Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006682

Physical Location & Seq

Genomic Coordinates Forward (+)

33396039 .. 33401968

Gene Structure 5930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCATTCAACGTGACCCCAAAGCATAAGAACGTCAAGCTTGCACTTCACGTATCAATATCATTCACCAAGAATGGGTCCTCCTCTCAAATCCAGCAACAGAGACCTTCCACAGCAAACTGCTCTATAGAGTCTGTCGAATCCTCGATACGAAGTCTGTTAAGGAGCTGGTACAGACGGCAGAAATGGCAAGTTTTATTCAACTCCACACCACCACAAGAACTTGATAGAACTCCATGGAGAACCCATCTGGCCAGTTTCCTTGAATCCACACCAGTTCATGCAGTTTCTCTCGGTCTCCTCATTATCGATCTCATCTTCACCATCCTTGAACTCTCCTCATCTTTACTTGCTACCAGTTGCAGGCCAAACGAGAACCACAAAGCTACAGAAGAAATCTGGTACCACTGGGTTGGCGTTGCTATTCTTACTCTGCTTTCAGCAAAGACTATTGCCCTTGCTGTGGGGCTCGGCACCACATTCTTTAGGCGTCCGGGTTATGTCATTGATGGGATCGTTTTGATGGGCGCGTTGGGGTTAGAAGTGTTTTTAGACAAGATAGGGGGTGGGTTGCTTGTTGTGGTCAGTTTGTGGCGAGTTGTTAGGGTAGTAGAAAGTGCATTTGAGCTGAGTGATGAGGCCATTGAAGCACAGATTGAAGGGCTTGTGTGCCAGTTTGAGATGTTGAGGGAAGAGAATAGGAGACTGTTAGAAATCATTGCTGAGAAAGATCAGATTATCCAGAAGCTCCAGGAAGATTCAGATCAATGTACATGTTGCTCCAGTCGAAAATCTTTACCTTATGAACGATATTGTAAAGGCCTTAATGTATCTTTTGGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

281

Amino Acids

31.58

Weight (kDa)

7.0

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11240
fragaria_vesca	FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810
malus_domestica	MD13G1161900.v1.1 MD16G1161700.v1.1
prunus_persica	Prupe.1G129200_v2.0.a1
pyrus_communis	pycom13g13800
rosa_chinensis	RchiOBHm_Chr4g0423831
rosa_laevigata	RLG00000007528
rosa_multiflora	Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365950
rosa_rugosa	Rorug04G0191100 Rorug04G0191200 Rorug04G0191200
rosa_samantha	Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300
rosa_wichuraiana	Rw4G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	2 cut(s)	402, 473
AccII	CGCG	1 cut(s)	530
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	2 cut(s)	252, 838
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	3 cut(s)	173, 404, 772
AfiI	CCNNNNNNNGG	3 cut(s)	75, 363, 463
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	6 cut(s)	10, 202, 266, 332, 647, 659
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	5 cut(s)	40, 168, 386, 628, 748
AluI	AGCT	5 cut(s)	40, 168, 386, 628, 748
Alw26I	GTCTC	3 cut(s)	97, 302, 697
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	5 cut(s)	252, 365, 639, 820, 838
Asp718I	GGTACC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	58, 313
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	2 cut(s)	254, 840
BanI	GGYRCC	2 cut(s)	402, 473
BanII	GRGCYC	1 cut(s)	471
BccI	CCATC	4 cut(s)	255, 332, 503, 517
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	752
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	3 cut(s)	97, 302, 697
BfmI	CTRYAG	2 cut(s)	126, 387
Bme1390I	CCNGG	2 cut(s)	495, 752
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	79, 404, 475
BmrFI	CCNGG	2 cut(s)	495, 752
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpmI	CTGGAG	2 cut(s)	734, 766
BpuMI	CCSGG	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	762
BsaHI	GRCGYC	1 cut(s)	490
BsaI	GGTCTC	2 cut(s)	97, 302
BsaJI	CCNNGG	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 363, 463
Bse1I	ACTGG	6 cut(s)	255, 275, 357, 413, 673, 783
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	1 cut(s)	752
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	324
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	3 cut(s)	75, 363, 463
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	620, 714
BseNI	ACTGG	6 cut(s)	255, 275, 357, 413, 673, 783
BseRI	GAGGAG	3 cut(s)	73, 290, 328
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	5 cut(s)	254, 367, 641, 822, 840
BshNI	GGYRCC	2 cut(s)	402, 473
BshVI	ATCGAT	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	3 cut(s)	75, 363, 463
BsmAI	GTCTC	3 cut(s)	97, 302, 697
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	254, 367, 641, 822, 840
Bso31I	GGTCTC	2 cut(s)	97, 302
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp1407I	TGTACA	1 cut(s)	770
Bsp143I	GATC	4 cut(s)	310, 513, 730, 763
Bsp19I	CCATGG	1 cut(s)	236
BspANI	GGCC	5 cut(s)	254, 367, 641, 822, 840
BspCNI	CTCAG	2 cut(s)	621, 715
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	79, 404, 475
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	2 cut(s)	402, 473
BspTNI	GGTCTC	2 cut(s)	97, 302
BsrDI	GCAATG	1 cut(s)	717
BsrGI	TGTACA	1 cut(s)	770
BsrI	ACTGG	6 cut(s)	255, 275, 357, 413, 673, 783
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	4 cut(s)	310, 513, 730, 763
BssNI	GRCGYC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	42, 365
BstDEI	CTNAG	2 cut(s)	629, 723
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	4 cut(s)	313, 516, 733, 766
BstMAI	GTCTC	3 cut(s)	97, 302, 697
BstMBI	GATC	4 cut(s)	310, 513, 730, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 647
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	777
BstSCI	CCNGG	2 cut(s)	493, 750
BstSFI	CTRYAG	2 cut(s)	126, 387
BstUI	CGCG	1 cut(s)	530
BstXI	CCANNNNNNTGG	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	254, 367, 641, 822, 840
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	42, 365
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	3 cut(s)	172, 403, 771
CviAII	CATG	3 cut(s)	237, 281, 774
CviQI	GTAC	3 cut(s)	172, 403, 771
DdeI	CTNAG	2 cut(s)	629, 723
DpnI	GATC	4 cut(s)	312, 515, 732, 765
DpnII	GATC	4 cut(s)	310, 513, 730, 763
EaeI	YGGCCR	2 cut(s)	252, 838
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	2 cut(s)	97, 302
Eco47I	GGWCC	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	3 cut(s)	240, 284, 777
FaiI	YATR	7 cut(s)	27, 128, 238, 282, 501, 775, 804
FatI	CATG	3 cut(s)	236, 280, 773
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	471
GlaI	GCGC	1 cut(s)	529
GsuI	CTGGAG	2 cut(s)	734, 766
HaeIII	GGCC	5 cut(s)	254, 367, 641, 822, 840
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	240, 284, 777
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	131, 140, 266, 758
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	58, 313
Hpy188I	TCNGA	2 cut(s)	735, 763
Hpy188III	TCNNGA	1 cut(s)	742
HpyAV	CCTTC	2 cut(s)	117, 653
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	3 cut(s)	12, 33, 51
HpyCH4V	TGCA	4 cut(s)	44, 284, 363, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 647
HpyF3I	CTNAG	2 cut(s)	629, 723
HpySE526I	ACGT	3 cut(s)	12, 33, 51
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	240, 284, 777
HspAI	GCGC	1 cut(s)	528
KpnI	GGTACC	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	310, 513, 730, 763
LmnI	GCTCC	3 cut(s)	165, 753, 785
MaeII	ACGT	3 cut(s)	12, 33, 51
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	4 cut(s)	312, 515, 732, 765
MboI	GATC	4 cut(s)	310, 513, 730, 763
MboII	GAAGA	4 cut(s)	310, 404, 704, 767
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	2 cut(s)	254, 840
MluNI	TGGCCA	2 cut(s)	254, 840
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	91, 94, 154, 311, 349, 631, 681
Mox20I	TGGCCA	2 cut(s)	254, 840
MscI	TGGCCA	2 cut(s)	254, 840
MseI	TTAA	2 cut(s)	161, 825
Msp20I	TGGCCA	2 cut(s)	254, 840
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	495, 752
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	187, 647
NciI	CCSGG	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	310, 513, 730, 763
NlaIII	CATG	3 cut(s)	240, 284, 777
NlaIV	GGNNCC	3 cut(s)	79, 404, 475
NmeAIII	GCCGAG	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	777
PceI	AGGCCT	1 cut(s)	822
PciI	ACATGT	1 cut(s)	773
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	140, 266, 758
PfoI	TCCNGGA	1 cut(s)	750
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	78
PscI	ACATGT	1 cut(s)	773
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	3 cut(s)	79, 404, 475
PspPI	GGNCC	1 cut(s)	78
PspPPI	RGGWCCY	1 cut(s)	78
RsaI	GTAC	3 cut(s)	173, 404, 772
RsaNI	GTAC	3 cut(s)	172, 403, 771
SaqAI	TTAA	2 cut(s)	161, 825
Sau3AI	GATC	4 cut(s)	310, 513, 730, 763
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	495, 752
SduI	GDGCHC	1 cut(s)	471
SfcI	CTRYAG	2 cut(s)	126, 387
SinI	GGWCC	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	822
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	493, 750
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	3 cut(s)	15, 36, 54
TaqI	TCGA	4 cut(s)	138, 146, 309, 787
TaqII	GACCGA	1 cut(s)	284
TatI	WGTACW	1 cut(s)	770
TfiI	GAWTC	3 cut(s)	140, 266, 758
Tru1I	TTAA	2 cut(s)	161, 825
Tru9I	TTAA	2 cut(s)	161, 825
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	269, 819
TspRI	CASTG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.