RLG00000007024

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018421
Physical Location & Seq
Reverse (-)
12765602 .. 12766372
771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007024

Sequence Viewer

Length: 687 bp
ATGGCAACAGCAGCTGCGTTGGTGATCCAAGCCAACTCATTCAAATTCCAATGGAACGAAGCCCACACAATCCGGTTGCACCCTCTTCGTCGTTCCAAAGACATTAGCTTGAATTCCAACAATCTTCGTTCTTGTTCTCCAATACGGAAGGACCTTAAACTCAAATGCTTCTTCTTAAACTCAGAGAAGAAGCCGGCGGACTACTTTACCACCACCGAGTCAAAGTCAAAATCAGGCGATTCTAAGCGGCGGCCAAGAAACCAACTCCACGTTATCGCCAATAATACGTGGGAAAGTTCTCTAAGGGCATTGAGGAAATCCGCAATGGGTGCCGTGCTGCTGGCTTTATTAGTCATGTACAACCCGAAATCGAATTCGGCATTGGCTGCCCAGATCGGGCGGGTTGGGGGAAGCTGGTCTACCTGTTCCCCCCACTACATTATTAACCATGATGATCCGTATCCGGATGAAGTTACAGCTTGTTATGTTTTCTGCTTCATTCTTGCGGCTTTTTTTGTGGTGGTTACTTCTGCTTTTGGTGATGTTTTGTGGTTGGAATTGAAATTGATCGGTTTGGCAGCGGTTCTGGCTATTTTGGCATGGAAGGATGTACGAACCAATGTAGTCAAGCTTCAGCTAGGTTTGCTTTCTTTGAATTGGGATGGTTTCGATCTGTTCCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

229

Amino Acids

25.52

Weight (kDa)

9.53

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018421)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23500
rosa_laevigata RLG00000007024
rosa_multiflora Rmu_sc0002225.1_g000013
rosa_roxburghii Rroxscaffold_5G00371730
rosa_rugosa Rorug02G0248500
rosa_samantha Rh4AG299900 Rh4BG307000 Rh4CG317300 Rh4DG298900
rosa_wichuraiana Rw4G025590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 7 cut(s) 197, 247, 250, 321, 400, 506, 581
AclWI GGATC 2 cut(s) 19, 449
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 3 cut(s) 44, 112, 373
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 2 cut(s) 359, 612
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 4 cut(s) 43, 112, 562, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 6 cut(s) 14, 108, 414, 479, 631, 637
AluI AGCT 6 cut(s) 14, 108, 414, 479, 631, 637
AlwI GGATC 2 cut(s) 19, 449
AlwNI CAGNNNCTG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 5 cut(s) 11, 14, 337, 386, 578
ApoI RAATTY 3 cut(s) 44, 112, 373
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 34, 551
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 329
BarI GAAGNNNNNNTAC 4 cut(s) 403, 435, 615, 647
BbvI GCAGC 4 cut(s) 23, 324, 373, 590
BccI CCATC 1 cut(s) 656
BceAI ACGGC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciVI GTATCC 1 cut(s) 471
BfaI CTAG 2 cut(s) 638, 685
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 8 cut(s) 12, 15, 248, 251, 338, 387, 507, 579
BlsI GCNGC 8 cut(s) 13, 16, 249, 252, 339, 388, 508, 580
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 459
BsaWI WCCGGW 2 cut(s) 72, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse118I RCCGGY 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 463
BseGI GGATG 3 cut(s) 472, 613, 667
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 4 cut(s) 23, 324, 373, 590
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 3 cut(s) 73, 194, 464
BslI CCNNNNNNNGG 1 cut(s) 396
BsnI GGCC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 463
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 5 cut(s) 24, 393, 454, 567, 670
BspACI CCGC 7 cut(s) 197, 247, 250, 321, 400, 506, 581
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 194
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 2 cut(s) 19, 449
BspT107I GGYRCC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 193
BssMI GATC 5 cut(s) 24, 393, 454, 567, 670
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 2 cut(s) 329, 386
BstAUI TGTACA 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 195, 342
BstDEI CTNAG 3 cut(s) 181, 243, 302
BstF5I GGATG 3 cut(s) 472, 613, 667
BstKTI GATC 5 cut(s) 27, 396, 457, 570, 673
BstMBI GATC 5 cut(s) 24, 393, 454, 567, 670
BstMWI GCNNNNNNNGC 6 cut(s) 11, 329, 386, 587, 596, 643
BstV1I GCAGC 4 cut(s) 23, 324, 373, 590
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 3 cut(s) 472, 613, 667
Cac8I GCNNGC 2 cut(s) 195, 342
CaiI CAGNNNCTG 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 358, 611
CviAII CATG 3 cut(s) 355, 449, 600
CviQI GTAC 2 cut(s) 358, 611
DdeI CTNAG 3 cut(s) 181, 243, 302
DpnI GATC 5 cut(s) 26, 395, 456, 569, 672
DpnII GATC 5 cut(s) 24, 393, 454, 567, 670
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 2 cut(s) 112, 373
FaeI CATG 3 cut(s) 358, 452, 603
FaiI YATR 4 cut(s) 356, 450, 486, 601
FatI CATG 3 cut(s) 354, 448, 599
FauI CCCGC 1 cut(s) 393
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 8 cut(s) 12, 15, 248, 251, 338, 387, 507, 579
FokI GGATG 3 cut(s) 479, 620, 674
Fsp4HI GCNGC 8 cut(s) 12, 15, 248, 251, 338, 387, 507, 579
FspBI CTAG 2 cut(s) 638, 685
GluI GCNGC 8 cut(s) 12, 15, 248, 251, 338, 387, 507, 579
HaeIII GGCC 1 cut(s) 253
HapII CCGG 3 cut(s) 73, 194, 464
Hin1II CATG 3 cut(s) 358, 452, 603
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 2 cut(s) 218, 239
HpaII CCGG 3 cut(s) 73, 194, 464
HphI GGTGA 2 cut(s) 34, 551
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 464, 679
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 142, 598
HpyCH4IV ACGT 2 cut(s) 270, 287
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 329, 386, 587, 596, 643
HpyF3I CTNAG 3 cut(s) 181, 243, 302
HpySE526I ACGT 2 cut(s) 270, 287
Hsp92II CATG 3 cut(s) 358, 452, 603
Kpn2I TCCGGA 1 cut(s) 463
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 5 cut(s) 24, 393, 454, 567, 670
LpnPI CCDG 9 cut(s) 86, 207, 219, 326, 400, 404, 436, 477, 572
Lsp1109I GCAGC 4 cut(s) 23, 324, 373, 590
MaeI CTAG 2 cut(s) 638, 685
MaeII ACGT 2 cut(s) 270, 287
MaeIII GTNAC 2 cut(s) 472, 523
MalI GATC 5 cut(s) 26, 395, 456, 569, 672
MboI GATC 5 cut(s) 24, 393, 454, 567, 670
MboII GAAGA 4 cut(s) 77, 116, 163, 199
MluCI AATT 6 cut(s) 44, 112, 373, 557, 563, 655
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 141, 534
MnlI CCTC 2 cut(s) 93, 306
MroI TCCGGA 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 3 cut(s) 156, 176, 444
MspA1I CMGCKG 2 cut(s) 14, 581
MspI CCGG 3 cut(s) 73, 194, 464
MwoI GCNNNNNNNGC 6 cut(s) 11, 329, 386, 587, 596, 643
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 5 cut(s) 24, 393, 454, 567, 670
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 358, 452, 603
NlaIV GGNNCC 1 cut(s) 331
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 8 cut(s) 13, 16, 249, 252, 339, 388, 508, 580
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 2 cut(s) 359, 612
RsaNI GTAC 2 cut(s) 358, 611
SaqAI TTAA 3 cut(s) 156, 176, 444
SatI GCNGC 8 cut(s) 12, 15, 248, 251, 338, 387, 507, 579
Sau3AI GATC 5 cut(s) 24, 393, 454, 567, 670
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 227
SinI GGWCC 1 cut(s) 151
Sse9I AATT 6 cut(s) 44, 112, 373, 557, 563, 655
SsiI CCGC 7 cut(s) 197, 247, 250, 321, 400, 506, 581
SspMI CTAG 2 cut(s) 638, 685
TaiI ACGT 2 cut(s) 273, 290
TaqI TCGA 2 cut(s) 371, 669
TasI AATT 6 cut(s) 44, 112, 373, 557, 563, 655
TatI WGTACW 1 cut(s) 357
TauI GCSGC 3 cut(s) 250, 253, 509
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 156, 176, 444
Tru9I TTAA 3 cut(s) 156, 176, 444
TseI GCWGC 5 cut(s) 11, 14, 337, 386, 578
TspDTI ATGAA 2 cut(s) 483, 487
TspGWI ACGGA 2 cut(s) 160, 447
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 3 cut(s) 44, 112, 373
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 2 cut(s) 638, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.