Rh4DG298900

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018421
Physical Location & Seq
Forward (+)
52103978 .. 52105700
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG298900.1

Sequence Viewer

Length: 615 bp
ATGGAATTGAAATTGATCGGTGTGGCAGCTGTTCTGGCTATTTTGGCATGGAAAGATGTACGAACCAATGTAGTCAAGCTTCAGGTTCGTTTGTCAGACACGGGGCAAGCACTCCAAACGGATCTTAATCGGATTGCTGAAAGTGTAGATGGAGACACTTCTAGCTATAGGAGTTTAAGCTATATCTTGAATGAGACAGTTATAGCTTTGTTTCGGCGTCATGGTTACTACATCTCAGGTTATTCATCAGTGGCTTCACTGGCCGGAGGTCGAGCTGCAAAGATTTACCTGAATTACCTTTCTATTAACGAGAGGATTCATCATAAAGAGACGCTTGTTAATGTAAACAACATTAAAGCCCAAAGCTTGCCGAGCCATAGTTCAGCTAATGAATCGCAGAGTGAACATATAGTGGTTACAATATTGGTGGCTGCTAAAGGTCGGGATCACATACCCGCCATCAATGACAGTGATGGCTTGGAAAAAGTGTTGCACATACTTCTTTCCATTGGTCATTCAGACCGCATAAGAGCAGTGGAAGTGTTGTGGACTCATCACTTCTCTACGAGTGCGGCAAGTATCTGTAAATTACCTGCTTCCGAGGTGCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

204

Amino Acids

22.33

Weight (kDa)

7.94

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 22 - 184 4.6e-34 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018421)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23500
rosa_laevigata RLG00000007024
rosa_multiflora Rmu_sc0002225.1_g000013
rosa_roxburghii Rroxscaffold_5G00371730
rosa_rugosa Rorug02G0248500
rosa_samantha Rh4AG299900 Rh4BG307000 Rh4CG317300 Rh4DG298900
rosa_wichuraiana Rw4G025590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccB1I GGYRCC 1 cut(s) 604
AciI CCGC 3 cut(s) 456, 523, 572
AclWI GGATC 2 cut(s) 129, 453
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 1 cut(s) 60
AgsI TTSAA 2 cut(s) 10, 190
AluBI AGCT 8 cut(s) 29, 79, 165, 180, 206, 275, 366, 386
AluI AGCT 8 cut(s) 29, 79, 165, 180, 206, 275, 366, 386
Alw26I GTCTC 3 cut(s) 147, 188, 323
AlwI GGATC 2 cut(s) 129, 453
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 3 cut(s) 26, 275, 431
BanI GGYRCC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
BbvI GCAGC 3 cut(s) 38, 262, 418
BccI CCATC 3 cut(s) 143, 467, 467
BcoDI GTCTC 3 cut(s) 147, 188, 323
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 601
BisI GCNGC 4 cut(s) 27, 276, 432, 573
BlsI GCNGC 4 cut(s) 28, 277, 433, 574
BmiI GGNNCC 1 cut(s) 606
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 600
Bse1I ACTGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 600
BseJI GATNNNNATC 1 cut(s) 126
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 3 cut(s) 38, 262, 418
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 264
BsmAI GTCTC 3 cut(s) 147, 188, 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 1 cut(s) 263
Bsp143I GATC 3 cut(s) 15, 121, 445
BspACI CCGC 3 cut(s) 456, 523, 572
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 2 cut(s) 129, 453
BspT107I GGYRCC 1 cut(s) 604
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 15, 121, 445
BssNI GRCGYC 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 199, 470
BstACI GRCGYC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 108, 368
BstDEI CTNAG 1 cut(s) 235
BstKTI GATC 3 cut(s) 18, 124, 448
BstMAI GTCTC 3 cut(s) 147, 188, 323
BstMBI GATC 3 cut(s) 15, 121, 445
BstMWI GCNNNNNNNGC 4 cut(s) 35, 44, 260, 372
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 38, 262, 418
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 4 cut(s) 255, 257, 475, 540
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 108, 368
CseI GACGC 2 cut(s) 206, 340
Csp6I GTAC 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 2 cut(s) 48, 221
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 235
DpnI GATC 3 cut(s) 17, 123, 447
DpnII GATC 3 cut(s) 15, 121, 445
EaeI YGGCCR 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 2 cut(s) 51, 224
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 2 cut(s) 47, 220
FauI CCCGC 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 27, 276, 432, 573
Fsp4HI GCNGC 4 cut(s) 27, 276, 432, 573
FspBI CTAG 1 cut(s) 162
GluI GCNGC 4 cut(s) 27, 276, 432, 573
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 264
HgaI GACGC 2 cut(s) 206, 340
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 2 cut(s) 51, 224
HindIII AAGCTT 2 cut(s) 77, 364
HinfI GANTC 3 cut(s) 316, 392, 550
HpaII CCGG 1 cut(s) 264
Hpy166II GTNNAC 3 cut(s) 346, 404, 549
Hpy188I TCNGA 4 cut(s) 97, 132, 520, 601
Hpy188III TCNNGA 2 cut(s) 187, 443
Hpy8I GTNNAC 3 cut(s) 346, 404, 549
HpyCH4III ACNGT 2 cut(s) 199, 470
HpyCH4V TGCA 2 cut(s) 278, 493
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 44, 260, 372
HpyF3I CTNAG 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 2 cut(s) 51, 224
Kzo9I GATC 3 cut(s) 15, 121, 445
LpnPI CCDG 7 cut(s) 20, 68, 222, 245, 277, 302, 606
Lsp1109I GCAGC 3 cut(s) 38, 262, 418
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 224, 415
MalI GATC 3 cut(s) 17, 123, 447
MboI GATC 3 cut(s) 15, 121, 445
MflI RGATCY 1 cut(s) 121
MluCI AATT 4 cut(s) 5, 11, 292, 587
MlyI GAGTC 1 cut(s) 544
MnlI CCTC 3 cut(s) 260, 306, 595
MseI TTAA 5 cut(s) 126, 176, 306, 339, 354
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 35, 44, 260, 372
NdeII GATC 3 cut(s) 15, 121, 445
NlaIII CATG 2 cut(s) 51, 224
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 1 cut(s) 396
PfeI GAWTC 2 cut(s) 316, 392
PkrI GCNGC 4 cut(s) 28, 277, 433, 574
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 606
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 5 cut(s) 126, 176, 306, 339, 354
SatI GCNGC 4 cut(s) 27, 276, 432, 573
Sau3AI GATC 3 cut(s) 15, 121, 445
SchI GAGTC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 5, 11, 292, 587
SsiI CCGC 3 cut(s) 456, 523, 572
SspI AATATT 1 cut(s) 423
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 199, 470
TaqI TCGA 1 cut(s) 271
TasI AATT 4 cut(s) 5, 11, 292, 587
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 2 cut(s) 316, 392
Tru1I TTAA 5 cut(s) 126, 176, 306, 339, 354
Tru9I TTAA 5 cut(s) 126, 176, 306, 339, 354
TscAI CASTG 4 cut(s) 255, 264, 475, 540
TseI GCWGC 3 cut(s) 26, 275, 431
TspDTI ATGAA 3 cut(s) 234, 308, 405
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 4 cut(s) 255, 264, 475, 540
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.