WD repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11240 |
| fragaria_vesca | FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 |
| malus_domestica | MD13G1161900.v1.1 MD16G1161700.v1.1 |
| prunus_persica | Prupe.1G129200_v2.0.a1 |
| pyrus_communis | pycom13g13800 |
| rosa_chinensis | RchiOBHm_Chr4g0423831 |
| rosa_laevigata | RLG00000007528 |
| rosa_multiflora | Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00365950 |
| rosa_rugosa | Rorug04G0191100 Rorug04G0191200 Rorug04G0191200 |
| rosa_samantha | Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300 |
| rosa_wichuraiana | Rw4G021460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1406 |
| Acc36I | ACCTGC | 1 cut(s) | 744 |
| AccB1I | GGYRCC | 1 cut(s) | 183 |
| AccII | CGCG | 1 cut(s) | 1514 |
| AciI | CCGC | 5 cut(s) | 279, 527, 859, 947, 1281 |
| AclWI | GGATC | 1 cut(s) | 1164 |
| AcoI | YGGCCR | 2 cut(s) | 586, 1539 |
| AcsI | RAATTY | 4 cut(s) | 879, 1029, 1080, 1325 |
| AcuI | CTGAAG | 2 cut(s) | 601, 915 |
| AfaI | GTAC | 2 cut(s) | 635, 1134 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 31 |
| AflIII | ACRYGT | 1 cut(s) | 1512 |
| AgsI | TTSAA | 5 cut(s) | 322, 463, 851, 1331, 1438 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 76, 108, 367, 399 |
| AleI | CACNNNNGTG | 1 cut(s) | 1842 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 732 |
| Alw26I | GTCTC | 3 cut(s) | 15, 322, 1107 |
| AlwI | GGATC | 1 cut(s) | 1164 |
| AoxI | GGCC | 4 cut(s) | 586, 787, 1294, 1539 |
| ApeKI | GCWGC | 6 cut(s) | 530, 944, 971, 1343, 1484, 1688 |
| ApoI | RAATTY | 4 cut(s) | 879, 1029, 1080, 1325 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1758, 1790 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 215, 382, 545 |
| AspS9I | GGNCC | 2 cut(s) | 787, 1360 |
| AsuC2I | CCSGG | 1 cut(s) | 594 |
| AsuHPI | GGTGA | 5 cut(s) | 296, 668, 782, 791, 1856 |
| AvaII | GGWCC | 1 cut(s) | 1360 |
| BaeGI | GKGCMC | 1 cut(s) | 186 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 563, 596 |
| BalI | TGGCCA | 2 cut(s) | 588, 1541 |
| BanI | GGYRCC | 1 cut(s) | 183 |
| BanII | GRGCYC | 1 cut(s) | 8 |
| BauI | CACGAG | 2 cut(s) | 1211, 1784 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 732 |
| BbvI | GCAGC | 6 cut(s) | 517, 931, 958, 1355, 1496, 1700 |
| BccI | CCATC | 8 cut(s) | 71, 71, 404, 500, 597, 620, 1070, 1729 |
| BceAI | ACGGC | 1 cut(s) | 48 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 326, 360 |
| BciVI | GTATCC | 1 cut(s) | 1374 |
| BclI | TGATCA | 2 cut(s) | 559, 1882 |
| BcnI | CCSGG | 1 cut(s) | 594 |
| BcoDI | GTCTC | 3 cut(s) | 15, 322, 1107 |
| BfaI | CTAG | 2 cut(s) | 1506, 1560 |
| BfmI | CTRYAG | 2 cut(s) | 648, 1341 |
| BfuAI | ACCTGC | 1 cut(s) | 744 |
| BfuI | GTATCC | 1 cut(s) | 1374 |
| BisI | GCNGC | 7 cut(s) | 528, 531, 945, 972, 1344, 1485, 1689 |
| BlpI | GCTNAGC | 1 cut(s) | 1652 |
| BlsI | GCNGC | 7 cut(s) | 529, 532, 946, 973, 1345, 1486, 1690 |
| Bme1390I | CCNGG | 1 cut(s) | 594 |
| Bme18I | GGWCC | 1 cut(s) | 1360 |
| BmgT120I | GGNCC | 2 cut(s) | 787, 1360 |
| BmiI | GGNNCC | 1 cut(s) | 185 |
| BmrFI | CCNGG | 1 cut(s) | 594 |
| BmsI | GCATC | 3 cut(s) | 421, 1165, 1638 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 171, 203, 1087, 1119 |
| BpmI | CTGGAG | 1 cut(s) | 93 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1652 |
| BpuEI | CTTGAG | 2 cut(s) | 1649, 1755 |
| BpuMI | CCSGG | 1 cut(s) | 594 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1881 |
| BsaI | GGTCTC | 1 cut(s) | 15 |
| BsaJI | CCNNGG | 1 cut(s) | 1583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1521, 1551 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 31 |
| Bse118I | RCCGGY | 1 cut(s) | 401 |
| Bse1I | ACTGG | 2 cut(s) | 280, 1007 |
| Bse3DI | GCAATG | 1 cut(s) | 729 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1881 |
| BseDI | CCNNGG | 1 cut(s) | 1583 |
| BseGI | GGATG | 6 cut(s) | 420, 589, 636, 1279, 1804, 1822 |
| BseJI | GATNNNNATC | 1 cut(s) | 1881 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 31 |
| BseMI | GCAATG | 1 cut(s) | 729 |
| BseMII | CTCAG | 4 cut(s) | 204, 929, 1358, 1658 |
| BseNI | ACTGG | 2 cut(s) | 280, 1007 |
| BseSI | GKGCMC | 1 cut(s) | 186 |
| BseXI | GCAGC | 6 cut(s) | 517, 931, 958, 1355, 1496, 1700 |
| BsgI | GTGCAG | 2 cut(s) | 516, 945 |
| Bsh1236I | CGCG | 1 cut(s) | 1514 |
| BshFI | GGCC | 4 cut(s) | 588, 789, 1296, 1541 |
| BshNI | GGYRCC | 1 cut(s) | 183 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 732 |
| BsiSI | CCGG | 2 cut(s) | 402, 593 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 31 |
| BsmAI | GTCTC | 3 cut(s) | 15, 322, 1107 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsmI | GAATGC | 2 cut(s) | 868, 1039 |
| BsnI | GGCC | 4 cut(s) | 588, 789, 1296, 1541 |
| Bso31I | GGTCTC | 1 cut(s) | 15 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 186, 732 |
| Bsp1407I | TGTACA | 1 cut(s) | 1132 |
| Bsp143I | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1652 |
| Bsp19I | CCATGG | 1 cut(s) | 1583 |
| BspACI | CCGC | 5 cut(s) | 279, 527, 859, 947, 1281 |
| BspANI | GGCC | 4 cut(s) | 588, 789, 1296, 1541 |
| BspCNI | CTCAG | 4 cut(s) | 203, 928, 1359, 1657 |
| BspFNI | CGCG | 1 cut(s) | 1514 |
| BspLI | GGNNCC | 1 cut(s) | 185 |
| BspMAI | CTGCAG | 2 cut(s) | 652, 1345 |
| BspMI | ACCTGC | 1 cut(s) | 744 |
| BspPI | GGATC | 1 cut(s) | 1164 |
| BspQI | GCTCTTC | 1 cut(s) | 1298 |
| BspT107I | GGYRCC | 1 cut(s) | 183 |
| BspTNI | GGTCTC | 1 cut(s) | 15 |
| BsrDI | GCAATG | 1 cut(s) | 729 |
| BsrFI | RCCGGY | 1 cut(s) | 401 |
| BsrGI | TGTACA | 1 cut(s) | 1132 |
| BsrI | ACTGG | 2 cut(s) | 280, 1007 |
| BssAI | RCCGGY | 1 cut(s) | 401 |
| BssECI | CCNNGG | 1 cut(s) | 1583 |
| BssMI | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| BssSI | CACGAG | 2 cut(s) | 1211, 1784 |
| BssT1I | CCWWGG | 1 cut(s) | 1583 |
| Bst2BI | CACGAG | 2 cut(s) | 1211, 1784 |
| Bst4CI | ACNGT | 2 cut(s) | 103, 1613 |
| Bst6I | CTCTTC | 3 cut(s) | 226, 490, 1298 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1175 |
| BstAUI | TGTACA | 1 cut(s) | 1132 |
| BstC8I | GCNNGC | 3 cut(s) | 720, 1294, 1516 |
| BstDEI | CTNAG | 7 cut(s) | 190, 915, 1116, 1367, 1385, 1644, 1652 |
| BstDSI | CCRYGG | 1 cut(s) | 1583 |
| BstEII | GGTNACC | 1 cut(s) | 1669 |
| BstF5I | GGATG | 6 cut(s) | 420, 589, 636, 1279, 1804, 1822 |
| BstFNI | CGCG | 1 cut(s) | 1514 |
| BstKTI | GATC | 6 cut(s) | 562, 615, 1159, 1373, 1450, 1885 |
| BstMAI | GTCTC | 3 cut(s) | 15, 322, 1107 |
| BstMBI | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 527, 719, 1175, 1340 |
| BstNSI | RCATGY | 1 cut(s) | 207 |
| BstPI | GGTNACC | 1 cut(s) | 1669 |
| BstSCI | CCNGG | 1 cut(s) | 592 |
| BstSFI | CTRYAG | 2 cut(s) | 648, 1341 |
| BstSLI | GKGCMC | 1 cut(s) | 186 |
| BstUI | CGCG | 1 cut(s) | 1514 |
| BstV1I | GCAGC | 6 cut(s) | 517, 931, 958, 1355, 1496, 1700 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 350 |
| BsuI | GTATCC | 1 cut(s) | 1374 |
| BsuRI | GGCC | 4 cut(s) | 588, 789, 1296, 1541 |
| BtgI | CCRYGG | 1 cut(s) | 1583 |
| BtsCI | GGATG | 6 cut(s) | 420, 589, 636, 1279, 1804, 1822 |
| BtsI | GCAGTG | 4 cut(s) | 396, 1338, 1570, 1879 |
| BtsIMutI | CAGTG | 7 cut(s) | 99, 396, 625, 1014, 1338, 1570, 1879 |
| BveI | ACCTGC | 1 cut(s) | 744 |
| Cac8I | GCNNGC | 3 cut(s) | 720, 1294, 1516 |
| Cfr10I | RCCGGY | 1 cut(s) | 401 |
| Cfr13I | GGNCC | 2 cut(s) | 787, 1360 |
| CseI | GACGC | 1 cut(s) | 1520 |
| Csp6I | GTAC | 2 cut(s) | 634, 1133 |
| CviQI | GTAC | 2 cut(s) | 634, 1133 |
| DdeI | CTNAG | 7 cut(s) | 190, 915, 1116, 1367, 1385, 1644, 1652 |
| DpnI | GATC | 6 cut(s) | 561, 614, 1158, 1372, 1449, 1884 |
| DpnII | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| EaeI | YGGCCR | 2 cut(s) | 586, 1539 |
| Eam1104I | CTCTTC | 3 cut(s) | 226, 490, 1298 |
| EarI | CTCTTC | 3 cut(s) | 226, 490, 1298 |
| Ecl136II | GAGCTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 1583 |
| Eco24I | GRGCYC | 1 cut(s) | 8 |
| Eco31I | GGTCTC | 1 cut(s) | 15 |
| Eco47I | GGWCC | 1 cut(s) | 1360 |
| Eco53kI | GAGCTC | 1 cut(s) | 6 |
| Eco57I | CTGAAG | 2 cut(s) | 601, 915 |
| Eco91I | GGTNACC | 1 cut(s) | 1669 |
| EcoICRI | GAGCTC | 1 cut(s) | 6 |
| EcoO65I | GGTNACC | 1 cut(s) | 1669 |
| EcoRI | GAATTC | 1 cut(s) | 1080 |
| EcoT14I | CCWWGG | 1 cut(s) | 1583 |
| EcoT22I | ATGCAT | 1 cut(s) | 209 |
| EcoT38I | GRGCYC | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 1583 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 367, 399 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FauI | CCCGC | 1 cut(s) | 1274 |
| FbaI | TGATCA | 2 cut(s) | 559, 1882 |
| Fnu4HI | GCNGC | 7 cut(s) | 528, 531, 945, 972, 1344, 1485, 1689 |
| FokI | GGATG | 6 cut(s) | 427, 576, 623, 1286, 1811, 1829 |
| FriOI | GRGCYC | 1 cut(s) | 8 |
| Fsp4HI | GCNGC | 7 cut(s) | 528, 531, 945, 972, 1344, 1485, 1689 |
| FspBI | CTAG | 2 cut(s) | 1506, 1560 |
| GluI | GCNGC | 7 cut(s) | 528, 531, 945, 972, 1344, 1485, 1689 |
| GsuI | CTGGAG | 1 cut(s) | 93 |
| HaeIII | GGCC | 4 cut(s) | 588, 789, 1296, 1541 |
| HapII | CCGG | 2 cut(s) | 402, 593 |
| HgaI | GACGC | 1 cut(s) | 1520 |
| HindIII | AAGCTT | 2 cut(s) | 245, 465 |
| HinfI | GANTC | 5 cut(s) | 1096, 1205, 1285, 1530, 1859 |
| HpaII | CCGG | 2 cut(s) | 402, 593 |
| HphI | GGTGA | 5 cut(s) | 296, 668, 782, 791, 1856 |
| Hpy166II | GTNNAC | 1 cut(s) | 129 |
| Hpy188I | TCNGA | 9 cut(s) | 20, 148, 226, 559, 811, 895, 918, 1647, 1864 |
| Hpy188III | TCNNGA | 6 cut(s) | 28, 72, 118, 1024, 1438, 1680 |
| Hpy8I | GTNNAC | 1 cut(s) | 129 |
| HpyAV | CCTTC | 1 cut(s) | 913 |
| HpyCH4III | ACNGT | 2 cut(s) | 103, 1613 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 527, 719, 1175, 1340 |
| HpyF3I | CTNAG | 7 cut(s) | 190, 915, 1116, 1367, 1385, 1644, 1652 |
| Ksp22I | TGATCA | 2 cut(s) | 559, 1882 |
| Kzo9I | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| LguI | GCTCTTC | 1 cut(s) | 1298 |
| LmnI | GCTCC | 5 cut(s) | 365, 596, 727, 1073, 1661 |
| Lsp1109I | GCAGC | 6 cut(s) | 517, 931, 958, 1355, 1496, 1700 |
| LweI | GCATC | 3 cut(s) | 421, 1165, 1638 |
| MaeI | CTAG | 2 cut(s) | 1506, 1560 |
| MaeIII | GTNAC | 4 cut(s) | 928, 1508, 1626, 1669 |
| MalI | GATC | 6 cut(s) | 561, 614, 1158, 1372, 1449, 1884 |
| MboI | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| MfeI | CAATTG | 1 cut(s) | 317 |
| MhlI | GDGCHC | 3 cut(s) | 8, 186, 732 |
| MlsI | TGGCCA | 2 cut(s) | 588, 1541 |
| MluI | ACGCGT | 1 cut(s) | 1512 |
| MluNI | TGGCCA | 2 cut(s) | 588, 1541 |
| MlyI | GAGTC | 3 cut(s) | 1105, 1294, 1539 |
| MnlI | CCTC | 9 cut(s) | 35, 173, 197, 650, 1351, 1473, 1676, 1807, 1840 |
| Mox20I | TGGCCA | 2 cut(s) | 588, 1541 |
| Mph1103I | ATGCAT | 1 cut(s) | 209 |
| MroXI | GAANNNNTTC | 3 cut(s) | 215, 382, 545 |
| MscI | TGGCCA | 2 cut(s) | 588, 1541 |
| MseI | TTAA | 3 cut(s) | 87, 1238, 1410 |
| MslI | CAYNNNNRTG | 4 cut(s) | 206, 348, 1460, 1842 |
| Msp20I | TGGCCA | 2 cut(s) | 588, 1541 |
| MspA1I | CMGCKG | 2 cut(s) | 1281, 1487 |
| MspI | CCGG | 2 cut(s) | 402, 593 |
| MspR9I | CCNGG | 1 cut(s) | 594 |
| MunI | CAATTG | 1 cut(s) | 317 |
| Mva1269I | GAATGC | 2 cut(s) | 868, 1039 |
| MvnI | CGCG | 1 cut(s) | 1514 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 527, 719, 1175, 1340 |
| NciI | CCSGG | 1 cut(s) | 594 |
| NcoI | CCATGG | 1 cut(s) | 1583 |
| NdeII | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| NlaIV | GGNNCC | 1 cut(s) | 185 |
| NmuCI | GTSAC | 2 cut(s) | 1508, 1626 |
| NsiI | ATGCAT | 1 cut(s) | 209 |
| NspI | RCATGY | 1 cut(s) | 207 |
| OliI | CACNNNNGTG | 1 cut(s) | 1842 |
| PciSI | GCTCTTC | 1 cut(s) | 1298 |
| PctI | GAATGC | 2 cut(s) | 868, 1039 |
| PdmI | GAANNNNTTC | 3 cut(s) | 215, 382, 545 |
| PfeI | GAWTC | 2 cut(s) | 1205, 1859 |
| PflFI | GACNNNGTC | 1 cut(s) | 1555 |
| PfoI | TCCNGGA | 1 cut(s) | 592 |
| PkrI | GCNGC | 7 cut(s) | 529, 532, 946, 973, 1345, 1486, 1690 |
| PleI | GAGTC | 3 cut(s) | 1104, 1293, 1538 |
| PpsI | GAGTC | 3 cut(s) | 1104, 1293, 1538 |
| PsiI | TTATAA | 1 cut(s) | 1406 |
| Psp124BI | GAGCTC | 1 cut(s) | 8 |
| PspEI | GGTNACC | 1 cut(s) | 1669 |
| PspN4I | GGNNCC | 1 cut(s) | 185 |
| PspPI | GGNCC | 2 cut(s) | 787, 1360 |
| PstI | CTGCAG | 2 cut(s) | 652, 1345 |
| PsyI | GACNNNGTC | 1 cut(s) | 1555 |
| PvuII | CAGCTG | 1 cut(s) | 1487 |
| RsaI | GTAC | 2 cut(s) | 635, 1134 |
| RsaNI | GTAC | 2 cut(s) | 634, 1133 |
| RseI | CAYNNNNRTG | 4 cut(s) | 206, 348, 1460, 1842 |
| SacI | GAGCTC | 1 cut(s) | 8 |
| SapI | GCTCTTC | 1 cut(s) | 1298 |
| SaqAI | TTAA | 3 cut(s) | 87, 1238, 1410 |
| SatI | GCNGC | 7 cut(s) | 528, 531, 945, 972, 1344, 1485, 1689 |
| Sau3AI | GATC | 6 cut(s) | 559, 612, 1156, 1370, 1447, 1882 |
| Sau96I | GGNCC | 2 cut(s) | 787, 1360 |
| SchI | GAGTC | 3 cut(s) | 1105, 1294, 1539 |
| ScrFI | CCNGG | 1 cut(s) | 594 |
| SduI | GDGCHC | 3 cut(s) | 8, 186, 732 |
| SfaNI | GCATC | 3 cut(s) | 421, 1165, 1638 |
| SfcI | CTRYAG | 2 cut(s) | 648, 1341 |
| SinI | GGWCC | 1 cut(s) | 1360 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 206, 348, 1460, 1842 |
| SmlI | CTYRAG | 2 cut(s) | 1664, 1770 |
| SmoI | CTYRAG | 2 cut(s) | 1664, 1770 |
| SsiI | CCGC | 5 cut(s) | 279, 527, 859, 947, 1281 |
| SspI | AATATT | 2 cut(s) | 847, 939 |
| SspMI | CTAG | 2 cut(s) | 1506, 1560 |
| SstI | GAGCTC | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 592 |
| StyI | CCWWGG | 1 cut(s) | 1583 |
| TaaI | ACNGT | 2 cut(s) | 103, 1613 |
| TaqI | TCGA | 2 cut(s) | 82, 504 |
| TaqII | GACCGA | 1 cut(s) | 1377 |
| TatI | WGTACW | 2 cut(s) | 633, 1132 |
| TauI | GCSGC | 1 cut(s) | 530 |
| TfiI | GAWTC | 2 cut(s) | 1205, 1859 |
| Tru1I | TTAA | 3 cut(s) | 87, 1238, 1410 |
| Tru9I | TTAA | 3 cut(s) | 87, 1238, 1410 |
| TscAI | CASTG | 7 cut(s) | 106, 403, 625, 1014, 1345, 1570, 1879 |
| TseFI | GTSAC | 2 cut(s) | 1508, 1626 |
| TseI | GCWGC | 6 cut(s) | 530, 944, 971, 1343, 1484, 1688 |
| Tsp45I | GTSAC | 2 cut(s) | 1508, 1626 |
| TspDTI | ATGAA | 9 cut(s) | 224, 246, 554, 1245, 1269, 1316, 1815, 1833, 1845 |
| TspGWI | ACGGA | 1 cut(s) | 33 |
| TspRI | CASTG | 7 cut(s) | 106, 403, 625, 1014, 1345, 1570, 1879 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1555 |
| VpaK11BI | GGWCC | 1 cut(s) | 1360 |
| XapI | RAATTY | 4 cut(s) | 879, 1029, 1080, 1325 |
| XceI | RCATGY | 1 cut(s) | 207 |
| XmnI | GAANNNNTTC | 3 cut(s) | 215, 382, 545 |
| XspI | CTAG | 2 cut(s) | 1506, 1560 |
| Zsp2I | ATGCAT | 1 cut(s) | 209 |