Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041036.1

Orthogroup ID

OG0006682

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 990

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

atgaagatattgaatttgtctgaccacaaaaagatacagaagttttccggccatcctggagctgttcgctgtatgatcttcactgagaatgggaagtacattctctcatctgcagttggtgaaaggcatattgcagtatggaatatagatggtgggaaaaagcagtcagcaagtgctgttctcgcaatggagcaccctgctgtgttccttgatagcaggtgcatagacggtggggaagttggtgatgcaggtctatatgtcttagcaatctcagaagttggcgtttgttatttttggtttggaaagaatgctgaagaattacggaatgccaagcctacaaaaatttcagtatcttctgaagacagtttgtctgaaactcataggggttcacctgcaatatttgctgcaattttccaaggaattgccaaatcagcttctgggcagatatttgttgcttctggattaccagtgaagccatcattccaaaaacttttggtgcattctggtactgacataaagttgagtagctcccgtgatggggttcttctaccaattagtcagtctcttgtcaaatccaagagaggccaagatgtacaaaatagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

201

Amino Acids

21.59

Weight (kDa)

9.28

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11240
fragaria_vesca	FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810
malus_domestica	MD13G1161900.v1.1 MD16G1161700.v1.1
prunus_persica	Prupe.1G129200_v2.0.a1
pyrus_communis	pycom13g13800
rosa_chinensis	RchiOBHm_Chr4g0423831
rosa_laevigata	RLG00000007528
rosa_multiflora	Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365950
rosa_rugosa	Rorug04G0191100 Rorug04G0191200 Rorug04G0191200
rosa_samantha	Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300
rosa_wichuraiana	Rw4G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	207, 400
Acc36I	ACCTGC	3 cut(s)	207, 239, 400
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	13, 342
AcuI	CTGAAG	2 cut(s)	333, 378
AfaI	GTAC	3 cut(s)	98, 508, 594
AfiI	CCNNNNNNNGG	2 cut(s)	537, 538
AgsI	TTSAA	1 cut(s)	13
AhdI	GACNNNNNGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	62, 434, 528
AluI	AGCT	3 cut(s)	62, 434, 528
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	567
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	49, 583
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	13, 342
AsuHPI	GGTGA	3 cut(s)	131, 254, 381
BaeI	ACNNNNGTAYC	2 cut(s)	26, 59
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	4 cut(s)	60, 143, 484, 530
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	3 cut(s)	207, 239, 400
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	57
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 538
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	537, 538
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	75, 285
BseNI	ACTGG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	51, 585
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	537, 538
BsmAI	GTCTC	1 cut(s)	567
BsmI	GAATGC	3 cut(s)	313, 331, 499
BsnI	GGCC	2 cut(s)	51, 585
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	51, 585
BspCNI	CTCAG	2 cut(s)	76, 284
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	3 cut(s)	207, 239, 400
BsrDI	GCAATG	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	230, 365
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	3 cut(s)	84, 262, 271
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 401, 431
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	51, 585
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	81, 474
BveI	ACCTGC	3 cut(s)	207, 239, 400
CaiI	CAGNNNCTG	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	97, 507, 593
CviJI	RGCY	7 cut(s)	51, 62, 334, 434, 475, 528, 585
CviKI_1	RGCY	7 cut(s)	51, 62, 334, 434, 475, 528, 585
CviQI	GTAC	3 cut(s)	97, 507, 593
DdeI	CTNAG	3 cut(s)	84, 262, 271
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	49
Eam1105I	GACNNNNNGTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	333, 378
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaiI	YATR	9 cut(s)	74, 129, 139, 146, 224, 256, 258, 381, 515
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	51, 585
HapII	CCGG	1 cut(s)	48
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	131, 254, 381
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	22, 274, 358, 373
Hpy188III	TCNNGA	1 cut(s)	459
Hpy8I	GTNNAC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	230, 365
HpyCH4V	TGCA	7 cut(s)	113, 134, 222, 248, 395, 407, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 401, 431
HpyF3I	CTNAG	3 cut(s)	84, 262, 271
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	59, 190, 533
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	235
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	6 cut(s)	16, 70, 326, 345, 371, 536
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	6 cut(s)	13, 317, 342, 408, 420, 552
MnlI	CCTC	1 cut(s)	575
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	3 cut(s)	313, 331, 499
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	182, 401, 431
NdeII	GATC	1 cut(s)	75
PaqCI	CACCTGC	2 cut(s)	207, 400
PctI	GAATGC	3 cut(s)	313, 331, 499
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	98, 508, 594
RsaNI	GTAC	3 cut(s)	97, 507, 593
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	64, 221, 253, 394, 436, 530
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	111
Sse9I	AATT	6 cut(s)	13, 317, 342, 408, 420, 552
SspI	AATATT	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	230, 365
TasI	AATT	6 cut(s)	13, 317, 342, 408, 420, 552
TatI	WGTACW	2 cut(s)	96, 592
TscAI	CASTG	2 cut(s)	88, 474
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	88, 474
XapI	RAATTY	2 cut(s)	13, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.