Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000096.1

Orthogroup ID

OG0010461

Physical Location & Seq

Genomic Coordinates Reverse (-)

24934 .. 29461

Gene Structure 4528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000096.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgcttcgaccatggctactgctgttagtattttgtgtgcctctgctacaacgggtcaactcgcacgaagagtcgggtgaatggagctgcgagtccgactcagacatccgaatccaggcccagttcgggcccggccttatcaccctcgatggtcacgccgacgattggaaggacacggatgggtccgagttctctcttctccctgctcttgacccagatgctgaaactgaatacacaggtggaaagatgaccgtcaaggctttgcatgatggccgtgatgtcttctttatggttcaagttgatggggattacgcttactcaaaaggtgagaataccaaatgcccatctgttgccctcatgtttcaaattggtgaagctgcaacttatcataatatgggcggctgtaaggaaggagttgactcttgcacaaacaagacttgcaaatcccatgaagttgacattatgcatttctctattggaaatgcaattcctggacgtctctatggtggtaacccagtggacaacagggatggaaatggaggtgacaggtttggtcatttgaatgatctttatggttggaacccacactgtagatacctagatggaattagctcttcagcaaatgattctagtgcacaaaatgattggaaaggcgcttggtggcacagtagcttgaatgttcactcaggttttgtggaagaagatagtccttatgcatcagatggtcaaaagggtacatactattttgaattctctaggcctttgagaactatggatcgcctccaacaggatgctcaattcacaattggcggatcaagtaagatgtcagttgcattctggtatcctgttgatggaaaatcatggcatggctctggacactattctgttagctgtgactgggttcccttggatatatctatgaaaatctctatgctaacaaaggtgaaacaaagtagttcagtcagtgctgctagtgtttttgcccttttgctatcagtaatctcattatgtgtttctgtttttatcgggtattgggttgtcaaacccaaaactatccccttcacacccatggaaaatctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EB_dh

Protein Analysis

360

Amino Acids

39.81

Weight (kDa)

5.08

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62370
fragaria_vesca	FvH4_2g00030 FvH4_2g00030 FvH4_2g00030 FvH4_2g00030
malus_domestica	MD07G1000100.v1.1
prunus_persica	Prupe.8G000200_v2.0.a1
pyrus_communis	pycom1315g00050 pycom1315g00060
rosa_chinensis	RchiOBHm_Chr6g0249301
rosa_laevigata	RLG00000006830 RLG00000015594
rosa_multiflora	Rmu_sc0000096.1_g000007 Rmu_sc0006234.1_g000032
rosa_roxburghii	Rroxscaffold_7G00217880
rosa_rugosa	Rorug05G0489900
rosa_samantha	Rh6AG001000 Rh6BG009200 Rh6CG000200 Rh6DG000100
rosa_wichuraiana	Rw6G000170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	499
AciI	CCGC	2 cut(s)	399, 810
AclWI	GGATC	2 cut(s)	783, 820
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	496
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	5 cut(s)	115, 126, 165, 787, 851
AgsI	TTSAA	5 cut(s)	296, 365, 562, 676, 749
AjnI	CCWGG	2 cut(s)	114, 490
AluBI	AGCT	5 cut(s)	87, 377, 612, 672, 891
AluI	AGCT	5 cut(s)	87, 377, 612, 672, 891
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	1 cut(s)	503
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	783, 820
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	5 cut(s)	117, 128, 133, 271, 758
ApaI	GGGCCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	3 cut(s)	87, 377, 968
ApoI	RAATTY	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	4 cut(s)	118, 128, 129, 183
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	6 cut(s)	89, 133, 338, 383, 554, 955
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	2 cut(s)	132, 637
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	3 cut(s)	74, 364, 955
BccI	CCATC	9 cut(s)	143, 173, 263, 296, 352, 524, 596, 716, 845
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	116, 492
BciVI	GTATCC	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	4 cut(s)	599, 630, 756, 972
BfmI	CTRYAG	1 cut(s)	589
BfoI	RGCGCY	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	4 cut(s)	88, 378, 400, 969
BlsI	GCNGC	4 cut(s)	89, 379, 401, 970
Bme1390I	CCNGG	3 cut(s)	116, 132, 492
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	4 cut(s)	118, 128, 129, 183
BmiI	GGNNCC	4 cut(s)	130, 184, 581, 903
BmrFI	CCNGG	3 cut(s)	116, 132, 492
BmrI	ACTGGG	3 cut(s)	115, 509, 907
BmsI	GCATC	3 cut(s)	208, 725, 781
BmuI	ACTGGG	3 cut(s)	115, 509, 907
BpiI	GAAGAC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	11, 906, 1068
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 126, 165, 787, 851
Bse1I	ACTGG	3 cut(s)	121, 515, 902
BseBI	CCWGG	2 cut(s)	116, 492
BseDI	CCNNGG	3 cut(s)	11, 906, 1068
BseGI	GGATG	4 cut(s)	105, 184, 535, 796
BseLI	CCNNNNNNNGG	5 cut(s)	115, 126, 165, 787, 851
BseMII	CTCAG	2 cut(s)	114, 699
BseNI	ACTGG	3 cut(s)	121, 515, 902
BseSI	GKGCMC	2 cut(s)	132, 637
BseXI	GCAGC	3 cut(s)	74, 364, 955
BshFI	GGCC	5 cut(s)	119, 130, 135, 273, 760
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	5 cut(s)	115, 126, 165, 787, 851
BsmAI	GTCTC	1 cut(s)	503
BsmBI	CGTCTC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	5 cut(s)	119, 130, 135, 273, 760
Bsp120I	GGGCCC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	132, 637
Bsp143I	GATC	3 cut(s)	565, 775, 812
Bsp19I	CCATGG	2 cut(s)	11, 1068
BspACI	CCGC	2 cut(s)	399, 810
BspANI	GGCC	5 cut(s)	119, 130, 135, 273, 760
BspCNI	CTCAG	2 cut(s)	113, 698
BspLI	GGNNCC	4 cut(s)	130, 184, 581, 903
BspPI	GGATC	2 cut(s)	783, 820
BspQI	GCTCTTC	1 cut(s)	619
BsrI	ACTGG	3 cut(s)	121, 515, 902
BssECI	CCNNGG	3 cut(s)	11, 906, 1068
BssMI	GATC	3 cut(s)	565, 775, 812
BssNI	GRCGYC	1 cut(s)	496
BssT1I	CCWWGG	3 cut(s)	11, 906, 1068
Bst2UI	CCWGG	2 cut(s)	116, 492
Bst4CI	ACNGT	3 cut(s)	253, 590, 668
Bst6I	CTCTTC	3 cut(s)	63, 201, 619
BstACI	GRCGYC	1 cut(s)	496
BstDEI	CTNAG	2 cut(s)	100, 685
BstDSI	CCRYGG	2 cut(s)	11, 1068
BstEII	GGTNACC	1 cut(s)	509
BstENI	CCTNNNNNAGG	1 cut(s)	785
BstF5I	GGATG	4 cut(s)	105, 184, 535, 796
BstH2I	RGCGCY	1 cut(s)	657
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	3 cut(s)	568, 778, 815
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	3 cut(s)	565, 775, 812
BstNI	CCWGG	2 cut(s)	116, 492
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	3 cut(s)	114, 130, 490
BstSFI	CTRYAG	1 cut(s)	589
BstSLI	GKGCMC	2 cut(s)	132, 637
BstV1I	GCAGC	3 cut(s)	74, 364, 955
BstV2I	GAAGAC	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	5 cut(s)	119, 130, 135, 273, 760
BtgI	CCRYGG	2 cut(s)	11, 1068
BtsCI	GGATG	4 cut(s)	105, 184, 535, 796
BtsIMutI	CAGTG	3 cut(s)	522, 586, 970
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	656
Cfr13I	GGNCC	4 cut(s)	118, 128, 129, 183
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	7 cut(s)	12, 266, 358, 449, 861, 866, 1069
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	2 cut(s)	100, 685
DpnI	GATC	3 cut(s)	567, 777, 814
DpnII	GATC	3 cut(s)	565, 775, 812
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	63, 201, 619
EarI	CTCTTC	3 cut(s)	63, 201, 619
EciI	GGCGGA	1 cut(s)	825
Eco130I	CCWWGG	3 cut(s)	11, 906, 1068
Eco147I	AGGCCT	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	600
Eco91I	GGTNACC	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	785
EcoO65I	GGTNACC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	114, 490
EcoT14I	CCWWGG	3 cut(s)	11, 906, 1068
EcoT22I	ATGCAT	2 cut(s)	468, 718
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	3 cut(s)	11, 906, 1068
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	7 cut(s)	15, 269, 361, 452, 864, 869, 1072
FatI	CATG	7 cut(s)	11, 265, 357, 448, 860, 865, 1068
Fnu4HI	GCNGC	4 cut(s)	88, 378, 400, 969
FokI	GGATG	4 cut(s)	92, 191, 542, 803
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	88, 378, 400, 969
FspBI	CTAG	4 cut(s)	599, 630, 756, 972
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	4 cut(s)	88, 378, 400, 969
HaeII	RGCGCY	1 cut(s)	657
HaeIII	GGCC	5 cut(s)	119, 130, 135, 273, 760
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	656
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	7 cut(s)	15, 269, 361, 452, 864, 869, 1072
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HincII	GTYRAC	3 cut(s)	58, 418, 457
HindII	GTYRAC	3 cut(s)	58, 418, 457
HinfI	GANTC	6 cut(s)	71, 92, 98, 111, 419, 626
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	6 cut(s)	89, 133, 338, 383, 554, 955
Hpy166II	GTNNAC	6 cut(s)	58, 418, 457, 520, 635, 682
Hpy188I	TCNGA	5 cut(s)	97, 103, 110, 187, 721
Hpy188III	TCNNGA	2 cut(s)	209, 873
Hpy8I	GTNNAC	6 cut(s)	58, 418, 457, 520, 635, 682
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	163, 404, 1069
HpyCH4III	ACNGT	3 cut(s)	253, 590, 668
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	9 cut(s)	265, 380, 426, 441, 466, 485, 635, 716, 833
HpyF3I	CTNAG	2 cut(s)	100, 685
HpySE526I	ACGT	1 cut(s)	496
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	7 cut(s)	15, 269, 361, 452, 864, 869, 1072
HspAI	GCGC	1 cut(s)	654
Kzo9I	GATC	3 cut(s)	565, 775, 812
LguI	GCTCTTC	1 cut(s)	619
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	3 cut(s)	74, 364, 955
LweI	GCATC	3 cut(s)	208, 725, 781
MaeI	CTAG	4 cut(s)	599, 630, 756, 972
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	4 cut(s)	152, 509, 542, 893
MalI	GATC	3 cut(s)	567, 777, 814
MboI	GATC	3 cut(s)	565, 775, 812
MboII	GAAGA	6 cut(s)	80, 188, 274, 606, 710, 713
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	2 cut(s)	132, 637
MluCI	AATT	6 cut(s)	366, 486, 606, 749, 797, 804
MlyI	GAGTC	4 cut(s)	80, 92, 101, 413
MmeI	TCCRAC	3 cut(s)	120, 557, 808
MnlI	CCTC	5 cut(s)	51, 155, 365, 533, 791
Mph1103I	ATGCAT	2 cut(s)	468, 718
MseI	TTAA	1 cut(s)	1081
MslI	CAYNNNNRTG	2 cut(s)	561, 1067
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	116, 132, 492
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	2 cut(s)	116, 492
NciI	CCSGG	1 cut(s)	132
NcoI	CCATGG	2 cut(s)	11, 1068
NdeII	GATC	3 cut(s)	565, 775, 812
NlaIII	CATG	7 cut(s)	15, 269, 361, 452, 864, 869, 1072
NlaIV	GGNNCC	4 cut(s)	130, 184, 581, 903
NmuCI	GTSAC	3 cut(s)	152, 542, 893
NsiI	ATGCAT	2 cut(s)	468, 718
PceI	AGGCCT	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	619
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	2 cut(s)	111, 626
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	89, 379, 401, 970
PleI	GAGTC	4 cut(s)	79, 92, 100, 413
PpsI	GAGTC	4 cut(s)	79, 92, 100, 413
Psp6I	CCWGG	2 cut(s)	114, 490
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	114, 490
PspN4I	GGNNCC	4 cut(s)	130, 184, 581, 903
PspOMI	GGGCCC	1 cut(s)	128
PspPI	GGNCC	4 cut(s)	118, 128, 129, 183
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	2 cut(s)	561, 1067
SapI	GCTCTTC	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	1081
SatI	GCNGC	4 cut(s)	88, 378, 400, 969
Sau3AI	GATC	3 cut(s)	565, 775, 812
Sau96I	GGNCC	4 cut(s)	118, 128, 129, 183
SchI	GAGTC	4 cut(s)	80, 92, 101, 413
ScrFI	CCNGG	3 cut(s)	116, 132, 492
SduI	GDGCHC	2 cut(s)	132, 637
SfaNI	GCATC	3 cut(s)	208, 725, 781
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	561, 1067
Sse9I	AATT	6 cut(s)	366, 486, 606, 749, 797, 804
SseBI	AGGCCT	1 cut(s)	760
SsiI	CCGC	2 cut(s)	399, 810
SspMI	CTAG	4 cut(s)	599, 630, 756, 972
StuI	AGGCCT	1 cut(s)	760
StyD4I	CCNGG	3 cut(s)	114, 130, 490
StyI	CCWWGG	3 cut(s)	11, 906, 1068
TaaI	ACNGT	3 cut(s)	253, 590, 668
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	7, 147
TasI	AATT	6 cut(s)	366, 486, 606, 749, 797, 804
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	111, 626
Tru1I	TTAA	1 cut(s)	1081
Tru9I	TTAA	1 cut(s)	1081
TscAI	CASTG	3 cut(s)	522, 593, 970
TseFI	GTSAC	3 cut(s)	152, 542, 893
TseI	GCWGC	3 cut(s)	87, 377, 968
Tsp45I	GTSAC	3 cut(s)	152, 542, 893
TspDTI	ATGAA	2 cut(s)	465, 935
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	522, 593, 970
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	785
XapI	RAATTY	1 cut(s)	749
XspI	CTAG	4 cut(s)	599, 630, 756, 972
ZraI	GACGTC	1 cut(s)	497
Zsp2I	ATGCAT	2 cut(s)	468, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.