Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006682

Physical Location & Seq

Genomic Coordinates Forward (+)

46352700 .. 46358735

Gene Structure 6036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGCCCCGTCAAACATCAGAGACCTCTTGACGGCGTTTAATCCGTCGCTGGACTTGTTCGCCATTACTTCCGGCGACGGTCGAATCAAGATTTGGGACACTGTGAAGGGTCAAGTCCAGACTGAGTTTACAGACATAGTATCAGAGGAAGATACAAGCATATTTGCCAAAAGAGAAAGAGGGCATCTCTCTGTTGATTACACTTGCATGAAATGGTTCACTTCTGAAAGAAAGAAGAAAAGGAAGCTTGGGTGCTCGTTGTTGGTTTTGGGAACTGGTGGTGGTGATGTATTGTCTCTTGATGTGGCTGCTGGTCAATCGAAATGGAGAGTTACCGATTGCCATGCAGGTCGTGTTAGTGCAATATCGTTTGCAAGAAGTGGTTCTTCTATTTACACTGCCGGTGCTGATGGGATGATTTGCGAAATCGATTCACTTACAGGAAACCTGTTGGGGAAGTTCAAAGCTTCGACAAAGACAATCTCCTCTATGTCTGTTTCAGCAGATGGGAAGATAATAGCTACTGCAGCTGCACAAATGAAGATATTGAATTTGTCTGACCACAAAAAGATACAGAAGTTTTCCGGCCATCCTGGAGCTGTTCGCTGTATGATCTTCACTGAGAATGGGAAGTACATTCTCTCATCTGCAGTTGGTGAAAGGTATATTGCAGTATGGAATATAGATGGTGGGAAAAAGCAGTCAGCAAGTGCTGTTCTCGCAATGGAGCACCCTGCTGTGTTCCTTGATAGCAGGTGCATAGACGGTGGGGAAGTTGGTGATGCAGGTCTATATGTCTTAGCAATCTCAGAAGTTGGCGTTTGTTATTTTTGGTTTGGAAAGAATGCTGAAGAATTACGGAATGCCAAGCCTACAAAAATTTCAGTATCTTCTGAAGACAGTTTGTCTGAAACTCATAGGGGTTCACCTGCAATATTTGCTGCAATTTTCCAAGGAATTGCCAAATCAGCTTCTGGGCAGATATTTGTTGCTTCTGGATTACCAGTGAAGCCATCATTTCAAAAACTTTTGGTGCATTCTGGTACTGACATAAAGTTGAGTAGCTCCCGTGATGGGGTTCTTCTACCAATTAGTCAGTCTCTTGTCAAATCCAAGAGAGGCCAAGATGTACAAAATAGAGTTGTTGCATTAGATCGTGCAAATGCAGAAGATGCCCTACTTCCGATTCCAAAGATCTTTGATTCGCATGAAAAAAAGAAAAAGCATGAAAAATTGCGCTTTGACAAAGACGAAGTAATGGCCGATTTGGAGGACAGCAGGAGTCTCTCTGGCCCTGTGAAGACCAAAGATGGCACGGTAGAATTTGAACTTGACACTGGAGCAATTTGCATGGAGGACCGGTTGAGATCATTAGGAATACTCAGTAAACTAGATGACCAAACAATCAAATCCACACTAAATTCTGCAGCATTTAAGAGTATTGACATTCAGACAAATATGCCACAAAAGAAGATGAGGGCAGCTGTACTGTCAATGGTACCTAGTGACACATACAAGTTATTGGGAGTTTTGGTGGCCATTTGGCAAACAAGGTTTGTTCTTGCTGTCATGATCTTGCTTAGGTTTTTCATCATATGCATGCATGCATGCATGTGGATATGTGTATATGTATATACATATATATATATATATATATATATATTTTTTTTTTTCCTTTTCTTTTTTACTTTTGAGGATGTGGCTATGTGTGCATCTGTGTGCGTGTTTTATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

578

Amino Acids

63.57

Weight (kDa)

8.77

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	68 - 234	1.9e-12	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	86 - 182	3e-08	THOC3 beta-propeller domain
WDR55	PF24796	87 - 238	6.9e-11	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	89 - 231	5.2e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	96 - 231	6.8e-11	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	106 - 228	4.3e-15	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	114 - 232	6.7e-14	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	117 - 238	3.2e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	121 - 239	7.1e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	126 - 236	8.7e-08	MABP1/WDR62 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11240
fragaria_vesca	FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810
malus_domestica	MD13G1161900.v1.1 MD16G1161700.v1.1
prunus_persica	Prupe.1G129200_v2.0.a1
pyrus_communis	pycom13g13800
rosa_chinensis	RchiOBHm_Chr4g0423831
rosa_laevigata	RLG00000007528
rosa_multiflora	Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365950
rosa_rugosa	Rorug04G0191100 Rorug04G0191200 Rorug04G0191200
rosa_samantha	Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300
rosa_wichuraiana	Rw4G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	744, 937
Acc36I	ACCTGC	4 cut(s)	338, 744, 776, 937
Acc65I	GGTACC	1 cut(s)	1498
AccB1I	GGYRCC	1 cut(s)	1498
AcoI	YGGCCR	3 cut(s)	586, 1260, 1536
AcsI	RAATTY	4 cut(s)	550, 879, 1322, 1420
AcuI	CTGAAG	2 cut(s)	870, 915
AfaI	GTAC	5 cut(s)	635, 1045, 1131, 1488, 1500
AfiI	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
AgeI	ACCGGT	1 cut(s)	1359
AgsI	TTSAA	4 cut(s)	463, 550, 1022, 1328
AhdI	GACNNNNNGTC	1 cut(s)	904
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	8 cut(s)	247, 467, 521, 530, 599, 971, 1065, 1484
AluI	AGCT	8 cut(s)	247, 467, 521, 530, 599, 971, 1065, 1484
Alw21I	GWGCWC	2 cut(s)	257, 732
Alw26I	GTCTC	4 cut(s)	15, 300, 1104, 1289
AlwNI	CAGNNNCTG	1 cut(s)	974
AoxI	GGCC	6 cut(s)	3, 586, 1120, 1260, 1291, 1536
ApeKI	GCWGC	6 cut(s)	308, 527, 530, 941, 1427, 1481
ApoI	RAATTY	4 cut(s)	550, 879, 1322, 1420
AsiGI	ACCGGT	1 cut(s)	1359
Asp700I	GAANNNNTTC	2 cut(s)	215, 382
Asp718I	GGTACC	1 cut(s)	1498
AspLEI	GCGC	1 cut(s)	1239
AspS9I	GGNCC	3 cut(s)	4, 1292, 1357
AsuHPI	GGTGA	4 cut(s)	296, 668, 791, 918
AvaII	GGWCC	1 cut(s)	1357
BaeI	ACNNNNGTAYC	2 cut(s)	563, 596
BalI	TGGCCA	1 cut(s)	1538
BanI	GGYRCC	1 cut(s)	1498
BarI	GAAGNNNNNNTAC	2 cut(s)	1161, 1193
BbsI	GAAGAC	2 cut(s)	903, 1307
Bbv12I	GWGCWC	2 cut(s)	257, 732
BbvI	GCAGC	6 cut(s)	295, 517, 539, 928, 1439, 1493
BccI	CCATC	7 cut(s)	404, 500, 597, 680, 1021, 1067, 1304
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	4 cut(s)	15, 300, 1104, 1289
BfaI	CTAG	2 cut(s)	1391, 1503
BfmI	CTRYAG	3 cut(s)	525, 648, 1425
BfuAI	ACCTGC	4 cut(s)	338, 744, 776, 937
BglII	AGATCT	1 cut(s)	1194
BisI	GCNGC	6 cut(s)	309, 528, 531, 942, 1428, 1482
BlsI	GCNGC	6 cut(s)	310, 529, 532, 943, 1429, 1483
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	1357
BmeRI	GACNNNNNGTC	1 cut(s)	904
BmgT120I	GGNCC	3 cut(s)	4, 1292, 1357
BmiI	GGNNCC	2 cut(s)	6, 1500
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	4 cut(s)	193, 772, 1162, 1721
BpiI	GAAGAC	2 cut(s)	903, 1307
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	2 cut(s)	615, 1359
Bpu10I	CCTNAGC	1 cut(s)	1580
Bsa29I	ATCGAT	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	952
BsaWI	WCCGGW	1 cut(s)	1359
BsaXI	ACNNNNNCTCC	4 cut(s)	1346, 1376, 1518, 1548
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
Bse118I	RCCGGY	2 cut(s)	401, 1359
Bse1I	ACTGG	3 cut(s)	280, 1004, 1342
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	594
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	3 cut(s)	420, 589, 1702
BseLI	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	4 cut(s)	114, 612, 822, 1396
BseNI	ACTGG	3 cut(s)	280, 1004, 1342
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	6 cut(s)	295, 517, 539, 928, 1439, 1493
BsgI	GTGCAG	1 cut(s)	516
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	6 cut(s)	5, 588, 1122, 1262, 1293, 1538
BshNI	GGYRCC	1 cut(s)	1498
BshTI	ACCGGT	1 cut(s)	1359
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	257, 732
BsiSI	CCGG	4 cut(s)	72, 402, 585, 1360
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
BsmAI	GTCTC	4 cut(s)	15, 300, 1104, 1289
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	3 cut(s)	850, 868, 1036
BsnI	GGCC	6 cut(s)	5, 588, 1122, 1262, 1293, 1538
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	257, 732
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
BspANI	GGCC	6 cut(s)	5, 588, 1122, 1262, 1293, 1538
BspCNI	CTCAG	4 cut(s)	115, 613, 821, 1395
BspDI	ATCGAT	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	1569
BspLI	GGNNCC	2 cut(s)	6, 1500
BspMAI	CTGCAG	3 cut(s)	529, 652, 1429
BspMI	ACCTGC	4 cut(s)	338, 744, 776, 937
BspT107I	GGYRCC	1 cut(s)	1498
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	401, 1359
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	3 cut(s)	280, 1004, 1342
BssAI	RCCGGY	2 cut(s)	401, 1359
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
BssT1I	CCWWGG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	6 cut(s)	80, 103, 767, 902, 1318, 1491
BstAPI	GCANNNNNTGC	2 cut(s)	938, 1172
BstAUI	TGTACA	1 cut(s)	1129
BstC8I	GCNNGC	3 cut(s)	1601, 1605, 1609
BstDEI	CTNAG	6 cut(s)	123, 621, 799, 808, 1382, 1580
BstF5I	GGATG	3 cut(s)	420, 589, 1702
BstHHI	GCGC	1 cut(s)	1239
BstKTI	GATC	5 cut(s)	615, 1156, 1197, 1370, 1575
BstMAI	GTCTC	4 cut(s)	15, 300, 1104, 1289
BstMBI	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	6 cut(s)	527, 719, 938, 968, 1172, 1709
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	4 cut(s)	1603, 1607, 1611, 1615
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	3 cut(s)	525, 648, 1425
BstV1I	GCAGC	6 cut(s)	295, 517, 539, 928, 1439, 1493
BstV2I	GAAGAC	2 cut(s)	903, 1307
BstX2I	RGATCY	1 cut(s)	1194
BstYI	RGATCY	1 cut(s)	1194
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	6 cut(s)	5, 588, 1122, 1262, 1293, 1538
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	420, 589, 1702
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	5 cut(s)	99, 396, 618, 1011, 1335
BveI	ACCTGC	4 cut(s)	338, 744, 776, 937
Cac8I	GCNNGC	3 cut(s)	1601, 1605, 1609
CaiI	CAGNNNCTG	1 cut(s)	974
CciI	TCATGA	1 cut(s)	1569
CfoI	GCGC	1 cut(s)	1239
Cfr10I	RCCGGY	2 cut(s)	401, 1359
Cfr13I	GGNCC	3 cut(s)	4, 1292, 1357
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	5 cut(s)	634, 1044, 1130, 1487, 1499
CspAI	ACCGGT	1 cut(s)	1359
CviQI	GTAC	5 cut(s)	634, 1044, 1130, 1487, 1499
DdeI	CTNAG	6 cut(s)	123, 621, 799, 808, 1382, 1580
DpnI	GATC	5 cut(s)	614, 1155, 1196, 1369, 1574
DpnII	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
DriI	GACNNNNNGTC	1 cut(s)	904
EaeI	YGGCCR	3 cut(s)	586, 1260, 1536
Eam1105I	GACNNNNNGTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	952
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	1357
Eco57I	CTGAAG	2 cut(s)	870, 915
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	952
EcoT22I	ATGCAT	4 cut(s)	1601, 1605, 1609, 1613
ErhI	CCWWGG	1 cut(s)	952
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	110
FauNDI	CATATG	1 cut(s)	1595
Fnu4HI	GCNGC	6 cut(s)	309, 528, 531, 942, 1428, 1482
FokI	GGATG	3 cut(s)	427, 576, 1709
Fsp4HI	GCNGC	6 cut(s)	309, 528, 531, 942, 1428, 1482
FspBI	CTAG	2 cut(s)	1391, 1503
GlaI	GCGC	1 cut(s)	1238
GluI	GCNGC	6 cut(s)	309, 528, 531, 942, 1428, 1482
GsuI	CTGGAG	2 cut(s)	615, 1359
HaeIII	GGCC	6 cut(s)	5, 588, 1122, 1262, 1293, 1538
HapII	CCGG	4 cut(s)	72, 402, 585, 1360
HhaI	GCGC	1 cut(s)	1239
Hin6I	GCGC	1 cut(s)	1237
HinP1I	GCGC	1 cut(s)	1237
HindIII	AAGCTT	2 cut(s)	245, 465
HinfI	GANTC	5 cut(s)	84, 431, 1186, 1202, 1282
HpaII	CCGG	4 cut(s)	72, 402, 585, 1360
HphI	GGTGA	4 cut(s)	296, 668, 791, 918
Hpy166II	GTNNAC	4 cut(s)	129, 219, 926, 1388
Hpy188I	TCNGA	9 cut(s)	20, 145, 226, 559, 811, 895, 910, 1185, 1452
Hpy188III	TCNNGA	6 cut(s)	28, 88, 118, 299, 996, 1570
Hpy8I	GTNNAC	4 cut(s)	129, 219, 926, 1388
Hpy99I	CGWCG	2 cut(s)	49, 80
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	6 cut(s)	80, 103, 767, 902, 1318, 1491
HpyF10VI	GCNNNNNNNGC	6 cut(s)	527, 719, 938, 968, 1172, 1709
HpyF3I	CTNAG	6 cut(s)	123, 621, 799, 808, 1382, 1580
HspAI	GCGC	1 cut(s)	1237
KpnI	GGTACC	1 cut(s)	1502
Kzo9I	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
LmnI	GCTCC	4 cut(s)	596, 727, 1070, 1340
Lsp1109I	GCAGC	6 cut(s)	295, 517, 539, 928, 1439, 1493
LweI	GCATC	4 cut(s)	193, 772, 1162, 1721
MaeI	CTAG	2 cut(s)	1391, 1503
MaeIII	GTNAC	2 cut(s)	331, 1505
MalI	GATC	5 cut(s)	614, 1155, 1196, 1369, 1574
MboI	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
MflI	RGATCY	1 cut(s)	1194
MhlI	GDGCHC	2 cut(s)	257, 732
MlsI	TGGCCA	1 cut(s)	1538
MluNI	TGGCCA	1 cut(s)	1538
MlyI	GAGTC	1 cut(s)	1291
MnlI	CCTC	9 cut(s)	35, 139, 173, 496, 1112, 1264, 1348, 1470, 1687
Mox20I	TGGCCA	1 cut(s)	1538
Mph1103I	ATGCAT	4 cut(s)	1601, 1605, 1609, 1613
MroXI	GAANNNNTTC	2 cut(s)	215, 382
MscI	TGGCCA	1 cut(s)	1538
MseI	TTAA	2 cut(s)	39, 1434
MslI	CAYNNNNRTG	4 cut(s)	206, 1598, 1612, 1717
Msp20I	TGGCCA	1 cut(s)	1538
MspA1I	CMGCKG	2 cut(s)	530, 1484
MspI	CCGG	4 cut(s)	72, 402, 585, 1360
MspR9I	CCNGG	1 cut(s)	594
Mva1269I	GAATGC	3 cut(s)	850, 868, 1036
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	6 cut(s)	527, 719, 938, 968, 1172, 1709
NdeI	CATATG	1 cut(s)	1595
NdeII	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
NlaIV	GGNNCC	2 cut(s)	6, 1500
NmuCI	GTSAC	1 cut(s)	1505
NsiI	ATGCAT	4 cut(s)	1601, 1605, 1609, 1613
NspI	RCATGY	4 cut(s)	1603, 1607, 1611, 1615
PaeI	GCATGC	3 cut(s)	1603, 1607, 1611
PagI	TCATGA	1 cut(s)	1569
PaqCI	CACCTGC	2 cut(s)	744, 937
PctI	GAATGC	3 cut(s)	850, 868, 1036
PdmI	GAANNNNTTC	2 cut(s)	215, 382
PfeI	GAWTC	4 cut(s)	84, 431, 1186, 1202
PfoI	TCCNGGA	1 cut(s)	592
PinAI	ACCGGT	1 cut(s)	1359
PkrI	GCNGC	6 cut(s)	310, 529, 532, 943, 1429, 1483
PleI	GAGTC	1 cut(s)	1290
PpsI	GAGTC	1 cut(s)	1290
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	6, 1500
PspPI	GGNCC	3 cut(s)	4, 1292, 1357
PstI	CTGCAG	3 cut(s)	529, 652, 1429
PstNI	CAGNNNCTG	1 cut(s)	974
PsuI	RGATCY	1 cut(s)	1194
PvuII	CAGCTG	2 cut(s)	530, 1484
RsaI	GTAC	5 cut(s)	635, 1045, 1131, 1488, 1500
RsaNI	GTAC	5 cut(s)	634, 1044, 1130, 1487, 1499
RseI	CAYNNNNRTG	4 cut(s)	206, 1598, 1612, 1717
SaqAI	TTAA	2 cut(s)	39, 1434
SatI	GCNGC	6 cut(s)	309, 528, 531, 942, 1428, 1482
Sau3AI	GATC	5 cut(s)	612, 1153, 1194, 1367, 1572
Sau96I	GGNCC	3 cut(s)	4, 1292, 1357
SchI	GAGTC	1 cut(s)	1291
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	2 cut(s)	257, 732
SfaNI	GCATC	4 cut(s)	193, 772, 1162, 1721
SfcI	CTRYAG	3 cut(s)	525, 648, 1425
SinI	GGWCC	1 cut(s)	1357
SmiMI	CAYNNNNRTG	4 cut(s)	206, 1598, 1612, 1717
SphI	GCATGC	3 cut(s)	1603, 1607, 1611
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	2 cut(s)	1391, 1503
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	6 cut(s)	80, 103, 767, 902, 1318, 1491
TaqI	TCGA	4 cut(s)	82, 320, 429, 470
TatI	WGTACW	3 cut(s)	633, 1129, 1486
TfiI	GAWTC	4 cut(s)	84, 431, 1186, 1202
Tru1I	TTAA	2 cut(s)	39, 1434
Tru9I	TTAA	2 cut(s)	39, 1434
TscAI	CASTG	5 cut(s)	106, 403, 625, 1011, 1342
TseFI	GTSAC	1 cut(s)	1505
TseI	GCWGC	6 cut(s)	308, 527, 530, 941, 1427, 1481
Tsp45I	GTSAC	1 cut(s)	1505
TspDTI	ATGAA	5 cut(s)	224, 554, 1224, 1242, 1579
TspGWI	ACGGA	2 cut(s)	33, 874
TspRI	CASTG	5 cut(s)	106, 403, 625, 1011, 1342
VpaK11BI	GGWCC	1 cut(s)	1357
XapI	RAATTY	4 cut(s)	550, 879, 1322, 1420
XceI	RCATGY	4 cut(s)	1603, 1607, 1611, 1615
XmnI	GAANNNNTTC	2 cut(s)	215, 382
XspI	CTAG	2 cut(s)	1391, 1503
Zsp2I	ATGCAT	4 cut(s)	1601, 1605, 1609, 1613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.