Prupe.1G129200_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10062317 .. 10068257
5941 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G129200.1

Sequence Viewer

Length: 1890 bp
ATGAGCTCGTCAAATATCAGAGACCTCTTGACGGCTTTTAGTCCGTCTTTGGACTTGTTCGCCATCAGCTCTGGAGATGGTCGAATTAAGATTTGGGACACTGTGAAAGGTCAAGTCCAGACAGAGTTCACAGACATTGTATCATCAGAAGATACAAGCATATATGCAAAACGAGAAAGAGGGCACCTCTCAGTTGATTACACATGCATGAAGTGGTTCTCTTCCGAAAGAAAGAAGAAAAGGAAGCTTGGTTGTTCATTGTTGGTTTTGGGAACTGGCGGTGGTGATGTTTTGGCACTTGATGTGTCTGCTGGTCAATTGAAATGGAGACTGAACGACTGCCATGCTGGTGGCGTTAGCTCCATATCATTTCCAAGAAATGCTTCGTGTATTTACACTGCCGGTGCTGATGGGATGATTTGTGAAATTGATGCTTTGACAGGAAACCTGTTGGGGAAGTTCAAAGCTTCCACAAAGGCAATCTCTTCTATGTCTGTTTCGTTCGATGGGAAGATATTAGCAACTGCGGCTGCACAAATGAAGATTTTCAGTTTGTCTGATCACAAGAAGATACAGAAGTTTTCTGGCCATCCGGGAGCTGTTCGCTGTATGATCTTCAGTGAAGATGGGAAGTACATCCTCTCATCTGCAGTTGGTGAAAGGTATATTGCAGTATGGAATATAGGTGGTGGAAAAAAGCAGTCAGCAAGTGCTGTGCTTGCAATGGAGCACCCTGCTGTCTTTGTAGATAGCAGGTTTATAGACAATGGTGAAGTTGGTGATATGGGCCTATATGTATTAGCGATTTCAGAAGTCGGTGTTTGTTATTTTTGGTTTGGAAAGAATATTGAAGAATTGCGGAATGCCAAGCCTACAAGAATTTCAGTATCATCTGAAGTCATTTTGACCAAAACTCAGAAGGGTGCAGTAACTACAATATTTGCTGCGGTTTTGCAAGGAATTGTAAAAGCTGCTTCTGGGCAGATATTTGTTGCTTATGGATTACCAGTGAAGCCATTATTCCAGAAAATTTTGGTGCATTCTGGCACAGACATAAAGTTGAGTAGCTCCCATGATGGAATTCTTCTACCAATGAGTCAGTCTCTTGTCAAATCTAAGAAAGGACAAAATGTACAAAATAGAGTTATTGCATTGGATCGTGCAAATGCAGAAGATGCCTTGCTTCCAATTCCAAAGATTTTTGATTCACACGAGAAAAAGAAAAGACATGAAAAATTAAGTTTTGGCAAAGATGAAGTAATGGCTGATTTGGATGACAGCGGGAGTCATGCTGGCCTTATGAAGAGCAAAGATGACATGGTAGAATTTGAAGCTGACACTGCAGCAATTTGCATGGAGGACCGACTGAGATCATTAGGGATACTTAGCAAAGCAGATGACCTTATAATTAACTCTACACTCAACTCTGCAACATTCAAGAGTATTGATCTTCACACTAATATGCCACAGAAGAAGATGAGGGCAGCTGTTTTGTCATTAGAACCTAGTGACGCGTGCAAGTTATTGGGAGTCTTGGTGGCCATGTGGCAGACAAGGTCTAGCAGTGGGAATTATGTTCTTCCATGGATATATAGCATATTGGTAAATCACAGTCATCATATCATGTCACAAGAACCCGAAACTCAGATGCTTAGCTCCTTGCTCAAGGTTACCAAATCCAGAGGGGCAGCTATTCAGCCTTTATTACAATTATCGGGTCGTTTGCAACTTGTGATGGCACAGATTGACAAGGCAACCCACACCAAAACTCAAGTCTTATCGCACGAGAACCAAATGGATGAAAGCGAAGATGAGGATGAAGATGTAAATGAAATCCACTATGGTGAGGAAGATGATGATTCTGAAATAAGCAGTGATGATGATCAGTAG

Protein Analysis

630

Amino Acids

68.64

Weight (kDa)

6.13

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1406
Acc36I ACCTGC 1 cut(s) 744
AccB1I GGYRCC 1 cut(s) 183
AccII CGCG 1 cut(s) 1514
AciI CCGC 5 cut(s) 279, 527, 859, 947, 1281
AclWI GGATC 1 cut(s) 1164
AcoI YGGCCR 2 cut(s) 586, 1539
AcsI RAATTY 4 cut(s) 879, 1029, 1080, 1325
AcuI CTGAAG 2 cut(s) 601, 915
AfaI GTAC 2 cut(s) 635, 1134
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 1512
AgsI TTSAA 5 cut(s) 322, 463, 851, 1331, 1438
AjuI GAANNNNNNNTTGG 4 cut(s) 76, 108, 367, 399
AleI CACNNNNGTG 1 cut(s) 1842
Alw21I GWGCWC 2 cut(s) 8, 732
Alw26I GTCTC 3 cut(s) 15, 322, 1107
AlwI GGATC 1 cut(s) 1164
AoxI GGCC 4 cut(s) 586, 787, 1294, 1539
ApeKI GCWGC 6 cut(s) 530, 944, 971, 1343, 1484, 1688
ApoI RAATTY 4 cut(s) 879, 1029, 1080, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 1758, 1790
Asp700I GAANNNNTTC 3 cut(s) 215, 382, 545
AspS9I GGNCC 2 cut(s) 787, 1360
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 5 cut(s) 296, 668, 782, 791, 1856
AvaII GGWCC 1 cut(s) 1360
BaeGI GKGCMC 1 cut(s) 186
BaeI ACNNNNGTAYC 2 cut(s) 563, 596
BalI TGGCCA 2 cut(s) 588, 1541
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 2 cut(s) 1211, 1784
Bbv12I GWGCWC 2 cut(s) 8, 732
BbvI GCAGC 6 cut(s) 517, 931, 958, 1355, 1496, 1700
BccI CCATC 8 cut(s) 71, 71, 404, 500, 597, 620, 1070, 1729
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciVI GTATCC 1 cut(s) 1374
BclI TGATCA 2 cut(s) 559, 1882
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 3 cut(s) 15, 322, 1107
BfaI CTAG 2 cut(s) 1506, 1560
BfmI CTRYAG 2 cut(s) 648, 1341
BfuAI ACCTGC 1 cut(s) 744
BfuI GTATCC 1 cut(s) 1374
BisI GCNGC 7 cut(s) 528, 531, 945, 972, 1344, 1485, 1689
BlpI GCTNAGC 1 cut(s) 1652
BlsI GCNGC 7 cut(s) 529, 532, 946, 973, 1345, 1486, 1690
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 1 cut(s) 1360
BmgT120I GGNCC 2 cut(s) 787, 1360
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 421, 1165, 1638
BplI GAGNNNNNCTC 4 cut(s) 171, 203, 1087, 1119
BpmI CTGGAG 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 1652
BpuEI CTTGAG 2 cut(s) 1649, 1755
BpuMI CCSGG 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 1881
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 1583
BsaXI ACNNNNNCTCC 2 cut(s) 1521, 1551
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 280, 1007
Bse3DI GCAATG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 1881
BseDI CCNNGG 1 cut(s) 1583
BseGI GGATG 6 cut(s) 420, 589, 636, 1279, 1804, 1822
BseJI GATNNNNATC 1 cut(s) 1881
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 4 cut(s) 204, 929, 1358, 1658
BseNI ACTGG 2 cut(s) 280, 1007
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 6 cut(s) 517, 931, 958, 1355, 1496, 1700
BsgI GTGCAG 2 cut(s) 516, 945
Bsh1236I CGCG 1 cut(s) 1514
BshFI GGCC 4 cut(s) 588, 789, 1296, 1541
BshNI GGYRCC 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 8, 732
BsiSI CCGG 2 cut(s) 402, 593
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 3 cut(s) 15, 322, 1107
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 2 cut(s) 868, 1039
BsnI GGCC 4 cut(s) 588, 789, 1296, 1541
Bso31I GGTCTC 1 cut(s) 15
Bsp1286I GDGCHC 3 cut(s) 8, 186, 732
Bsp1407I TGTACA 1 cut(s) 1132
Bsp143I GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
Bsp1720I GCTNAGC 1 cut(s) 1652
Bsp19I CCATGG 1 cut(s) 1583
BspACI CCGC 5 cut(s) 279, 527, 859, 947, 1281
BspANI GGCC 4 cut(s) 588, 789, 1296, 1541
BspCNI CTCAG 4 cut(s) 203, 928, 1359, 1657
BspFNI CGCG 1 cut(s) 1514
BspLI GGNNCC 1 cut(s) 185
BspMAI CTGCAG 2 cut(s) 652, 1345
BspMI ACCTGC 1 cut(s) 744
BspPI GGATC 1 cut(s) 1164
BspQI GCTCTTC 1 cut(s) 1298
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 1132
BsrI ACTGG 2 cut(s) 280, 1007
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 1583
BssMI GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
BssSI CACGAG 2 cut(s) 1211, 1784
BssT1I CCWWGG 1 cut(s) 1583
Bst2BI CACGAG 2 cut(s) 1211, 1784
Bst4CI ACNGT 2 cut(s) 103, 1613
Bst6I CTCTTC 3 cut(s) 226, 490, 1298
BstAPI GCANNNNNTGC 1 cut(s) 1175
BstAUI TGTACA 1 cut(s) 1132
BstC8I GCNNGC 3 cut(s) 720, 1294, 1516
BstDEI CTNAG 7 cut(s) 190, 915, 1116, 1367, 1385, 1644, 1652
BstDSI CCRYGG 1 cut(s) 1583
BstEII GGTNACC 1 cut(s) 1669
BstF5I GGATG 6 cut(s) 420, 589, 636, 1279, 1804, 1822
BstFNI CGCG 1 cut(s) 1514
BstKTI GATC 6 cut(s) 562, 615, 1159, 1373, 1450, 1885
BstMAI GTCTC 3 cut(s) 15, 322, 1107
BstMBI GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
BstMWI GCNNNNNNNGC 4 cut(s) 527, 719, 1175, 1340
BstNSI RCATGY 1 cut(s) 207
BstPI GGTNACC 1 cut(s) 1669
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 2 cut(s) 648, 1341
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 1514
BstV1I GCAGC 6 cut(s) 517, 931, 958, 1355, 1496, 1700
BstXI CCANNNNNNTGG 1 cut(s) 350
BsuI GTATCC 1 cut(s) 1374
BsuRI GGCC 4 cut(s) 588, 789, 1296, 1541
BtgI CCRYGG 1 cut(s) 1583
BtsCI GGATG 6 cut(s) 420, 589, 636, 1279, 1804, 1822
BtsI GCAGTG 4 cut(s) 396, 1338, 1570, 1879
BtsIMutI CAGTG 7 cut(s) 99, 396, 625, 1014, 1338, 1570, 1879
BveI ACCTGC 1 cut(s) 744
Cac8I GCNNGC 3 cut(s) 720, 1294, 1516
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 787, 1360
CseI GACGC 1 cut(s) 1520
Csp6I GTAC 2 cut(s) 634, 1133
CviQI GTAC 2 cut(s) 634, 1133
DdeI CTNAG 7 cut(s) 190, 915, 1116, 1367, 1385, 1644, 1652
DpnI GATC 6 cut(s) 561, 614, 1158, 1372, 1449, 1884
DpnII GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
EaeI YGGCCR 2 cut(s) 586, 1539
Eam1104I CTCTTC 3 cut(s) 226, 490, 1298
EarI CTCTTC 3 cut(s) 226, 490, 1298
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 1583
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 1360
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 601, 915
Eco91I GGTNACC 1 cut(s) 1669
EcoICRI GAGCTC 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 1669
EcoRI GAATTC 1 cut(s) 1080
EcoT14I CCWWGG 1 cut(s) 1583
EcoT22I ATGCAT 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 1583
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 1 cut(s) 110
FauI CCCGC 1 cut(s) 1274
FbaI TGATCA 2 cut(s) 559, 1882
Fnu4HI GCNGC 7 cut(s) 528, 531, 945, 972, 1344, 1485, 1689
FokI GGATG 6 cut(s) 427, 576, 623, 1286, 1811, 1829
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 7 cut(s) 528, 531, 945, 972, 1344, 1485, 1689
FspBI CTAG 2 cut(s) 1506, 1560
GluI GCNGC 7 cut(s) 528, 531, 945, 972, 1344, 1485, 1689
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 4 cut(s) 588, 789, 1296, 1541
HapII CCGG 2 cut(s) 402, 593
HgaI GACGC 1 cut(s) 1520
HindIII AAGCTT 2 cut(s) 245, 465
HinfI GANTC 5 cut(s) 1096, 1205, 1285, 1530, 1859
HpaII CCGG 2 cut(s) 402, 593
HphI GGTGA 5 cut(s) 296, 668, 782, 791, 1856
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 9 cut(s) 20, 148, 226, 559, 811, 895, 918, 1647, 1864
Hpy188III TCNNGA 6 cut(s) 28, 72, 118, 1024, 1438, 1680
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 913
HpyCH4III ACNGT 2 cut(s) 103, 1613
HpyF10VI GCNNNNNNNGC 4 cut(s) 527, 719, 1175, 1340
HpyF3I CTNAG 7 cut(s) 190, 915, 1116, 1367, 1385, 1644, 1652
Ksp22I TGATCA 2 cut(s) 559, 1882
Kzo9I GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
LguI GCTCTTC 1 cut(s) 1298
LmnI GCTCC 5 cut(s) 365, 596, 727, 1073, 1661
Lsp1109I GCAGC 6 cut(s) 517, 931, 958, 1355, 1496, 1700
LweI GCATC 3 cut(s) 421, 1165, 1638
MaeI CTAG 2 cut(s) 1506, 1560
MaeIII GTNAC 4 cut(s) 928, 1508, 1626, 1669
MalI GATC 6 cut(s) 561, 614, 1158, 1372, 1449, 1884
MboI GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 3 cut(s) 8, 186, 732
MlsI TGGCCA 2 cut(s) 588, 1541
MluI ACGCGT 1 cut(s) 1512
MluNI TGGCCA 2 cut(s) 588, 1541
MlyI GAGTC 3 cut(s) 1105, 1294, 1539
MnlI CCTC 9 cut(s) 35, 173, 197, 650, 1351, 1473, 1676, 1807, 1840
Mox20I TGGCCA 2 cut(s) 588, 1541
Mph1103I ATGCAT 1 cut(s) 209
MroXI GAANNNNTTC 3 cut(s) 215, 382, 545
MscI TGGCCA 2 cut(s) 588, 1541
MseI TTAA 3 cut(s) 87, 1238, 1410
MslI CAYNNNNRTG 4 cut(s) 206, 348, 1460, 1842
Msp20I TGGCCA 2 cut(s) 588, 1541
MspA1I CMGCKG 2 cut(s) 1281, 1487
MspI CCGG 2 cut(s) 402, 593
MspR9I CCNGG 1 cut(s) 594
MunI CAATTG 1 cut(s) 317
Mva1269I GAATGC 2 cut(s) 868, 1039
MvnI CGCG 1 cut(s) 1514
MwoI GCNNNNNNNGC 4 cut(s) 527, 719, 1175, 1340
NciI CCSGG 1 cut(s) 594
NcoI CCATGG 1 cut(s) 1583
NdeII GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 1508, 1626
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 207
OliI CACNNNNGTG 1 cut(s) 1842
PciSI GCTCTTC 1 cut(s) 1298
PctI GAATGC 2 cut(s) 868, 1039
PdmI GAANNNNTTC 3 cut(s) 215, 382, 545
PfeI GAWTC 2 cut(s) 1205, 1859
PflFI GACNNNGTC 1 cut(s) 1555
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 7 cut(s) 529, 532, 946, 973, 1345, 1486, 1690
PleI GAGTC 3 cut(s) 1104, 1293, 1538
PpsI GAGTC 3 cut(s) 1104, 1293, 1538
PsiI TTATAA 1 cut(s) 1406
Psp124BI GAGCTC 1 cut(s) 8
PspEI GGTNACC 1 cut(s) 1669
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 787, 1360
PstI CTGCAG 2 cut(s) 652, 1345
PsyI GACNNNGTC 1 cut(s) 1555
PvuII CAGCTG 1 cut(s) 1487
RsaI GTAC 2 cut(s) 635, 1134
RsaNI GTAC 2 cut(s) 634, 1133
RseI CAYNNNNRTG 4 cut(s) 206, 348, 1460, 1842
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 1298
SaqAI TTAA 3 cut(s) 87, 1238, 1410
SatI GCNGC 7 cut(s) 528, 531, 945, 972, 1344, 1485, 1689
Sau3AI GATC 6 cut(s) 559, 612, 1156, 1370, 1447, 1882
Sau96I GGNCC 2 cut(s) 787, 1360
SchI GAGTC 3 cut(s) 1105, 1294, 1539
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 3 cut(s) 8, 186, 732
SfaNI GCATC 3 cut(s) 421, 1165, 1638
SfcI CTRYAG 2 cut(s) 648, 1341
SinI GGWCC 1 cut(s) 1360
SmiMI CAYNNNNRTG 4 cut(s) 206, 348, 1460, 1842
SmlI CTYRAG 2 cut(s) 1664, 1770
SmoI CTYRAG 2 cut(s) 1664, 1770
SsiI CCGC 5 cut(s) 279, 527, 859, 947, 1281
SspI AATATT 2 cut(s) 847, 939
SspMI CTAG 2 cut(s) 1506, 1560
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 1 cut(s) 1583
TaaI ACNGT 2 cut(s) 103, 1613
TaqI TCGA 2 cut(s) 82, 504
TaqII GACCGA 1 cut(s) 1377
TatI WGTACW 2 cut(s) 633, 1132
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 1205, 1859
Tru1I TTAA 3 cut(s) 87, 1238, 1410
Tru9I TTAA 3 cut(s) 87, 1238, 1410
TscAI CASTG 7 cut(s) 106, 403, 625, 1014, 1345, 1570, 1879
TseFI GTSAC 2 cut(s) 1508, 1626
TseI GCWGC 6 cut(s) 530, 944, 971, 1343, 1484, 1688
Tsp45I GTSAC 2 cut(s) 1508, 1626
TspDTI ATGAA 9 cut(s) 224, 246, 554, 1245, 1269, 1316, 1815, 1833, 1845
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 7 cut(s) 106, 403, 625, 1014, 1345, 1570, 1879
Tth111I GACNNNGTC 1 cut(s) 1555
VpaK11BI GGWCC 1 cut(s) 1360
XapI RAATTY 4 cut(s) 879, 1029, 1080, 1325
XceI RCATGY 1 cut(s) 207
XmnI GAANNNNTTC 3 cut(s) 215, 382, 545
XspI CTAG 2 cut(s) 1506, 1560
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.