaacagggatggaaatggaggtgacaggtttggtcatttgaatgatctttatggttggaacccacactgtagatacctagatggaattagctcttcagcaaatgattctagtgcacaaaatgattggaaaggcgcttggtggcacagtagcttgaatgttcactcaggttttgtggaagaagatagtccttatgcatcagatggtcaaaagggtacatactattttgaattctctaggcctttgagaactatggatcgcctccaacaggatgctcaattcacaattggcggatcaagtaagatgtcagttgcattctggtatcctgttgatggaaaatcatggcatggctctggacactattctgttagctgtgactgggttcccttggatatatctatgaaaatctctatgctaacaaaggtgaaacaaagtagttcagtcagtgctgctagtgtttttgcccttttgctatcagtaatctcattatgtgtttctgtttttatcgggtattgggttgtcaaacccaaaactatccccttcacacccatggaaaatctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EB_dh

Protein Analysis

241

Amino Acids

26.62

Weight (kDa)

6.11

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62370
fragaria_vesca	FvH4_2g00030 FvH4_2g00030 FvH4_2g00030 FvH4_2g00030
malus_domestica	MD07G1000100.v1.1
prunus_persica	Prupe.8G000200_v2.0.a1
pyrus_communis	pycom1315g00050 pycom1315g00060
rosa_chinensis	RchiOBHm_Chr6g0249301
rosa_laevigata	RLG00000006830 RLG00000015594
rosa_multiflora	Rmu_sc0000096.1_g000007 Rmu_sc0006234.1_g000032
rosa_roxburghii	Rroxscaffold_7G00217880
rosa_rugosa	Rorug05G0489900
rosa_samantha	Rh6AG001000 Rh6BG009200 Rh6CG000200 Rh6DG000100
rosa_wichuraiana	Rw6G000170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	142
AciI	CCGC	2 cut(s)	42, 453
AclWI	GGATC	2 cut(s)	426, 463
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	430, 494
AgsI	TTSAA	4 cut(s)	8, 205, 319, 392
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	4 cut(s)	20, 255, 315, 534
AluI	AGCT	4 cut(s)	20, 255, 315, 534
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	426, 463
AoxI	GGCC	1 cut(s)	401
ApaLI	GTGCAC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	20, 611
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	26, 197, 598
BaeGI	GKGCMC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	7, 598
BccI	CCATC	4 cut(s)	167, 239, 359, 488
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	4 cut(s)	242, 273, 399, 615
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	3 cut(s)	21, 43, 612
BlsI	GCNGC	3 cut(s)	22, 44, 613
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	224, 546
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	2 cut(s)	152, 550
BmsI	GCATC	2 cut(s)	368, 424
BmuI	ACTGGG	2 cut(s)	152, 550
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	549, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 494
Bse1I	ACTGG	2 cut(s)	158, 545
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	549, 711
BseGI	GGATG	2 cut(s)	178, 439
BseLI	CCNNNNNNNGG	2 cut(s)	430, 494
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	158, 545
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	7, 598
BshFI	GGCC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	430, 494
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	208, 418, 455
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	2 cut(s)	42, 453
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	224, 546
BspPI	GGATC	2 cut(s)	426, 463
BspQI	GCTCTTC	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	158, 545
BssECI	CCNNGG	2 cut(s)	549, 711
BssMI	GATC	3 cut(s)	208, 418, 455
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	2 cut(s)	549, 711
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	233, 311
Bst6I	CTCTTC	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	328
BstDSI	CCRYGG	1 cut(s)	711
BstEII	GGTNACC	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	178, 439
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	211, 421, 458
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	208, 418, 455
BstNI	CCWGG	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	7, 598
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	2 cut(s)	178, 439
BtsIMutI	CAGTG	3 cut(s)	165, 229, 613
CfoI	GCGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	4 cut(s)	92, 504, 509, 712
CviJI	RGCY	7 cut(s)	20, 45, 255, 315, 403, 513, 534
CviKI_1	RGCY	7 cut(s)	20, 45, 255, 315, 403, 513, 534
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	3 cut(s)	210, 420, 457
DpnII	GATC	3 cut(s)	208, 418, 455
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	549, 711
Eco147I	AGGCCT	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	549, 711
EcoT22I	ATGCAT	2 cut(s)	111, 361
ErhI	CCWWGG	2 cut(s)	549, 711
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	4 cut(s)	95, 507, 512, 715
FatI	CATG	4 cut(s)	91, 503, 508, 711
Fnu4HI	GCNGC	3 cut(s)	21, 43, 612
FokI	GGATG	2 cut(s)	185, 446
Fsp4HI	GCNGC	3 cut(s)	21, 43, 612
FspBI	CTAG	4 cut(s)	242, 273, 399, 615
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	3 cut(s)	21, 43, 612
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	403
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	95, 507, 512, 715
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	2 cut(s)	61, 100
HindII	GTYRAC	2 cut(s)	61, 100
HinfI	GANTC	2 cut(s)	62, 269
HphI	GGTGA	3 cut(s)	26, 197, 598
Hpy166II	GTNNAC	5 cut(s)	61, 100, 163, 278, 325
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	5 cut(s)	61, 100, 163, 278, 325
HpyAV	CCTTC	2 cut(s)	47, 712
HpyCH4III	ACNGT	2 cut(s)	233, 311
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	8 cut(s)	23, 69, 84, 109, 128, 278, 359, 476
HpyF3I	CTNAG	1 cut(s)	328
HpySE526I	ACGT	1 cut(s)	139
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	95, 507, 512, 715
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	208, 418, 455
LguI	GCTCTTC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	7, 598
LweI	GCATC	2 cut(s)	368, 424
MaeI	CTAG	4 cut(s)	242, 273, 399, 615
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	3 cut(s)	152, 185, 536
MalI	GATC	3 cut(s)	210, 420, 457
MboI	GATC	3 cut(s)	208, 418, 455
MboII	GAAGA	3 cut(s)	249, 353, 356
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	6 cut(s)	9, 129, 249, 392, 440, 447
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	200, 451
MnlI	CCTC	2 cut(s)	176, 434
Mph1103I	ATGCAT	2 cut(s)	111, 361
MseI	TTAA	1 cut(s)	724
MslI	CAYNNNNRTG	2 cut(s)	204, 710
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	3 cut(s)	208, 418, 455
NlaIII	CATG	4 cut(s)	95, 507, 512, 715
NlaIV	GGNNCC	2 cut(s)	224, 546
NmuCI	GTSAC	2 cut(s)	185, 536
NsiI	ATGCAT	2 cut(s)	111, 361
PceI	AGGCCT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	22, 44, 613
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	224, 546
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	204, 710
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	724
SatI	GCNGC	3 cut(s)	21, 43, 612
Sau3AI	GATC	3 cut(s)	208, 418, 455
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	2 cut(s)	368, 424
SfcI	CTRYAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	204, 710
Sse9I	AATT	6 cut(s)	9, 129, 249, 392, 440, 447
SseBI	AGGCCT	1 cut(s)	403
SsiI	CCGC	2 cut(s)	42, 453
SspMI	CTAG	4 cut(s)	242, 273, 399, 615
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	549, 711
TaaI	ACNGT	2 cut(s)	233, 311
TaiI	ACGT	1 cut(s)	142
TasI	AATT	6 cut(s)	9, 129, 249, 392, 440, 447
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	3 cut(s)	165, 236, 613
TseFI	GTSAC	2 cut(s)	185, 536
TseI	GCWGC	2 cut(s)	20, 611
Tsp45I	GTSAC	2 cut(s)	185, 536
TspDTI	ATGAA	2 cut(s)	108, 578
TspRI	CASTG	3 cut(s)	165, 236, 613
VneI	GTGCAC	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	392
XspI	CTAG	4 cut(s)	242, 273, 399, 615
ZraI	GACGTC	1 cut(s)	140
Zsp2I	ATGCAT	2 cut(s)	111, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.