RLG00000007527

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015599
Physical Location & Seq
Forward (+)
17853142 .. 17854692
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007527

Sequence Viewer

Length: 936 bp
ATGGTTCCAGAATTAGAGAAACCTCGGATTACCGAGATACATGTTCGGATGGATTGTAATGGATGTGTACAGAAGATTAAGAAAGCACTACATGGCATCAACGGTATATATGATCTCTACATTGACTTCCCTCAGCAAAAGTTAACAATAATAGGGTGGGCGGATCCAGAGAAGATAGTAAAAGCCATTAAAAAGACAAGGAAGATTGCCACCATATGTTCCCATATAGAACAACCAACGGAGCCTGCTTCTCCTCCAGCAGAACAACCCCCCGAAGGTGCCGCAGCACCACCTCCCGATGGAGCAAACCATCCTCCAACGGAATCACCTCCACCAGCCGAACCAGCTCCACCTCCTGAAGCTGCCCCACCAGCCGAGCCACCAAAGGATCCGCCACCACCGGAACATCCACAACCAGAGGCACTACCAACACCTGTGGCTGCAGAGACCAATCTAGGCCAACAACATCCGGTGTACCACCACACGCCAAGAGAAGTTGCGGAAGTTCATACCATATACCACCACCCACCTGATTATGGCTACAGATACGGCTACCCTAATGGCTACCCCGGGTACTATAACAGATACCATAATAGTCAAGGACCTCCACTAGAACCAACTCCTCCCCCTGCCCCGGCTCCAGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCAGGTTCCAGTCCATACACCACCGGTCTATGTGACACATAGCTACAACACATACAGGCCATCACCTTATGTCACTGAATATGAGTATGTTCAGCCACCCCCACCACAACAGACGCATTACAGTAGGATCAGCCAATACCACCACTACAATGAGGATCAGCCGTATCACAATATCAGCAATGGAAATGGAAATGGCAACATCACGTCAATTTTTAGCGACGAAAATCCGAATGCCTGTGCTGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

312

Amino Acids

34.11

Weight (kDa)

5.79

Isoelectric Point (pI)

70.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 15 - 66 2e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015599)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18950
malus_domestica MD13G1161800.v1.1 MD16G1161600.v1.1
prunus_persica Prupe.1G129100_v2.0.a1
pyrus_communis pycom16g13700
rosa_chinensis RchiOBHm_Chr4g0423841
rosa_laevigata RLG00000007527
rosa_multiflora Rmu_sc0003369.1_g000009 Rmu_sc0008198.1_g000001
rosa_roxburghii Rroxscaffold_5G00365960
rosa_rugosa Rorug04G0191200 Rorug04G0191200
rosa_samantha Rh4AG250600 Rh4BG255900 Rh4DG250400
rosa_wichuraiana Rw4G021470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 4 cut(s) 161, 282, 392, 500
AclWI GGATC 6 cut(s) 158, 171, 383, 396, 821, 849
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 3 cut(s) 69, 476, 575
AfiI CCNNNNNNNGG 4 cut(s) 275, 299, 536, 634
AflIII ACRYGT 1 cut(s) 40
AgeI ACCGGT 1 cut(s) 709
AjiI CACGTC 1 cut(s) 891
AluBI AGCT 4 cut(s) 347, 362, 644, 729
AluI AGCT 4 cut(s) 347, 362, 644, 729
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 6 cut(s) 158, 171, 383, 396, 821, 849
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 2 cut(s) 457, 743
ApeKI GCWGC 3 cut(s) 284, 362, 440
AsiGI ACCGGT 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 3 cut(s) 570, 571, 635
AsuHPI GGTGA 2 cut(s) 318, 741
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 602
BamHI GGATCC 2 cut(s) 163, 388
BanI GGYRCC 1 cut(s) 278
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 296, 349, 427
BccI CCATC 4 cut(s) 43, 293, 318, 754
BceAI ACGGC 2 cut(s) 565, 832
BcnI CCSGG 3 cut(s) 570, 571, 635
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 2 cut(s) 455, 611
BfmI CTRYAG 2 cut(s) 441, 541
BisI GCNGC 4 cut(s) 282, 285, 363, 441
BlsI GCNGC 4 cut(s) 283, 286, 364, 442
Bme1390I CCNGG 3 cut(s) 570, 571, 635
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 569
BmgBI CACGTC 1 cut(s) 891
BmgT120I GGNCC 1 cut(s) 602
BmrFI CCNGG 3 cut(s) 570, 571, 635
BmsI GCATC 1 cut(s) 105
BpmI CTGGAG 2 cut(s) 240, 624
Bpu10I CCTNAGC 2 cut(s) 132, 687
BpuMI CCSGG 3 cut(s) 570, 571, 635
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 4 cut(s) 23, 568, 569, 633
BsaWI WCCGGW 3 cut(s) 400, 469, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 299, 536, 634
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 871
BseDI CCNNGG 4 cut(s) 23, 568, 569, 633
BseGI GGATG 5 cut(s) 54, 68, 310, 406, 466
BseLI CCNNNNNNNGG 4 cut(s) 275, 299, 536, 634
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 2 cut(s) 146, 701
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 2 cut(s) 243, 612
BseXI GCAGC 3 cut(s) 296, 349, 427
BshFI GGCC 2 cut(s) 459, 745
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 569
BslI CCNNNNNNNGG 4 cut(s) 275, 299, 536, 634
BsmAI GTCTC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 2 cut(s) 459, 745
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 569
Bsp1407I TGTACA 1 cut(s) 67
Bsp143I GATC 5 cut(s) 112, 163, 388, 813, 841
BspACI CCGC 4 cut(s) 161, 282, 392, 500
BspANI GGCC 2 cut(s) 459, 745
BspCNI CTCAG 2 cut(s) 145, 700
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 6 cut(s) 158, 171, 383, 396, 821, 849
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 709
BsrGI TGTACA 1 cut(s) 67
BsrI ACTGG 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 4 cut(s) 23, 568, 569, 633
BssMI GATC 5 cut(s) 112, 163, 388, 813, 841
Bst4CI ACNGT 2 cut(s) 104, 809
BstAUI TGTACA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 132, 687
BstF5I GGATG 5 cut(s) 54, 68, 310, 406, 466
BstKTI GATC 5 cut(s) 115, 166, 391, 816, 844
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 5 cut(s) 112, 163, 388, 813, 841
BstMWI GCNNNNNNNGC 2 cut(s) 344, 371
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 3 cut(s) 568, 569, 633
BstSFI CTRYAG 2 cut(s) 441, 541
BstV1I GCAGC 3 cut(s) 296, 349, 427
BstX2I RGATCY 2 cut(s) 163, 388
BstYI RGATCY 2 cut(s) 163, 388
BsuRI GGCC 2 cut(s) 459, 745
BtrI CACGTC 1 cut(s) 891
BtsCI GGATG 5 cut(s) 54, 68, 310, 406, 466
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 602
Cfr9I CCCGGG 1 cut(s) 569
CseI GACGC 1 cut(s) 808
Csp6I GTAC 3 cut(s) 68, 475, 574
CspAI ACCGGT 1 cut(s) 709
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 2 cut(s) 41, 92
CviQI GTAC 3 cut(s) 68, 475, 574
DdeI CTNAG 2 cut(s) 132, 687
DpnI GATC 5 cut(s) 114, 165, 390, 815, 843
DpnII GATC 5 cut(s) 112, 163, 388, 813, 841
EciI GGCGGA 2 cut(s) 176, 381
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 602
FaeI CATG 2 cut(s) 44, 95
FatI CATG 2 cut(s) 40, 91
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 4 cut(s) 282, 285, 363, 441
FokI GGATG 5 cut(s) 61, 75, 297, 393, 453
Fsp4HI GCNGC 4 cut(s) 282, 285, 363, 441
FspBI CTAG 2 cut(s) 455, 611
GluI GCNGC 4 cut(s) 282, 285, 363, 441
GsuI CTGGAG 2 cut(s) 240, 624
HaeIII GGCC 2 cut(s) 459, 745
HgaI GACGC 1 cut(s) 808
Hin1II CATG 2 cut(s) 44, 95
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 323
HpaI GTTAAC 1 cut(s) 144
HphI GGTGA 2 cut(s) 318, 741
Hpy166II GTNNAC 3 cut(s) 68, 144, 475
Hpy188I TCNGA 3 cut(s) 27, 48, 915
Hpy188III TCNNGA 4 cut(s) 8, 167, 296, 356
Hpy8I GTNNAC 3 cut(s) 68, 144, 475
Hpy99I CGWCG 1 cut(s) 908
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 104, 809
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 371
HpyF3I CTNAG 2 cut(s) 132, 687
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 2 cut(s) 44, 95
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 5 cut(s) 112, 163, 388, 813, 841
Lsp1109I GCAGC 3 cut(s) 296, 349, 427
LweI GCATC 1 cut(s) 105
MaeI CTAG 2 cut(s) 455, 611
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 2 cut(s) 718, 757
MalI GATC 5 cut(s) 114, 165, 390, 815, 843
MboI GATC 5 cut(s) 112, 163, 388, 813, 841
MboII GAAGA 3 cut(s) 85, 184, 214
MflI RGATCY 2 cut(s) 163, 388
MluCI AATT 2 cut(s) 11, 894
MmeI TCCRAC 1 cut(s) 341
MseI TTAA 3 cut(s) 78, 143, 189
MslI CAYNNNNRTG 1 cut(s) 834
MspR9I CCNGG 3 cut(s) 570, 571, 635
Mva1269I GAATGC 1 cut(s) 922
MwoI GCNNNNNNNGC 2 cut(s) 344, 371
NciI CCSGG 3 cut(s) 570, 571, 635
NdeI CATATG 1 cut(s) 215
NdeII GATC 5 cut(s) 112, 163, 388, 813, 841
NlaIII CATG 2 cut(s) 44, 95
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 718, 757
NspI RCATGY 1 cut(s) 44
PciI ACATGT 1 cut(s) 40
PctI GAATGC 1 cut(s) 922
PfeI GAWTC 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 709
PkrI GCNGC 4 cut(s) 283, 286, 364, 442
PpuMI RGGWCCY 1 cut(s) 602
PscI ACATGT 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 602
PspPI GGNCC 1 cut(s) 602
PspPPI RGGWCCY 1 cut(s) 602
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 2 cut(s) 163, 388
RsaI GTAC 3 cut(s) 69, 476, 575
RsaNI GTAC 3 cut(s) 68, 475, 574
RseI CAYNNNNRTG 1 cut(s) 834
SaqAI TTAA 3 cut(s) 78, 143, 189
SatI GCNGC 4 cut(s) 282, 285, 363, 441
Sau3AI GATC 5 cut(s) 112, 163, 388, 813, 841
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 570, 571, 635
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 2 cut(s) 441, 541
SinI GGWCC 1 cut(s) 602
SmaI CCCGGG 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 834
Sse9I AATT 2 cut(s) 11, 894
SsiI CCGC 4 cut(s) 161, 282, 392, 500
SspMI CTAG 2 cut(s) 455, 611
StyD4I CCNGG 3 cut(s) 568, 569, 633
TaaI ACNGT 2 cut(s) 104, 809
TaiI ACGT 1 cut(s) 893
TasI AATT 2 cut(s) 11, 894
TatI WGTACW 1 cut(s) 67
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 78, 143, 189
Tru9I TTAA 3 cut(s) 78, 143, 189
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 2 cut(s) 718, 757
TseI GCWGC 3 cut(s) 284, 362, 440
Tsp45I GTSAC 2 cut(s) 718, 757
TspDTI ATGAA 1 cut(s) 497
TspGWI ACGGA 2 cut(s) 254, 335
TspMI CCCGGG 1 cut(s) 569
TspRI CASTG 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 602
XceI RCATGY 1 cut(s) 44
XmaI CCCGGG 1 cut(s) 569
XspI CTAG 2 cut(s) 455, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.