Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003369.1

Orthogroup ID

OG0006682

Physical Location & Seq

Genomic Coordinates Reverse (-)

29536 .. 33448

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003369.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

atggccccgtcaaacatcagagacctcttgacggcgtttaatccgtcgctggacttgttcgccattacttccggcgacggtcgaatcaaggtacttgaaattacgaaacgggatgggaagataatagctactgcagctgcacaaatgaagatattgaatttgtctgaccacaaaaagatacagaagttttccggtcatcctggagctgttcgctgtatgatcttcactgagaatgggaagtacattctctcatctgcagttggtgaaaggtatattgcagtatggaatatagatggtgggaaaaagcagtcagcaagtgctgttctcgcaatggagcaccctgctgtgttccttgatagcaggtgcatagacagtggggaagttggtgatgcaggtctatatgtcttagcaatctcagaagttggcgtttgttatttttggtttggaaagaatgctgaagaattacggaatgccaagcctacaaaaatttcagtatcttctgaagacagtttgtctgaaactcataggggttcacctacaatatttgctgcaattttacaaggaattgccaaatcagcttccgggcagatatttgttgcttctggattaccagtgaagccatcatttcaaaaacttttggtgcattctggtactgacataaagttgagtagctcccgtgatggggttcttctaccaattagtcagtctcttgtcaaatccaagagaggccaagatgtacaaaatagagttgttgcattagatcgtgcaaatgcagaagatgccctacttccgattccaaagatctttgattcgcatgaaaaaaagaaaaagcatgaaaaattgcgctttgacaaagacgaagtaatggccgatttggaggacagcaggagtctctctggccctgtgaagaccaaagatggcacggtagaatttgaacttgacactggagcaatttgcatggaggaccggttgagatcattaggaatactcagtaaactagatgaccaaacaatcaaatccacactaaattctgcagcatttaagagtattgacattcagacaaatatgccacaaaagaagatgagggcagctgtactgtcaatggtacctagtgacacatacaagttattgggagttttggtggccatttggcaaacaaggtctagcagtggaaattatgtacttccatggatatacagcatattggtaaatcacagtcattatgtcatgtcagaagaacctgagacccaggtgcttagttccttgttcaaggtcaccaaatctagaaaggcagctattcagcctttattacaattatccggtcgtttgcagcttgtagtggcacagattgacaaggcaacaaacaccggaaatcaaattttattgcatgaggaccagaaggatgaaagtgaagatgaggatgaagatgtaaatgaaattcacttcagggaagaagatgatgactctgaaataagcagtgacgatgagcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

497

Amino Acids

54.65

Weight (kDa)

5.76

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11240
fragaria_vesca	FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810
malus_domestica	MD13G1161900.v1.1 MD16G1161700.v1.1
prunus_persica	Prupe.1G129200_v2.0.a1
pyrus_communis	pycom13g13800
rosa_chinensis	RchiOBHm_Chr4g0423831
rosa_laevigata	RLG00000007528
rosa_multiflora	Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365950
rosa_rugosa	Rorug04G0191100 Rorug04G0191200 Rorug04G0191200
rosa_samantha	Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300
rosa_wichuraiana	Rw4G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	351
Acc36I	ACCTGC	2 cut(s)	351, 383
Acc65I	GGTACC	1 cut(s)	1105
AccB1I	GGYRCC	1 cut(s)	1105
AcoI	YGGCCR	2 cut(s)	867, 1143
AcsI	RAATTY	6 cut(s)	157, 486, 929, 1027, 1377, 1437
AcuI	CTGAAG	3 cut(s)	477, 522, 1429
AfaI	GTAC	7 cut(s)	93, 242, 652, 738, 1095, 1107, 1182
AfiI	CCNNNNNNNGG	3 cut(s)	31, 681, 682
AgeI	ACCGGT	1 cut(s)	966
AgsI	TTSAA	5 cut(s)	98, 157, 629, 935, 1270
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	199, 1248
AluBI	AGCT	8 cut(s)	128, 137, 206, 578, 672, 1091, 1295, 1333
AluI	AGCT	8 cut(s)	128, 137, 206, 578, 672, 1091, 1295, 1333
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	4 cut(s)	15, 711, 896, 1238
AoxI	GGCC	5 cut(s)	3, 727, 867, 898, 1143
ApeKI	GCWGC	7 cut(s)	134, 137, 548, 1034, 1088, 1292, 1330
ApoI	RAATTY	6 cut(s)	157, 486, 929, 1027, 1377, 1437
AsiGI	ACCGGT	1 cut(s)	966
Asp718I	GGTACC	1 cut(s)	1105
AspLEI	GCGC	1 cut(s)	846
AspS9I	GGNCC	4 cut(s)	4, 899, 964, 1393
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	4 cut(s)	275, 398, 525, 1267
AvaII	GGWCC	2 cut(s)	964, 1393
BaeI	ACNNNNGTAYC	2 cut(s)	170, 203
BalI	TGGCCA	1 cut(s)	1145
BanI	GGYRCC	1 cut(s)	1105
BarI	GAAGNNNNNNTAC	2 cut(s)	768, 800
BbsI	GAAGAC	2 cut(s)	510, 914
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	7 cut(s)	124, 146, 535, 1046, 1100, 1304, 1342
BccI	CCATC	5 cut(s)	107, 287, 628, 674, 911
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	2 cut(s)	201, 1250
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	4 cut(s)	15, 711, 896, 1238
BfaI	CTAG	4 cut(s)	998, 1110, 1164, 1284
BfmI	CTRYAG	3 cut(s)	132, 255, 1032
BfuAI	ACCTGC	2 cut(s)	351, 383
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	7 cut(s)	135, 138, 549, 1035, 1089, 1293, 1331
BlsI	GCNGC	7 cut(s)	136, 139, 550, 1036, 1090, 1294, 1332
Bme1390I	CCNGG	3 cut(s)	201, 583, 1250
Bme18I	GGWCC	2 cut(s)	964, 1393
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	4 cut(s)	4, 899, 964, 1393
BmiI	GGNNCC	2 cut(s)	6, 1107
BmrFI	CCNGG	3 cut(s)	201, 583, 1250
BmsI	GCATC	2 cut(s)	379, 769
BpiI	GAAGAC	2 cut(s)	510, 914
BpmI	CTGGAG	2 cut(s)	222, 966
BpuMI	CCSGG	1 cut(s)	583
BsaI	GGTCTC	2 cut(s)	15, 1238
BsaJI	CCNNGG	2 cut(s)	1187, 1248
BsaWI	WCCGGW	4 cut(s)	191, 966, 1319, 1367
BsaXI	ACNNNNNCTCC	4 cut(s)	953, 983, 1125, 1155
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 681, 682
Bse118I	RCCGGY	1 cut(s)	966
Bse1I	ACTGG	2 cut(s)	611, 949
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	201, 1250
BseDI	CCNNGG	2 cut(s)	1187, 1248
BseGI	GGATG	4 cut(s)	118, 196, 1408, 1426
BseLI	CCNNNNNNNGG	3 cut(s)	31, 681, 682
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	219, 429, 1003, 1233
BseNI	ACTGG	2 cut(s)	611, 949
BseXI	GCAGC	7 cut(s)	124, 146, 535, 1046, 1100, 1304, 1342
BsgI	GTGCAG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	82, 1324
BshFI	GGCC	5 cut(s)	5, 729, 869, 900, 1145
BshNI	GGYRCC	1 cut(s)	1105
BshTI	ACCGGT	1 cut(s)	966
BsiEI	CGRYCG	2 cut(s)	82, 1324
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	6 cut(s)	72, 192, 582, 967, 1320, 1368
BslI	CCNNNNNNNGG	3 cut(s)	31, 681, 682
BsmAI	GTCTC	4 cut(s)	15, 711, 896, 1238
BsmI	GAATGC	3 cut(s)	457, 475, 643
BsnI	GGCC	5 cut(s)	5, 729, 869, 900, 1145
Bso31I	GGTCTC	2 cut(s)	15, 1238
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	4 cut(s)	219, 760, 801, 974
Bsp19I	CCATGG	1 cut(s)	1187
BspANI	GGCC	5 cut(s)	5, 729, 869, 900, 1145
BspCNI	CTCAG	4 cut(s)	220, 428, 1002, 1234
BspLI	GGNNCC	2 cut(s)	6, 1107
BspMAI	CTGCAG	3 cut(s)	136, 259, 1036
BspMI	ACCTGC	2 cut(s)	351, 383
BspT107I	GGYRCC	1 cut(s)	1105
BspTNI	GGTCTC	2 cut(s)	15, 1238
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	966
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	611, 949
BssAI	RCCGGY	1 cut(s)	966
BssECI	CCNNGG	2 cut(s)	1187, 1248
BssMI	GATC	4 cut(s)	219, 760, 801, 974
BssT1I	CCWWGG	1 cut(s)	1187
Bst2UI	CCWGG	2 cut(s)	201, 1250
Bst4CI	ACNGT	6 cut(s)	80, 374, 509, 925, 1098, 1217
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	736
BstDEI	CTNAG	6 cut(s)	228, 406, 415, 989, 1242, 1256
BstDSI	CCRYGG	1 cut(s)	1187
BstEII	GGTNACC	1 cut(s)	1273
BstF5I	GGATG	4 cut(s)	118, 196, 1408, 1426
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	4 cut(s)	222, 763, 804, 977
BstMAI	GTCTC	4 cut(s)	15, 711, 896, 1238
BstMBI	GATC	4 cut(s)	219, 760, 801, 974
BstMCI	CGRYCG	2 cut(s)	82, 1324
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 326, 575, 779
BstNI	CCWGG	2 cut(s)	201, 1250
BstPI	GGTNACC	1 cut(s)	1273
BstSCI	CCNGG	3 cut(s)	199, 581, 1248
BstSFI	CTRYAG	3 cut(s)	132, 255, 1032
BstV1I	GCAGC	7 cut(s)	124, 146, 535, 1046, 1100, 1304, 1342
BstV2I	GAAGAC	2 cut(s)	510, 914
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BsuRI	GGCC	5 cut(s)	5, 729, 869, 900, 1145
BtgI	CCRYGG	1 cut(s)	1187
BtsCI	GGATG	4 cut(s)	118, 196, 1408, 1426
BtsI	GCAGTG	2 cut(s)	1174, 1483
BtsIMutI	CAGTG	6 cut(s)	225, 379, 618, 942, 1174, 1483
BveI	ACCTGC	2 cut(s)	351, 383
CfoI	GCGC	1 cut(s)	846
Cfr10I	RCCGGY	1 cut(s)	966
Cfr13I	GGNCC	4 cut(s)	4, 899, 964, 1393
Csp6I	GTAC	7 cut(s)	92, 241, 651, 737, 1094, 1106, 1181
CspAI	ACCGGT	1 cut(s)	966
CviAII	CATG	6 cut(s)	815, 833, 958, 1188, 1228, 1388
CviQI	GTAC	7 cut(s)	92, 241, 651, 737, 1094, 1106, 1181
DdeI	CTNAG	6 cut(s)	228, 406, 415, 989, 1242, 1256
DpnI	GATC	4 cut(s)	221, 762, 803, 976
DpnII	GATC	4 cut(s)	219, 760, 801, 974
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	867, 1143
Eam1105I	GACNNNNNGTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	1187
Eco31I	GGTCTC	2 cut(s)	15, 1238
Eco47I	GGWCC	2 cut(s)	964, 1393
Eco57I	CTGAAG	3 cut(s)	477, 522, 1429
Eco91I	GGTNACC	1 cut(s)	1273
EcoO65I	GGTNACC	1 cut(s)	1273
EcoRII	CCWGG	2 cut(s)	199, 1248
EcoT14I	CCWWGG	1 cut(s)	1187
ErhI	CCWWGG	1 cut(s)	1187
FaeI	CATG	6 cut(s)	818, 836, 961, 1191, 1231, 1391
FatI	CATG	6 cut(s)	814, 832, 957, 1187, 1227, 1387
Fnu4HI	GCNGC	7 cut(s)	135, 138, 549, 1035, 1089, 1293, 1331
FokI	GGATG	4 cut(s)	125, 183, 1415, 1433
Fsp4HI	GCNGC	7 cut(s)	135, 138, 549, 1035, 1089, 1293, 1331
FspBI	CTAG	4 cut(s)	998, 1110, 1164, 1284
GlaI	GCGC	1 cut(s)	845
GluI	GCNGC	7 cut(s)	135, 138, 549, 1035, 1089, 1293, 1331
GsuI	CTGGAG	2 cut(s)	222, 966
HaeIII	GGCC	5 cut(s)	5, 729, 869, 900, 1145
HapII	CCGG	6 cut(s)	72, 192, 582, 967, 1320, 1368
HhaI	GCGC	1 cut(s)	846
Hin1II	CATG	6 cut(s)	818, 836, 961, 1191, 1231, 1391
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HinfI	GANTC	5 cut(s)	84, 793, 809, 889, 1463
HpaII	CCGG	6 cut(s)	72, 192, 582, 967, 1320, 1368
HphI	GGTGA	4 cut(s)	275, 398, 525, 1267
Hpy166II	GTNNAC	2 cut(s)	533, 995
Hpy188I	TCNGA	9 cut(s)	20, 166, 418, 502, 517, 792, 1059, 1234, 1468
Hpy188III	TCNNGA	3 cut(s)	28, 603, 1284
Hpy8I	GTNNAC	2 cut(s)	533, 995
Hpy99I	CGWCG	2 cut(s)	49, 80
HpyAV	CCTTC	1 cut(s)	1393
HpyCH4III	ACNGT	6 cut(s)	80, 374, 509, 925, 1098, 1217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 326, 575, 779
HpyF3I	CTNAG	6 cut(s)	228, 406, 415, 989, 1242, 1256
Hsp92II	CATG	6 cut(s)	818, 836, 961, 1191, 1231, 1391
HspAI	GCGC	1 cut(s)	844
KpnI	GGTACC	1 cut(s)	1109
Kzo9I	GATC	4 cut(s)	219, 760, 801, 974
LmnI	GCTCC	4 cut(s)	203, 334, 677, 947
Lsp1109I	GCAGC	7 cut(s)	124, 146, 535, 1046, 1100, 1304, 1342
LweI	GCATC	2 cut(s)	379, 769
MaeI	CTAG	4 cut(s)	998, 1110, 1164, 1284
MaeIII	GTNAC	3 cut(s)	1112, 1273, 1478
MalI	GATC	4 cut(s)	221, 762, 803, 976
MboI	GATC	4 cut(s)	219, 760, 801, 974
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	1145
MluNI	TGGCCA	1 cut(s)	1145
MlyI	GAGTC	2 cut(s)	898, 1457
MnlI	CCTC	7 cut(s)	35, 719, 871, 955, 1077, 1384, 1411
Mox20I	TGGCCA	1 cut(s)	1145
MscI	TGGCCA	1 cut(s)	1145
MseI	TTAA	2 cut(s)	39, 1041
Msp20I	TGGCCA	1 cut(s)	1145
MspA1I	CMGCKG	2 cut(s)	137, 1091
MspI	CCGG	6 cut(s)	72, 192, 582, 967, 1320, 1368
MspR9I	CCNGG	3 cut(s)	201, 583, 1250
Mva1269I	GAATGC	3 cut(s)	457, 475, 643
MvaI	CCWGG	2 cut(s)	201, 1250
MwoI	GCNNNNNNNGC	4 cut(s)	134, 326, 575, 779
NciI	CCSGG	1 cut(s)	583
NcoI	CCATGG	1 cut(s)	1187
NdeII	GATC	4 cut(s)	219, 760, 801, 974
NlaIII	CATG	6 cut(s)	818, 836, 961, 1191, 1231, 1391
NlaIV	GGNNCC	2 cut(s)	6, 1107
NmuCI	GTSAC	3 cut(s)	1112, 1273, 1478
PaqCI	CACCTGC	1 cut(s)	351
PctI	GAATGC	3 cut(s)	457, 475, 643
PfeI	GAWTC	3 cut(s)	84, 793, 809
PfoI	TCCNGGA	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	966
PkrI	GCNGC	7 cut(s)	136, 139, 550, 1036, 1090, 1294, 1332
PleI	GAGTC	2 cut(s)	897, 1457
PpsI	GAGTC	2 cut(s)	897, 1457
Psp6I	CCWGG	2 cut(s)	199, 1248
PspEI	GGTNACC	1 cut(s)	1273
PspGI	CCWGG	2 cut(s)	199, 1248
PspN4I	GGNNCC	2 cut(s)	6, 1107
PspPI	GGNCC	4 cut(s)	4, 899, 964, 1393
PstI	CTGCAG	3 cut(s)	136, 259, 1036
PsuI	RGATCY	1 cut(s)	801
PvuII	CAGCTG	2 cut(s)	137, 1091
RsaI	GTAC	7 cut(s)	93, 242, 652, 738, 1095, 1107, 1182
RsaNI	GTAC	7 cut(s)	92, 241, 651, 737, 1094, 1106, 1181
SaqAI	TTAA	2 cut(s)	39, 1041
SatI	GCNGC	7 cut(s)	135, 138, 549, 1035, 1089, 1293, 1331
Sau3AI	GATC	4 cut(s)	219, 760, 801, 974
Sau96I	GGNCC	4 cut(s)	4, 899, 964, 1393
SchI	GAGTC	2 cut(s)	898, 1457
ScrFI	CCNGG	3 cut(s)	201, 583, 1250
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	2 cut(s)	379, 769
SfcI	CTRYAG	3 cut(s)	132, 255, 1032
SinI	GGWCC	2 cut(s)	964, 1393
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	4 cut(s)	998, 1110, 1164, 1284
StyD4I	CCNGG	3 cut(s)	199, 581, 1248
StyI	CCWWGG	1 cut(s)	1187
TaaI	ACNGT	6 cut(s)	80, 374, 509, 925, 1098, 1217
TaqI	TCGA	1 cut(s)	82
TatI	WGTACW	4 cut(s)	240, 736, 1093, 1180
TfiI	GAWTC	3 cut(s)	84, 793, 809
Tru1I	TTAA	2 cut(s)	39, 1041
Tru9I	TTAA	2 cut(s)	39, 1041
TscAI	CASTG	6 cut(s)	232, 379, 618, 949, 1174, 1483
TseFI	GTSAC	3 cut(s)	1112, 1273, 1478
TseI	GCWGC	7 cut(s)	134, 137, 548, 1034, 1088, 1292, 1330
Tsp45I	GTSAC	3 cut(s)	1112, 1273, 1478
TspDTI	ATGAA	6 cut(s)	161, 831, 849, 1419, 1437, 1449
TspGWI	ACGGA	2 cut(s)	33, 481
TspRI	CASTG	6 cut(s)	232, 379, 618, 949, 1174, 1483
VpaK11BI	GGWCC	2 cut(s)	964, 1393
XapI	RAATTY	6 cut(s)	157, 486, 929, 1027, 1377, 1437
XbaI	TCTAGA	1 cut(s)	1283
XspI	CTAG	4 cut(s)	998, 1110, 1164, 1284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.