Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006682

Physical Location & Seq

Genomic Coordinates Forward (+)

56255212 .. 56261286

Gene Structure 6075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG250500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGACCCCGTCAAACATCAGAGACCTCTTGACGGCGTTTAATCCGTCGCTGGACTTGTTCGCCATTACTTCCGGCGACGGTCGAATCAAGATTTGGGACACTGTGAAGGGTCAAGTCCAGACTGAGTTTACAGACATAGTATCAGAGGAAGATACAAGCATATTTGCCAAAAGAGAAAGAGGGCATCTCTCAGTTGATTACACTTGCATGAAATGGTTCACTTCTGAAAGAAAGAAGAAAAGGAAGCTTGGTTGCTCATTGTTGGTTTTGGGAACTGGTGGTGGTGATGTATTGGCTCTTGACGTGGCTGCTGGTCAATCGAAATGGAGAGTTACCGATTGCCATGCAGGTCGTGTTAGTGCAATATCGTTTGCAAGAAGTGGTTCTTCTATTTACACTGCCGGTGCTGATGGGATGATTTGCGAAATCGATTCACTTACAGGAAACCTGTTGGGGAAGTTCAAAGCTTCGACAAAGGCAATCTCCTCTATGTCTGTTTCAGCAGATGGGAAGATACTAGCTACAGCAGCTGCACAAATGAAGATATTGAATTTGTCTGACCACAAAAAGATACAGAAGTTTTCCGGCCATCCTGGAGCTGTTCGCTGTATGATCTTCACTGAGAATGGGAAGTACATTCTCTCATCTGCAGTTGGTGAAAGGTATATTGCAGTATGGAATATAGATGGTGGGAAAAAGCAGTCAGCAAGTGCTGTTCTCGCAATGGAGCACCCTGCTGTGTTCCTTGATAGCAGGTGCATAGACAGTGGGGAAGTTGGTGATGCAGGTCTATATGTCTTAGCAATCTCAGAAGTTGGCGTTTGTTATTTTTGGTTTGGAAAGAATGCTGAAGAATTACGGAATGCCAAGCCTACAAAAATTTCAGTATCTTCTGAAGACAGTTTGTCTGAAACTCATAGGGGTTCACCTGCAATATTTGCTGCAATTTTACAAGGAATTGCCAAATCAGCTTCTGGGCAGATATTTGTTGCTTCTGGATTACCAGTGAAGCCATCATTCCAAAAACTTTTGGTGCATTCTGGTACTGACATAAAGTTGAGTAGCTCCCGTGATGGGGTTCTTCTACCAATGAGTCAGTCTCTTGTCAAATCCAAGAGAGGCCAAGATGTACAAAATAGAGTTGTTGCATTAGATCGTGCAAATGCAGAAGATGCCCTACTTCCGATTCCAAAGATCTTTGATTCGCATGAAAAAAAGAAAAAGCATGAAAAATTGCGCTTTGACAAAGATGAAGTAATGGCCGATTTGGAGGACAGCAGGAGTCTCTCTGGCCCTGTGAAGACCAAAGATGGCACGGTAGAATTTGAACTTGACACTGGAGCAATTTGCATGGAGGACCGGTTGAGATCATTAGGAATACTCAGTAAAGTAGATGACCAAACAATCAAATCCACACTAAATTCTGCAGCATTTAAGAGTATTGACATTCAGACAAATATGCCACAAAAGAAGATGAGGGCAGCTGTACTGTCAATGGTACCTAGTGATGCATACAAGTTATTGGGAGTTTTGGTGGCCATTTGGCAAACAAGGTCTAGCAGTGGAAATTATGTACTTCCATGGATATACAGCATATTGGTAAATCACAGTCATTATGTCATGTCAGAAGAACCTGAGACCCAGGTGCTTAGTTCCTTGTTCAAGGTCACCAAATCTAGAAAGGCAGCTATTCAGCCTTTATTACAATTATCCGGTCGTTTGCAGCTTGTAGTGGCACAGATTGACAAGGCAACAAACACCGGAAATCAAATTTTATTGCATGAGGACCAGAAGGATGAAAGTGAAGATGAGGATGAAGATGTAAATGAAATTCACTTCAGGGAAGAAGATGATGACTCTGAAATAAGCAGTGACGATGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

628

Amino Acids

68.57

Weight (kDa)

6.07

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	85 - 234	5.6e-13	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	86 - 182	1e-08	THOC3 beta-propeller domain
WDR55	PF24796	87 - 238	5.1e-11	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	89 - 231	2.7e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	96 - 231	7.1e-12	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	106 - 228	2e-15	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	114 - 233	6e-14	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	116 - 238	6.6e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	121 - 239	6.8e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	126 - 238	1e-07	MABP1/WDR62 first WD40 domain
Utp12	PF04003	486 - 577	1.1e-09	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11240
fragaria_vesca	FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810
malus_domestica	MD13G1161900.v1.1 MD16G1161700.v1.1
prunus_persica	Prupe.1G129200_v2.0.a1
pyrus_communis	pycom13g13800
rosa_chinensis	RchiOBHm_Chr4g0423831
rosa_laevigata	RLG00000007528
rosa_multiflora	Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365950
rosa_rugosa	Rorug04G0191100 Rorug04G0191200 Rorug04G0191200
rosa_samantha	Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300
rosa_wichuraiana	Rw4G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	744, 937
Acc36I	ACCTGC	4 cut(s)	338, 744, 776, 937
Acc65I	GGTACC	1 cut(s)	1498
AccB1I	GGYRCC	1 cut(s)	1498
AcoI	YGGCCR	3 cut(s)	586, 1260, 1536
AcsI	RAATTY	6 cut(s)	550, 879, 1322, 1420, 1770, 1830
AcuI	CTGAAG	3 cut(s)	870, 915, 1822
AfaI	GTAC	6 cut(s)	635, 1045, 1131, 1488, 1500, 1575
AfiI	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
AgeI	ACCGGT	1 cut(s)	1359
AgsI	TTSAA	4 cut(s)	463, 550, 1328, 1663
AhdI	GACNNNNNGTC	1 cut(s)	904
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	592, 1641
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	4 cut(s)	15, 1104, 1289, 1631
AlwNI	CAGNNNCTG	2 cut(s)	530, 974
AoxI	GGCC	5 cut(s)	586, 1120, 1260, 1291, 1536
ApeKI	GCWGC	8 cut(s)	308, 527, 530, 941, 1427, 1481, 1685, 1723
ApoI	RAATTY	6 cut(s)	550, 879, 1322, 1420, 1770, 1830
AsiGI	ACCGGT	1 cut(s)	1359
Asp700I	GAANNNNTTC	2 cut(s)	215, 382
Asp718I	GGTACC	1 cut(s)	1498
AspLEI	GCGC	1 cut(s)	1239
AspS9I	GGNCC	3 cut(s)	1292, 1357, 1786
AsuHPI	GGTGA	5 cut(s)	296, 668, 791, 918, 1660
AvaII	GGWCC	2 cut(s)	1357, 1786
BaeI	ACNNNNGTAYC	2 cut(s)	563, 596
BalI	TGGCCA	1 cut(s)	1538
BanI	GGYRCC	1 cut(s)	1498
BarI	GAAGNNNNNNTAC	2 cut(s)	1161, 1193
BbsI	GAAGAC	2 cut(s)	903, 1307
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	8 cut(s)	295, 517, 539, 928, 1439, 1493, 1697, 1735
BccI	CCATC	7 cut(s)	404, 500, 597, 680, 1021, 1067, 1304
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	594, 1643
BcoDI	GTCTC	4 cut(s)	15, 1104, 1289, 1631
BfaI	CTAG	4 cut(s)	518, 1503, 1557, 1677
BfmI	CTRYAG	3 cut(s)	522, 648, 1425
BfuAI	ACCTGC	4 cut(s)	338, 744, 776, 937
BglII	AGATCT	1 cut(s)	1194
BisI	GCNGC	8 cut(s)	309, 528, 531, 942, 1428, 1482, 1686, 1724
BlsI	GCNGC	8 cut(s)	310, 529, 532, 943, 1429, 1483, 1687, 1725
Bme1390I	CCNGG	2 cut(s)	594, 1643
Bme18I	GGWCC	2 cut(s)	1357, 1786
BmeRI	GACNNNNNGTC	1 cut(s)	904
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	1292, 1357, 1786
BmiI	GGNNCC	1 cut(s)	1500
BmrFI	CCNGG	2 cut(s)	594, 1643
BmsI	GCATC	4 cut(s)	193, 772, 1162, 1498
BpiI	GAAGAC	2 cut(s)	903, 1307
BplI	GAGNNNNNCTC	4 cut(s)	171, 203, 1084, 1116
BpmI	CTGGAG	2 cut(s)	615, 1359
Bsa29I	ATCGAT	1 cut(s)	429
BsaI	GGTCTC	2 cut(s)	15, 1631
BsaJI	CCNNGG	2 cut(s)	1580, 1641
BsaWI	WCCGGW	3 cut(s)	1359, 1712, 1760
BsaXI	ACNNNNNCTCC	4 cut(s)	1346, 1376, 1518, 1548
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
Bse118I	RCCGGY	2 cut(s)	401, 1359
Bse1I	ACTGG	3 cut(s)	280, 1004, 1342
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	594, 1643
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	1580, 1641
BseGI	GGATG	4 cut(s)	420, 589, 1801, 1819
BseLI	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	6 cut(s)	114, 204, 612, 822, 1396, 1626
BseNI	ACTGG	3 cut(s)	280, 1004, 1342
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	8 cut(s)	295, 517, 539, 928, 1439, 1493, 1697, 1735
BsgI	GTGCAG	1 cut(s)	516
Bsh1285I	CGRYCG	2 cut(s)	82, 1717
BshFI	GGCC	5 cut(s)	588, 1122, 1262, 1293, 1538
BshNI	GGYRCC	1 cut(s)	1498
BshTI	ACCGGT	1 cut(s)	1359
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	2 cut(s)	82, 1717
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	6 cut(s)	72, 402, 585, 1360, 1713, 1761
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	31, 1074, 1075
BsmAI	GTCTC	4 cut(s)	15, 1104, 1289, 1631
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	3 cut(s)	850, 868, 1036
BsnI	GGCC	5 cut(s)	588, 1122, 1262, 1293, 1538
Bso31I	GGTCTC	2 cut(s)	15, 1631
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	4 cut(s)	612, 1153, 1194, 1367
Bsp19I	CCATGG	1 cut(s)	1580
BspANI	GGCC	5 cut(s)	588, 1122, 1262, 1293, 1538
BspCNI	CTCAG	6 cut(s)	115, 203, 613, 821, 1395, 1627
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	1500
BspMAI	CTGCAG	2 cut(s)	652, 1429
BspMI	ACCTGC	4 cut(s)	338, 744, 776, 937
BspT107I	GGYRCC	1 cut(s)	1498
BspTNI	GGTCTC	2 cut(s)	15, 1631
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	401, 1359
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	3 cut(s)	280, 1004, 1342
BssAI	RCCGGY	2 cut(s)	401, 1359
BssECI	CCNNGG	2 cut(s)	1580, 1641
BssMI	GATC	4 cut(s)	612, 1153, 1194, 1367
BssT1I	CCWWGG	1 cut(s)	1580
Bst2UI	CCWGG	2 cut(s)	594, 1643
Bst4CI	ACNGT	7 cut(s)	80, 103, 767, 902, 1318, 1491, 1610
BstAPI	GCANNNNNTGC	2 cut(s)	938, 1172
BstAUI	TGTACA	1 cut(s)	1129
BstDEI	CTNAG	8 cut(s)	123, 190, 621, 799, 808, 1382, 1635, 1649
BstDSI	CCRYGG	1 cut(s)	1580
BstEII	GGTNACC	1 cut(s)	1666
BstF5I	GGATG	4 cut(s)	420, 589, 1801, 1819
BstHHI	GCGC	1 cut(s)	1239
BstKTI	GATC	4 cut(s)	615, 1156, 1197, 1370
BstMAI	GTCTC	4 cut(s)	15, 1104, 1289, 1631
BstMBI	GATC	4 cut(s)	612, 1153, 1194, 1367
BstMCI	CGRYCG	2 cut(s)	82, 1717
BstMWI	GCNNNNNNNGC	5 cut(s)	527, 719, 938, 968, 1172
BstNI	CCWGG	2 cut(s)	594, 1643
BstPI	GGTNACC	1 cut(s)	1666
BstSCI	CCNGG	2 cut(s)	592, 1641
BstSFI	CTRYAG	3 cut(s)	522, 648, 1425
BstV1I	GCAGC	8 cut(s)	295, 517, 539, 928, 1439, 1493, 1697, 1735
BstV2I	GAAGAC	2 cut(s)	903, 1307
BstX2I	RGATCY	1 cut(s)	1194
BstYI	RGATCY	1 cut(s)	1194
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	5 cut(s)	588, 1122, 1262, 1293, 1538
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	1580
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	420, 589, 1801, 1819
BtsI	GCAGTG	3 cut(s)	396, 1567, 1876
BtsIMutI	CAGTG	8 cut(s)	99, 396, 618, 772, 1011, 1335, 1567, 1876
BveI	ACCTGC	4 cut(s)	338, 744, 776, 937
CaiI	CAGNNNCTG	2 cut(s)	530, 974
CfoI	GCGC	1 cut(s)	1239
Cfr10I	RCCGGY	2 cut(s)	401, 1359
Cfr13I	GGNCC	3 cut(s)	1292, 1357, 1786
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	6 cut(s)	634, 1044, 1130, 1487, 1499, 1574
CspAI	ACCGGT	1 cut(s)	1359
CviAII	CATG	8 cut(s)	208, 344, 1208, 1226, 1351, 1581, 1621, 1781
CviQI	GTAC	6 cut(s)	634, 1044, 1130, 1487, 1499, 1574
DdeI	CTNAG	8 cut(s)	123, 190, 621, 799, 808, 1382, 1635, 1649
DpnI	GATC	4 cut(s)	614, 1155, 1196, 1369
DpnII	GATC	4 cut(s)	612, 1153, 1194, 1367
DriI	GACNNNNNGTC	1 cut(s)	904
EaeI	YGGCCR	3 cut(s)	586, 1260, 1536
Eam1105I	GACNNNNNGTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	1580
Eco31I	GGTCTC	2 cut(s)	15, 1631
Eco47I	GGWCC	2 cut(s)	1357, 1786
Eco57I	CTGAAG	3 cut(s)	870, 915, 1822
Eco91I	GGTNACC	1 cut(s)	1666
EcoO65I	GGTNACC	1 cut(s)	1666
EcoRII	CCWGG	2 cut(s)	592, 1641
EcoT14I	CCWWGG	1 cut(s)	1580
EcoT22I	ATGCAT	1 cut(s)	1513
ErhI	CCWWGG	1 cut(s)	1580
FaeI	CATG	8 cut(s)	211, 347, 1211, 1229, 1354, 1584, 1624, 1784
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	8 cut(s)	207, 343, 1207, 1225, 1350, 1580, 1620, 1780
Fnu4HI	GCNGC	8 cut(s)	309, 528, 531, 942, 1428, 1482, 1686, 1724
FokI	GGATG	4 cut(s)	427, 576, 1808, 1826
Fsp4HI	GCNGC	8 cut(s)	309, 528, 531, 942, 1428, 1482, 1686, 1724
FspBI	CTAG	4 cut(s)	518, 1503, 1557, 1677
GlaI	GCGC	1 cut(s)	1238
GluI	GCNGC	8 cut(s)	309, 528, 531, 942, 1428, 1482, 1686, 1724
GsuI	CTGGAG	2 cut(s)	615, 1359
HaeIII	GGCC	5 cut(s)	588, 1122, 1262, 1293, 1538
HapII	CCGG	6 cut(s)	72, 402, 585, 1360, 1713, 1761
HhaI	GCGC	1 cut(s)	1239
Hin1II	CATG	8 cut(s)	211, 347, 1211, 1229, 1354, 1584, 1624, 1784
Hin6I	GCGC	1 cut(s)	1237
HinP1I	GCGC	1 cut(s)	1237
HindIII	AAGCTT	2 cut(s)	245, 465
HinfI	GANTC	7 cut(s)	84, 431, 1093, 1186, 1202, 1282, 1856
HpaII	CCGG	6 cut(s)	72, 402, 585, 1360, 1713, 1761
HphI	GGTGA	5 cut(s)	296, 668, 791, 918, 1660
Hpy166II	GTNNAC	3 cut(s)	129, 219, 926
Hpy188III	TCNNGA	6 cut(s)	28, 88, 118, 299, 996, 1677
Hpy8I	GTNNAC	3 cut(s)	129, 219, 926
Hpy99I	CGWCG	2 cut(s)	49, 80
HpyAV	CCTTC	2 cut(s)	100, 1786
HpyCH4III	ACNGT	7 cut(s)	80, 103, 767, 902, 1318, 1491, 1610
HpyCH4IV	ACGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	5 cut(s)	527, 719, 938, 968, 1172
HpyF3I	CTNAG	8 cut(s)	123, 190, 621, 799, 808, 1382, 1635, 1649
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	8 cut(s)	211, 347, 1211, 1229, 1354, 1584, 1624, 1784
HspAI	GCGC	1 cut(s)	1237
KpnI	GGTACC	1 cut(s)	1502
Kzo9I	GATC	4 cut(s)	612, 1153, 1194, 1367
LmnI	GCTCC	4 cut(s)	596, 727, 1070, 1340
Lsp1109I	GCAGC	8 cut(s)	295, 517, 539, 928, 1439, 1493, 1697, 1735
LweI	GCATC	4 cut(s)	193, 772, 1162, 1498
MaeI	CTAG	4 cut(s)	518, 1503, 1557, 1677
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	331, 1666, 1871
MalI	GATC	4 cut(s)	614, 1155, 1196, 1369
MboI	GATC	4 cut(s)	612, 1153, 1194, 1367
MflI	RGATCY	1 cut(s)	1194
MhlI	GDGCHC	1 cut(s)	732
MlsI	TGGCCA	1 cut(s)	1538
MluNI	TGGCCA	1 cut(s)	1538
MlyI	GAGTC	3 cut(s)	1102, 1291, 1850
Mox20I	TGGCCA	1 cut(s)	1538
Mph1103I	ATGCAT	1 cut(s)	1513
MroXI	GAANNNNTTC	2 cut(s)	215, 382
MscI	TGGCCA	1 cut(s)	1538
MseI	TTAA	2 cut(s)	39, 1434
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	1538
MspA1I	CMGCKG	2 cut(s)	530, 1484
MspI	CCGG	6 cut(s)	72, 402, 585, 1360, 1713, 1761
MspR9I	CCNGG	2 cut(s)	594, 1643
Mva1269I	GAATGC	3 cut(s)	850, 868, 1036
MvaI	CCWGG	2 cut(s)	594, 1643
MwoI	GCNNNNNNNGC	5 cut(s)	527, 719, 938, 968, 1172
NcoI	CCATGG	1 cut(s)	1580
NdeII	GATC	4 cut(s)	612, 1153, 1194, 1367
NlaIII	CATG	8 cut(s)	211, 347, 1211, 1229, 1354, 1584, 1624, 1784
NlaIV	GGNNCC	1 cut(s)	1500
NmuCI	GTSAC	2 cut(s)	1666, 1871
NsiI	ATGCAT	1 cut(s)	1513
PaqCI	CACCTGC	2 cut(s)	744, 937
PctI	GAATGC	3 cut(s)	850, 868, 1036
PdmI	GAANNNNTTC	2 cut(s)	215, 382
PfeI	GAWTC	4 cut(s)	84, 431, 1186, 1202
PflFI	GACNNNGTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	592
PinAI	ACCGGT	1 cut(s)	1359
PkrI	GCNGC	8 cut(s)	310, 529, 532, 943, 1429, 1483, 1687, 1725
PleI	GAGTC	3 cut(s)	1101, 1290, 1850
PpsI	GAGTC	3 cut(s)	1101, 1290, 1850
Psp6I	CCWGG	2 cut(s)	592, 1641
PspEI	GGTNACC	1 cut(s)	1666
PspGI	CCWGG	2 cut(s)	592, 1641
PspN4I	GGNNCC	1 cut(s)	1500
PspPI	GGNCC	3 cut(s)	1292, 1357, 1786
PstI	CTGCAG	2 cut(s)	652, 1429
PstNI	CAGNNNCTG	2 cut(s)	530, 974
PsuI	RGATCY	1 cut(s)	1194
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	2 cut(s)	530, 1484
RsaI	GTAC	6 cut(s)	635, 1045, 1131, 1488, 1500, 1575
RsaNI	GTAC	6 cut(s)	634, 1044, 1130, 1487, 1499, 1574
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	39, 1434
SatI	GCNGC	8 cut(s)	309, 528, 531, 942, 1428, 1482, 1686, 1724
Sau3AI	GATC	4 cut(s)	612, 1153, 1194, 1367
Sau96I	GGNCC	3 cut(s)	1292, 1357, 1786
SchI	GAGTC	3 cut(s)	1102, 1291, 1850
ScrFI	CCNGG	2 cut(s)	594, 1643
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	4 cut(s)	193, 772, 1162, 1498
SfcI	CTRYAG	3 cut(s)	522, 648, 1425
SinI	GGWCC	2 cut(s)	1357, 1786
SmiMI	CAYNNNNRTG	1 cut(s)	206
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	4 cut(s)	518, 1503, 1557, 1677
StyD4I	CCNGG	2 cut(s)	592, 1641
StyI	CCWWGG	1 cut(s)	1580
TaaI	ACNGT	7 cut(s)	80, 103, 767, 902, 1318, 1491, 1610
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	4 cut(s)	82, 320, 429, 470
TatI	WGTACW	4 cut(s)	633, 1129, 1486, 1573
TfiI	GAWTC	4 cut(s)	84, 431, 1186, 1202
Tru1I	TTAA	2 cut(s)	39, 1434
Tru9I	TTAA	2 cut(s)	39, 1434
TscAI	CASTG	8 cut(s)	106, 403, 625, 772, 1011, 1342, 1567, 1876
TseFI	GTSAC	2 cut(s)	1666, 1871
TseI	GCWGC	8 cut(s)	308, 527, 530, 941, 1427, 1481, 1685, 1723
Tsp45I	GTSAC	2 cut(s)	1666, 1871
TspDTI	ATGAA	8 cut(s)	224, 554, 1224, 1242, 1266, 1812, 1830, 1842
TspGWI	ACGGA	2 cut(s)	33, 874
TspRI	CASTG	8 cut(s)	106, 403, 625, 772, 1011, 1342, 1567, 1876
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	1357, 1786
XapI	RAATTY	6 cut(s)	550, 879, 1322, 1420, 1770, 1830
XbaI	TCTAGA	1 cut(s)	1676
XmnI	GAANNNNTTC	2 cut(s)	215, 382
XspI	CTAG	4 cut(s)	518, 1503, 1557, 1677
Zsp2I	ATGCAT	1 cut(s)	1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.