Rh4CG317300

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018421
Physical Location & Seq
Forward (+)
58008008 .. 58010283
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG317300.1

Sequence Viewer

Length: 1002 bp
ATGGCAACAGCAGCTGCGTTGGTGATCCAAGCCAACTCATTCAAATTCAAATGGAACGAAGCCCACGCAATCCGGTTGCACCCTCTTCGTCGTTCCAAAGACATTAGCTTGAATTCCAACAATCTTCGTTCTTGTTCTCCAATACGGAAGGACCTTAAACTTAAATGCTTCTTCTTAAACTCAGAGAAGAAGCCGGCGGACTACTTTACCACCACCGAGTCAAAGTCAAAATCAGGCGATTCTAAGCGGCGGCCAAGAAACCAACTCCACGTTATCGCCAATAATACGTGGGAAAGTTCTCTAAGGGCATTGAGGAAATCCGCAATGGGTGCCGTGCTGCTGGCTTTATTAGTCATGTACAACCCGAAATCGAATTCGGCATTGGCTGCCCAGATCGGGCGGGTTGGGGGAAGCTGGTCTACCTGTTCCCCCCACTACATTATTGACCATGATGATCCGTATCCGGAGGATGTTACAGCTTGTTATGTTTTCTGCTTCATTCTTGCGGGTTTTTTTGTGGTGGTTACTTCTGCTTTTGGTGATGCTTCGTGGTTGGAATTGAAATTGATCGGTGTGGCAGCTGTTCTGGCTATTTTGTCATGGAAAGATGTACGAACCAATGTAGTCAAGCTTCAGGTGGCTTCACTGGCCGGAGGTCGAGCTGCAAAGATTTACCTGAATTACCTTTCTATTAACGAGAGGATTCATCATAAAGAGACGCTTGTTAATGTAAACAACATTAAAGCCCAAAGCTTGCCGAGCCATAGTTCAGCTAATGAATCGCAGAGTGAACATATAGTGGTTACAATATTGGTGGCTGCTAAAGGTCGGGATCACATACCCGCCATCAATGACAGTGATGGCTTGGAAAAAGTGTTGCACATACTTCTTTCCATTGGTCATTCAGACCGCATAAGAGCAGTGGAAGTGTTGTGGACTCATCACTTCTCTACGAGTGCGGCAAGTATCTGTAAATTACCTGCTTCCGAGGTGCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

333

Amino Acids

36.69

Weight (kDa)

9.46

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 219 - 313 6.8e-16 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018421)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23500
rosa_laevigata RLG00000007024
rosa_multiflora Rmu_sc0002225.1_g000013
rosa_roxburghii Rroxscaffold_5G00371730
rosa_rugosa Rorug02G0248500
rosa_samantha Rh4AG299900 Rh4BG307000 Rh4CG317300 Rh4DG298900
rosa_wichuraiana Rw4G025590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 988
AccB1I GGYRCC 2 cut(s) 329, 991
AccI GTMKAC 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 9 cut(s) 197, 247, 250, 321, 400, 506, 843, 910, 959
AclWI GGATC 3 cut(s) 19, 449, 840
AcoI YGGCCR 2 cut(s) 251, 648
AcsI RAATTY 3 cut(s) 44, 112, 373
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 2 cut(s) 359, 612
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 4 cut(s) 43, 49, 112, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 9 cut(s) 14, 108, 414, 479, 581, 631, 662, 753, 773
AluI AGCT 9 cut(s) 14, 108, 414, 479, 581, 631, 662, 753, 773
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 3 cut(s) 19, 449, 840
AlwNI CAGNNNCTG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 2 cut(s) 251, 648
ApeKI GCWGC 7 cut(s) 11, 14, 337, 386, 578, 662, 818
ApoI RAATTY 3 cut(s) 44, 112, 373
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 34, 551
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 2 cut(s) 329, 991
BarI GAAGNNNNNNTAC 4 cut(s) 403, 435, 615, 647
BbvI GCAGC 6 cut(s) 23, 324, 373, 590, 649, 805
BccI CCATC 2 cut(s) 854, 854
BceAI ACGGC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciVI GTATCC 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 710
BfuAI ACCTGC 1 cut(s) 988
BfuI GTATCC 1 cut(s) 471
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 331, 993
BmsI GCATC 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 987
BsaWI WCCGGW 2 cut(s) 72, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 651
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 987
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 651
BseXI GCAGC 6 cut(s) 23, 324, 373, 590, 649, 805
BshFI GGCC 2 cut(s) 253, 650
BshNI GGYRCC 2 cut(s) 329, 991
BsiSI CCGG 4 cut(s) 73, 194, 464, 651
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 710
BsmBI CGTCTC 1 cut(s) 710
BsnI GGCC 2 cut(s) 253, 650
Bsp13I TCCGGA 1 cut(s) 463
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 5 cut(s) 24, 393, 454, 567, 832
BspACI CCGC 9 cut(s) 197, 247, 250, 321, 400, 506, 843, 910, 959
BspANI GGCC 2 cut(s) 253, 650
BspCNI CTCAG 1 cut(s) 194
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 331, 993
BspMI ACCTGC 1 cut(s) 988
BspPI GGATC 3 cut(s) 19, 449, 840
BspT107I GGYRCC 2 cut(s) 329, 991
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 1 cut(s) 651
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 987
BssMI GATC 5 cut(s) 24, 393, 454, 567, 832
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 2 cut(s) 329, 386
BstAUI TGTACA 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 195, 342, 755
BstDEI CTNAG 3 cut(s) 181, 243, 302
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 5 cut(s) 27, 396, 457, 570, 835
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 5 cut(s) 24, 393, 454, 567, 832
BstMWI GCNNNNNNNGC 6 cut(s) 11, 329, 386, 587, 647, 759
BstV1I GCAGC 6 cut(s) 23, 324, 373, 590, 649, 805
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 253, 650
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 3 cut(s) 644, 862, 927
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 3 cut(s) 195, 342, 755
CaiI CAGNNNCTG 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 727
Csp6I GTAC 2 cut(s) 358, 611
CspCI CAANNNNNGTGG 2 cut(s) 795, 830
CviAII CATG 3 cut(s) 355, 449, 600
CviQI GTAC 2 cut(s) 358, 611
DdeI CTNAG 3 cut(s) 181, 243, 302
DpnI GATC 5 cut(s) 26, 395, 456, 569, 834
DpnII GATC 5 cut(s) 24, 393, 454, 567, 832
EaeI YGGCCR 2 cut(s) 251, 648
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 2 cut(s) 112, 373
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 3 cut(s) 358, 452, 603
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FatI CATG 3 cut(s) 354, 448, 599
FauI CCCGC 3 cut(s) 393, 499, 850
FblI GTMKAC 1 cut(s) 419
FokI GGATG 1 cut(s) 482
HaeIII GGCC 2 cut(s) 253, 650
HapII CCGG 4 cut(s) 73, 194, 464, 651
HgaI GACGC 1 cut(s) 727
Hin1II CATG 3 cut(s) 358, 452, 603
HindIII AAGCTT 2 cut(s) 629, 751
HinfI GANTC 5 cut(s) 218, 239, 703, 779, 937
HpaII CCGG 4 cut(s) 73, 194, 464, 651
HphI GGTGA 2 cut(s) 34, 551
Hpy166II GTNNAC 4 cut(s) 420, 733, 791, 936
Hpy188I TCNGA 3 cut(s) 184, 907, 988
Hpy188III TCNNGA 2 cut(s) 464, 830
Hpy8I GTNNAC 4 cut(s) 420, 733, 791, 936
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 2 cut(s) 270, 287
HpyCH4V TGCA 3 cut(s) 79, 665, 880
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 329, 386, 587, 647, 759
HpyF3I CTNAG 3 cut(s) 181, 243, 302
HpySE526I ACGT 2 cut(s) 270, 287
Hsp92II CATG 3 cut(s) 358, 452, 603
Kpn2I TCCGGA 1 cut(s) 463
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 5 cut(s) 24, 393, 454, 567, 832
Lsp1109I GCAGC 6 cut(s) 23, 324, 373, 590, 649, 805
LweI GCATC 1 cut(s) 532
MaeII ACGT 2 cut(s) 270, 287
MaeIII GTNAC 3 cut(s) 472, 523, 802
MalI GATC 5 cut(s) 26, 395, 456, 569, 834
MboI GATC 5 cut(s) 24, 393, 454, 567, 832
MboII GAAGA 4 cut(s) 77, 116, 163, 199
MluCI AATT 7 cut(s) 44, 112, 373, 557, 563, 679, 974
MlyI GAGTC 2 cut(s) 227, 931
MmeI TCCRAC 2 cut(s) 141, 534
MnlI CCTC 6 cut(s) 93, 306, 460, 647, 693, 982
MroI TCCGGA 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 6 cut(s) 156, 162, 176, 693, 726, 741
MspA1I CMGCKG 2 cut(s) 14, 581
MspI CCGG 4 cut(s) 73, 194, 464, 651
MwoI GCNNNNNNNGC 6 cut(s) 11, 329, 386, 587, 647, 759
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 5 cut(s) 24, 393, 454, 567, 832
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 358, 452, 603
NlaIV GGNNCC 2 cut(s) 331, 993
NmeAIII GCCGAG 1 cut(s) 783
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 3 cut(s) 239, 703, 779
PleI GAGTC 2 cut(s) 226, 931
PpsI GAGTC 2 cut(s) 226, 931
Ppu21I YACGTR 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 331, 993
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 14
PvuII CAGCTG 2 cut(s) 14, 581
RsaI GTAC 2 cut(s) 359, 612
RsaNI GTAC 2 cut(s) 358, 611
SaqAI TTAA 6 cut(s) 156, 162, 176, 693, 726, 741
Sau3AI GATC 5 cut(s) 24, 393, 454, 567, 832
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 2 cut(s) 227, 931
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 1 cut(s) 151
Sse9I AATT 7 cut(s) 44, 112, 373, 557, 563, 679, 974
SsiI CCGC 9 cut(s) 197, 247, 250, 321, 400, 506, 843, 910, 959
SspI AATATT 1 cut(s) 810
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 2 cut(s) 273, 290
TaqI TCGA 2 cut(s) 371, 658
TasI AATT 7 cut(s) 44, 112, 373, 557, 563, 679, 974
TatI WGTACW 1 cut(s) 357
TauI GCSGC 3 cut(s) 250, 253, 962
TfiI GAWTC 3 cut(s) 239, 703, 779
Tru1I TTAA 6 cut(s) 156, 162, 176, 693, 726, 741
Tru9I TTAA 6 cut(s) 156, 162, 176, 693, 726, 741
TscAI CASTG 3 cut(s) 651, 862, 927
TseI GCWGC 7 cut(s) 11, 14, 337, 386, 578, 662, 818
TspDTI ATGAA 3 cut(s) 487, 695, 792
TspGWI ACGGA 2 cut(s) 160, 447
TspRI CASTG 3 cut(s) 651, 862, 927
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 3 cut(s) 44, 112, 373
XmiI GTMKAC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.