pycom13g13800

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
9802293 .. 9808509
6217 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13800.4

Sequence Viewer

Length: 1485 bp
ATGGCCTCGTCAAACATCAGAGACCTCTTGACGGCGTTCAGTCCGTCTCTGGACTTGTTCGCCATCAGCTCCGGCGACGGTCGAATCAAGATTTGGGATACTGTGAAGGGGCAGGTCCAGACTGAGTTTACAGACATTGTAGCATCGGAAGATACAAGCATATGTGCTAAACGAGAAAGCGGGCACCTCTCAGTTGATTACACTTGCATGAAATGGTTCTCTTCTGAACGAAAGAAGAAGAGGAAGCTTGGTTCCTCATTTTTGGTTTTAGGAACCGGTGGCGGCGATGTTTTGGCGCTTGATGTGGCTGCTGGGCATTTGAAGTGGAGAGTTAACGATTGCCATGCTGGTGGTGTTAGCTCCATATCATTTGCAAGAAATGCATCGTGTATTTACACTGCTGGTGCTGATGGTATGATTTGTGAAATTGACTCTTTGACGGGAAACCTGTCAGGGAAGTTCAAAGCTTCCACTAAGGCAATCTCCTCGATGTCTGTTTCATCAGATGGGAAAATATTAGCAACTGCGGCTGCACAAGTGAAGATTTTCAATTTGTCTAACCACAAAAAGATACAGAAGTTTTCTGGCCATCCTGGTGCTGTTCGCTGTCTGATCTTCACTGAAGATGGGAAGTATATCCTCTCATCTGCAGTTGGTGAAAGGTATATTTCAGTGTGGAGTATAGCTGGTGGAAAAAAGCAGTCTGCAAGTGCTGTCCTTAAAATGGAGCACCCTGCTGTCTTCGTAGATAGCAGGTGCATAGACAGTGGGGAAGTTAGTGATGTAGGTCTATATGTTTTAGCAATTTCAGAAGTTGGCATTTGTTACTTTTGGTTTGGACAGAATACTGAAGAACTACGGAATGCGAAGCCTACAAAAATTTCACTATCTTCTGATGACATTTTGTCTACAACATACAAGGGCGCATTACCCACAATATTTGCTGCGGTTTTTCAAGGAATTGCGAAAGCTGCTTCTGGTCAGTTATTTGTCGCTTATGGGTCGCCAGTGAAACCATCATTCCAGAAAATTTTGGTGCATTCTGGAACAGACATAAAGTTGAGTAGTTCCCATGATGGGGTTCTTCTACCAATGAGTCAGTCCCTTGTCAAATCTAAGAAAGGACAAAATGTACAAAATAGAGTTATTGCATTAGATCGTGCAAATGCAGAAGAAGCCTTGCATCCAATGCCAAGGATTTTTGATTCACATGGGAAAAAGAAAAGACACGATAAATTGAGTTTTGACCAAGATGAAGAAATGGTTGATTTGGATGACAGTAGGGGTCACACTGGCCTTGTGAAGAGCAAAGATGGCATGGCAGAACTTGAAGCTGACACTGCGGCAATTTGCATGGAGGACAGACTGAGATCATTAGGGATAATTAGTAAAGTAGATGACCATACATTCAACTCTACACTCAATTCTGCAACATTTAAAGGAAGAGTATCGATCTTCAGACTAATATGCCACAGAAGAAGATGA

Protein Analysis

495

Amino Acids

53.45

Weight (kDa)

8.91

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 744
Acc36I ACCTGC 2 cut(s) 103, 744
AccB1I GGYRCC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 908
AciI CCGC 5 cut(s) 180, 282, 527, 947, 1343
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 2 cut(s) 879, 1029
AcuI CTGAAG 3 cut(s) 642, 870, 1441
AfaI GTAC 1 cut(s) 1134
AfiI CCNNNNNNNGG 4 cut(s) 31, 724, 1077, 1078
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 6 cut(s) 322, 463, 550, 956, 1331, 1411
AhdI GACNNNNNGTC 1 cut(s) 904
AjnI CCWGG 1 cut(s) 592
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
AluBI AGCT 7 cut(s) 69, 247, 360, 467, 686, 971, 1334
AluI AGCT 7 cut(s) 69, 247, 360, 467, 686, 971, 1334
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 2 cut(s) 15, 51
AoxI GGCC 3 cut(s) 3, 586, 1294
ApeKI GCWGC 4 cut(s) 308, 530, 944, 971
ApoI RAATTY 2 cut(s) 879, 1029
AsiGI ACCGGT 1 cut(s) 275
Asp700I GAANNNNTTC 2 cut(s) 215, 545
AspLEI GCGC 2 cut(s) 298, 926
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 668
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 186
BaeI ACNNNNGTAYC 2 cut(s) 563, 596
BalI TGGCCA 1 cut(s) 588
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 4 cut(s) 295, 517, 931, 958
BccI CCATC 8 cut(s) 71, 404, 500, 597, 620, 1024, 1070, 1307
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 4 cut(s) 326, 360, 468, 502
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 15, 51
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 2 cut(s) 103, 744
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 7 cut(s) 283, 309, 528, 531, 945, 972, 1344
BlsI GCNGC 7 cut(s) 284, 310, 529, 532, 946, 973, 1345
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 1 cut(s) 115
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 3 cut(s) 185, 253, 274
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 152, 392, 1192
BpiI GAAGAC 1 cut(s) 733
Bsa29I ATCGAT 1 cut(s) 1451
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 1193
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 724, 1077, 1078
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 1007, 1297
BseBI CCWGG 1 cut(s) 594
BseCI ATCGAT 1 cut(s) 1451
BseDI CCNNGG 1 cut(s) 1193
BseGI GGATG 3 cut(s) 589, 1183, 1279
BseLI CCNNNNNNNGG 4 cut(s) 31, 724, 1077, 1078
BseMII CTCAG 3 cut(s) 114, 204, 1358
BseNI ACTGG 2 cut(s) 1007, 1297
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 4 cut(s) 295, 517, 931, 958
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 516
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 5, 588, 1296
BshNI GGYRCC 1 cut(s) 183
BshTI ACCGGT 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 1451
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 732
BsiSI CCGG 2 cut(s) 72, 276
BslFI GGGAC 1 cut(s) 1087
BslI CCNNNNNNNGG 4 cut(s) 31, 724, 1077, 1078
BsmAI GTCTC 2 cut(s) 15, 51
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 1087
BsmI GAATGC 2 cut(s) 868, 1039
BsnI GGCC 3 cut(s) 5, 588, 1296
Bso31I GGTCTC 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 186, 732
Bsp1407I TGTACA 1 cut(s) 1132
Bsp143I GATC 4 cut(s) 612, 1156, 1370, 1452
BspACI CCGC 5 cut(s) 180, 282, 527, 947, 1343
BspANI GGCC 3 cut(s) 5, 588, 1296
BspCNI CTCAG 3 cut(s) 115, 203, 1359
BspDI ATCGAT 1 cut(s) 1451
BspLI GGNNCC 3 cut(s) 185, 253, 274
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 2 cut(s) 103, 744
BspQI GCTCTTC 1 cut(s) 1298
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 1132
BsrI ACTGG 2 cut(s) 1007, 1297
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 1193
BssMI GATC 4 cut(s) 612, 1156, 1370, 1452
BssT1I CCWWGG 1 cut(s) 1193
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 4 cut(s) 80, 103, 767, 1280
Bst6I CTCTTC 4 cut(s) 226, 233, 1298, 1438
BstAPI GCANNNNNTGC 2 cut(s) 380, 1189
BstAUI TGTACA 1 cut(s) 1132
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 5 cut(s) 123, 190, 474, 1116, 1367
BstF5I GGATG 3 cut(s) 589, 1183, 1279
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 298, 926
BstKTI GATC 4 cut(s) 615, 1159, 1373, 1455
BstMAI GTCTC 2 cut(s) 15, 51
BstMBI GATC 4 cut(s) 612, 1156, 1370, 1452
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 7 cut(s) 380, 527, 971, 1175, 1189, 1314, 1340
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 295, 517, 931, 958
BstV2I GAAGAC 1 cut(s) 733
BstXI CCANNNNNNTGG 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 1451
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 5, 588, 1296
BsuTUI ATCGAT 1 cut(s) 1451
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 589, 1183, 1279
BtsI GCAGTG 2 cut(s) 396, 1338
BtsIMutI CAGTG 7 cut(s) 396, 618, 678, 772, 1014, 1290, 1338
BveI ACCTGC 2 cut(s) 103, 744
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 2 cut(s) 298, 926
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 1451
Csp6I GTAC 1 cut(s) 1133
CspAI ACCGGT 1 cut(s) 275
CspCI CAANNNNNGTGG 2 cut(s) 922, 957
CviAII CATG 6 cut(s) 208, 344, 1073, 1211, 1318, 1354
CviQI GTAC 1 cut(s) 1133
DdeI CTNAG 5 cut(s) 123, 190, 474, 1116, 1367
DpnI GATC 4 cut(s) 614, 1158, 1372, 1454
DpnII GATC 4 cut(s) 612, 1156, 1370, 1452
DraI TTTAAA 1 cut(s) 1438
DriI GACNNNNNGTC 1 cut(s) 904
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 4 cut(s) 226, 233, 1298, 1438
Eam1105I GACNNNNNGTC 1 cut(s) 904
EarI CTCTTC 4 cut(s) 226, 233, 1298, 1438
Eco130I CCWWGG 1 cut(s) 1193
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 3 cut(s) 642, 870, 1441
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 1193
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 1193
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 6 cut(s) 211, 347, 1076, 1214, 1321, 1357
FaqI GGGAC 1 cut(s) 1087
FatI CATG 6 cut(s) 207, 343, 1072, 1210, 1317, 1353
FauI CCCGC 1 cut(s) 173
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 7 cut(s) 283, 309, 528, 531, 945, 972, 1344
FokI GGATG 3 cut(s) 576, 1170, 1286
Fsp4HI GCNGC 7 cut(s) 283, 309, 528, 531, 945, 972, 1344
GlaI GCGC 2 cut(s) 297, 925
GluI GCNGC 7 cut(s) 283, 309, 528, 531, 945, 972, 1344
GsaI CCCAGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 3 cut(s) 5, 588, 1296
HapII CCGG 2 cut(s) 72, 276
HhaI GCGC 2 cut(s) 298, 926
Hin1II CATG 6 cut(s) 211, 347, 1076, 1214, 1321, 1357
Hin6I GCGC 2 cut(s) 296, 924
HinP1I GCGC 2 cut(s) 296, 924
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 2 cut(s) 245, 465
HinfI GANTC 4 cut(s) 84, 431, 1096, 1205
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 2 cut(s) 72, 276
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 3 cut(s) 129, 334, 909
Hpy188I TCNGA 8 cut(s) 20, 148, 226, 505, 612, 811, 895, 1460
Hpy188III TCNNGA 6 cut(s) 28, 50, 88, 118, 1024, 1044
Hpy8I GTNNAC 3 cut(s) 129, 334, 909
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 4 cut(s) 80, 103, 767, 1280
HpyF10VI GCNNNNNNNGC 7 cut(s) 380, 527, 971, 1175, 1189, 1314, 1340
HpyF3I CTNAG 5 cut(s) 123, 190, 474, 1116, 1367
Hsp92II CATG 6 cut(s) 211, 347, 1076, 1214, 1321, 1357
HspAI GCGC 2 cut(s) 296, 924
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 4 cut(s) 612, 1156, 1370, 1452
LguI GCTCTTC 1 cut(s) 1298
LmnI GCTCC 3 cut(s) 74, 365, 727
Lsp1109I GCAGC 4 cut(s) 295, 517, 931, 958
LweI GCATC 3 cut(s) 152, 392, 1192
MaeIII GTNAC 2 cut(s) 824, 1286
MalI GATC 4 cut(s) 614, 1158, 1372, 1454
MboI GATC 4 cut(s) 612, 1156, 1370, 1452
MhlI GDGCHC 2 cut(s) 186, 732
MlsI TGGCCA 1 cut(s) 588
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 2 cut(s) 425, 1105
MnlI CCTC 8 cut(s) 16, 35, 197, 234, 265, 496, 650, 1351
Mox20I TGGCCA 1 cut(s) 588
Mph1103I ATGCAT 1 cut(s) 385
MroXI GAANNNNTTC 2 cut(s) 215, 545
MscI TGGCCA 1 cut(s) 588
MseI TTAA 3 cut(s) 333, 720, 1437
MslI CAYNNNNRTG 3 cut(s) 206, 348, 594
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 2 cut(s) 72, 276
MspR9I CCNGG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 868, 1039
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 7 cut(s) 380, 527, 971, 1175, 1189, 1314, 1340
NdeI CATATG 1 cut(s) 161
NdeII GATC 4 cut(s) 612, 1156, 1370, 1452
NlaIII CATG 6 cut(s) 211, 347, 1076, 1214, 1321, 1357
NlaIV GGNNCC 3 cut(s) 185, 253, 274
NmuCI GTSAC 1 cut(s) 1286
NsiI ATGCAT 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 1298
PctI GAATGC 2 cut(s) 868, 1039
PdmI GAANNNNTTC 2 cut(s) 215, 545
PfeI GAWTC 2 cut(s) 84, 1205
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 7 cut(s) 284, 310, 529, 532, 946, 973, 1345
PleI GAGTC 2 cut(s) 425, 1104
PpsI GAGTC 2 cut(s) 425, 1104
Psp6I CCWGG 1 cut(s) 592
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 185, 253, 274
PspPI GGNCC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 652
RsaI GTAC 1 cut(s) 1134
RsaNI GTAC 1 cut(s) 1133
RseI CAYNNNNRTG 3 cut(s) 206, 348, 594
SapI GCTCTTC 1 cut(s) 1298
SaqAI TTAA 3 cut(s) 333, 720, 1437
SatI GCNGC 7 cut(s) 283, 309, 528, 531, 945, 972, 1344
Sau3AI GATC 4 cut(s) 612, 1156, 1370, 1452
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 2 cut(s) 425, 1105
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 2 cut(s) 186, 732
SfaNI GCATC 3 cut(s) 152, 392, 1192
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 3 cut(s) 206, 348, 594
SsiI CCGC 5 cut(s) 180, 282, 527, 947, 1343
SspI AATATT 2 cut(s) 516, 939
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 1 cut(s) 1193
TaaI ACNGT 4 cut(s) 80, 103, 767, 1280
TaqI TCGA 3 cut(s) 82, 488, 1451
TatI WGTACW 1 cut(s) 1132
TauI GCSGC 3 cut(s) 285, 530, 1346
TfiI GAWTC 2 cut(s) 84, 1205
Tru1I TTAA 3 cut(s) 333, 720, 1437
Tru9I TTAA 3 cut(s) 333, 720, 1437
TscAI CASTG 7 cut(s) 403, 625, 678, 772, 1014, 1297, 1345
TseFI GTSAC 1 cut(s) 1286
TseI GCWGC 4 cut(s) 308, 530, 944, 971
Tsp45I GTSAC 1 cut(s) 1286
TspDTI ATGAA 3 cut(s) 224, 489, 1269
TspGWI ACGGA 2 cut(s) 33, 874
TspRI CASTG 7 cut(s) 403, 625, 678, 772, 1014, 1297, 1345
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 879, 1029
XmiI GTMKAC 1 cut(s) 908
XmnI GAANNNNTTC 2 cut(s) 215, 545
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.