Rh4CG264000

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
51863583 .. 51872790
9208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG264000.1

Sequence Viewer

Length: 1476 bp
ATGATCTTCACTGAGAATGGGAAGTACATTCTCTCATCTGCAGTTGGTGAAAGGTATATTGCAGTATGGAATATAGATGGTGGGAAAAAGCAGTCAGCAAGTGCTGTTCTCGCAATGGAGCACCCTGCTGTGTTCCTTGATAGCAGGTGCATAGACAGTGGGGAAGTTGGTGATGCAGGTCTATATGTCTTAGCAATCTCAGAAGTTGGCGTTTGTTATTTTTGGTTTGGAAAGAATGCTGAAGAATTATGGAATGCCAAGCCTACAAAAATTTCAGTATCTTCTGAAGACAGTTTGTCTGAAACTCATAGGGGTTCACCTGCAATATTTGCTGCAATTTTACAAGGAATTGCCAAATCAGCTTCTGGGCAGATATTTGTTGCTTCTGGATTACCAGTGAAGCCATCATTTCAAAAACTTTTGGTGCATTCTGGTACTGACATAAAGTTGAGTAGCTCCCGTGATGGGGTTCTTCTACCAATTAGTCAGTCTCTTGTCAAATCCAAGAGAGGCCAAGATGTACAAAATAGAGTTGTTGCATTAGATCGTGCAAATGCAGAAGATGCCCTACTTCTGATTCCAAAGATCTTTGATTCGCATGAAAAAAAGAAAAAGCATGAAAAATTGCGCTTTGACAAAGATGAAGTAATGGCCGATTTGGAGGACAGCAGGAGTCACTCTGGCCCTGTGAAGACCAAAGATGGCACGGTAGAATTTGAACCTGACACTGGAGCAATTTGCATGGAGGACCGGTTGAGATCATTAGGAATACTCAGTAAACTAGATGACCAAACAATCAAATCCACACTAAATTCTGCAGCATTTAAGAGTATTGACATTCAGACAAATATGCCACAAAAGAAGATGAGGGCAGCTGTACTGTCAATGGTACCTAGTGACACATACAAGTTATTGGGAGTTTTGGTGGCCATTTGGCAAACAAGGTCTAGCAGTGGAAATTATGTACTTCCATGGATATACAGCATATTGGTAAATCACAGTCATTATGTCATGTCAGAAGAACCTGAGACCCAGGTGCTTAGTTCCTTGTTCAAGGTCACCAAATCTAGAAAGGCAGCTATTCAGCCTTTATTACAATTATCTGGTCGTTTGCAGCTTGTAGTGGCACAGGTGGGTGGTGGTATATGGTATGAACTTCCCCAACTTCTCTTGGCCTGTGGTGGTACACCGGATGTTGTTGGCCTAGATTGGTCTCAGCAGCCACAGGTGTTGGTAGTGCCTCTGGTTGTGGATGTTCCGGTAGTGGCGGATCCTTTGGTGGCTCGGCTGGTGGGGCAGCTTCAGGAGGTGGAGCTGGTTCGGCTGGTGGATGAGGTGATTCTGTTGGAGGAGGGTTTGCTGCATCGGGAGGTGGTGCTGCGGCACCTTCGGGGGGTTGTTCTGCTGGAGGAGAAGCAGGCTCTGTTGGTTGTTCTATATGGGAACATATGGTCGCAATCTTCCTCGTCTTTTTAA

Protein Analysis

491

Amino Acids

53.79

Weight (kDa)

6.11

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 283 - 374 2.8e-09 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 135, 328
Acc36I ACCTGC 3 cut(s) 135, 167, 328
Acc65I GGTACC 1 cut(s) 889
AccB1I GGYRCC 2 cut(s) 889, 1383
AciI CCGC 2 cut(s) 1268, 1381
AclWI GGATC 2 cut(s) 1265, 1278
AcoI YGGCCR 2 cut(s) 651, 927
AcsI RAATTY 3 cut(s) 270, 713, 811
AcuI CTGAAG 3 cut(s) 261, 306, 1286
AfaI GTAC 7 cut(s) 26, 436, 522, 879, 891, 966, 1186
AfiI CCNNNNNNNGG 4 cut(s) 465, 466, 728, 1393
AgeI ACCGGT 1 cut(s) 750
AgsI TTSAA 3 cut(s) 413, 719, 1054
AhdI GACNNNNNGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 1032
AluBI AGCT 7 cut(s) 362, 456, 875, 1079, 1117, 1300, 1315
AluI AGCT 7 cut(s) 362, 456, 875, 1079, 1117, 1300, 1315
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 3 cut(s) 495, 1022, 1218
AlwI GGATC 2 cut(s) 1265, 1278
AlwNI CAGNNNCTG 2 cut(s) 365, 1423
AoxI GGCC 6 cut(s) 511, 651, 682, 927, 1173, 1201
ApeKI GCWGC 9 cut(s) 332, 818, 872, 1076, 1114, 1219, 1297, 1360, 1378
ApoI RAATTY 3 cut(s) 270, 713, 811
AsiGI ACCGGT 1 cut(s) 750
Asp718I GGTACC 1 cut(s) 889
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 2 cut(s) 683, 748
AsuHPI GGTGA 5 cut(s) 59, 182, 309, 1051, 1348
AvaII GGWCC 1 cut(s) 748
BalI TGGCCA 1 cut(s) 929
BamHI GGATCC 1 cut(s) 1270
BanI GGYRCC 2 cut(s) 889, 1383
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
BbsI GAAGAC 2 cut(s) 294, 698
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 9 cut(s) 319, 830, 884, 1088, 1126, 1231, 1309, 1347, 1365
BccI CCATC 4 cut(s) 71, 412, 458, 695
BciT130I CCWGG 1 cut(s) 1034
BcoDI GTCTC 3 cut(s) 495, 1022, 1218
BfaI CTAG 5 cut(s) 782, 894, 948, 1068, 1205
BfmI CTRYAG 2 cut(s) 39, 816
BfuAI ACCTGC 3 cut(s) 135, 167, 328
BglII AGATCT 1 cut(s) 585
Bme1390I CCNGG 1 cut(s) 1034
Bme18I GGWCC 1 cut(s) 748
BmeRI GACNNNNNGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 683, 748
BmiI GGNNCC 3 cut(s) 891, 1272, 1385
BmrFI CCNGG 1 cut(s) 1034
BmsI GCATC 3 cut(s) 163, 553, 1372
BpiI GAAGAC 2 cut(s) 294, 698
BpmI CTGGAG 2 cut(s) 750, 1427
BsaI GGTCTC 2 cut(s) 1022, 1218
BsaJI CCNNGG 2 cut(s) 971, 1032
BsaWI WCCGGW 3 cut(s) 750, 1189, 1258
BsaXI ACNNNNNCTCC 4 cut(s) 737, 767, 909, 939
Bsc4I CCNNNNNNNGG 4 cut(s) 465, 466, 728, 1393
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 2 cut(s) 395, 733
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 1034
BseDI CCNNGG 2 cut(s) 971, 1032
BseGI GGATG 3 cut(s) 1198, 1258, 1336
BseLI CCNNNNNNNGG 4 cut(s) 465, 466, 728, 1393
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 4 cut(s) 213, 787, 1017, 1229
BseNI ACTGG 2 cut(s) 395, 733
BseRI GAGGAG 2 cut(s) 1364, 1424
BseXI GCAGC 9 cut(s) 319, 830, 884, 1088, 1126, 1231, 1309, 1347, 1365
BshFI GGCC 6 cut(s) 513, 653, 684, 929, 1175, 1203
BshNI GGYRCC 2 cut(s) 889, 1383
BshTI ACCGGT 1 cut(s) 750
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 3 cut(s) 751, 1190, 1259
BslI CCNNNNNNNGG 4 cut(s) 465, 466, 728, 1393
BsmAI GTCTC 3 cut(s) 495, 1022, 1218
BsmI GAATGC 3 cut(s) 241, 259, 427
BsnI GGCC 6 cut(s) 513, 653, 684, 929, 1175, 1203
Bso31I GGTCTC 2 cut(s) 1022, 1218
Bsp1286I GDGCHC 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 5 cut(s) 3, 544, 585, 758, 1270
Bsp19I CCATGG 1 cut(s) 971
BspACI CCGC 2 cut(s) 1268, 1381
BspANI GGCC 6 cut(s) 513, 653, 684, 929, 1175, 1203
BspCNI CTCAG 5 cut(s) 4, 212, 786, 1018, 1228
BspLI GGNNCC 3 cut(s) 891, 1272, 1385
BspMAI CTGCAG 2 cut(s) 43, 820
BspMI ACCTGC 3 cut(s) 135, 167, 328
BspPI GGATC 2 cut(s) 1265, 1278
BspT107I GGYRCC 2 cut(s) 889, 1383
BspTNI GGTCTC 2 cut(s) 1022, 1218
BsrDI GCAATG 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 750
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 2 cut(s) 395, 733
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 2 cut(s) 971, 1032
BssMI GATC 5 cut(s) 3, 544, 585, 758, 1270
BssT1I CCWWGG 1 cut(s) 971
Bst2UI CCWGG 1 cut(s) 1034
Bst4CI ACNGT 5 cut(s) 158, 293, 709, 882, 1001
BstAPI GCANNNNNTGC 2 cut(s) 329, 563
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 1419
BstDEI CTNAG 7 cut(s) 12, 190, 199, 773, 1026, 1040, 1215
BstDSI CCRYGG 1 cut(s) 971
BstEII GGTNACC 1 cut(s) 1057
BstF5I GGATG 3 cut(s) 1198, 1258, 1336
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 5 cut(s) 6, 547, 588, 761, 1273
BstMAI GTCTC 3 cut(s) 495, 1022, 1218
BstMBI GATC 5 cut(s) 3, 544, 585, 758, 1270
BstMWI GCNNNNNNNGC 6 cut(s) 110, 329, 359, 563, 1294, 1321
BstNI CCWGG 1 cut(s) 1034
BstPI GGTNACC 1 cut(s) 1057
BstSCI CCNGG 1 cut(s) 1032
BstSFI CTRYAG 2 cut(s) 39, 816
BstV1I GCAGC 9 cut(s) 319, 830, 884, 1088, 1126, 1231, 1309, 1347, 1365
BstV2I GAAGAC 2 cut(s) 294, 698
BstX2I RGATCY 2 cut(s) 585, 1270
BstYI RGATCY 2 cut(s) 585, 1270
BsuRI GGCC 6 cut(s) 513, 653, 684, 929, 1175, 1203
BtgI CCRYGG 1 cut(s) 971
BtsCI GGATG 3 cut(s) 1198, 1258, 1336
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 5 cut(s) 9, 163, 402, 726, 958
BveI ACCTGC 3 cut(s) 135, 167, 328
Cac8I GCNNGC 1 cut(s) 1419
CaiI CAGNNNCTG 2 cut(s) 365, 1423
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 2 cut(s) 683, 748
Csp6I GTAC 7 cut(s) 25, 435, 521, 878, 890, 965, 1185
CspAI ACCGGT 1 cut(s) 750
CspCI CAANNNNNGTGG 2 cut(s) 1212, 1247
CviAII CATG 5 cut(s) 599, 617, 742, 972, 1012
CviQI GTAC 7 cut(s) 25, 435, 521, 878, 890, 965, 1185
DdeI CTNAG 7 cut(s) 12, 190, 199, 773, 1026, 1040, 1215
DpnI GATC 5 cut(s) 5, 546, 587, 760, 1272
DpnII GATC 5 cut(s) 3, 544, 585, 758, 1270
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 2 cut(s) 651, 927
Eam1105I GACNNNNNGTC 1 cut(s) 295
EciI GGCGGA 1 cut(s) 1283
Eco130I CCWWGG 1 cut(s) 971
Eco31I GGTCTC 2 cut(s) 1022, 1218
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 3 cut(s) 261, 306, 1286
Eco91I GGTNACC 1 cut(s) 1057
EcoO65I GGTNACC 1 cut(s) 1057
EcoRII CCWGG 1 cut(s) 1032
EcoT14I CCWWGG 1 cut(s) 971
ErhI CCWWGG 1 cut(s) 971
FaeI CATG 5 cut(s) 602, 620, 745, 975, 1015
FatI CATG 5 cut(s) 598, 616, 741, 971, 1011
FauNDI CATATG 1 cut(s) 1448
FokI GGATG 3 cut(s) 1205, 1265, 1343
FspBI CTAG 5 cut(s) 782, 894, 948, 1068, 1205
GlaI GCGC 1 cut(s) 629
GsuI CTGGAG 2 cut(s) 750, 1427
HaeIII GGCC 6 cut(s) 513, 653, 684, 929, 1175, 1203
HapII CCGG 3 cut(s) 751, 1190, 1259
HhaI GCGC 1 cut(s) 630
Hin1II CATG 5 cut(s) 602, 620, 745, 975, 1015
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 4 cut(s) 577, 593, 673, 1339
HpaII CCGG 3 cut(s) 751, 1190, 1259
HphI GGTGA 5 cut(s) 59, 182, 309, 1051, 1348
Hpy166II GTNNAC 3 cut(s) 317, 779, 1187
Hpy188I TCNGA 6 cut(s) 202, 286, 301, 576, 843, 1018
Hpy188III TCNNGA 4 cut(s) 387, 1068, 1304, 1367
Hpy8I GTNNAC 3 cut(s) 317, 779, 1187
HpyAV CCTTC 1 cut(s) 1397
HpyCH4III ACNGT 5 cut(s) 158, 293, 709, 882, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 329, 359, 563, 1294, 1321
HpyF3I CTNAG 7 cut(s) 12, 190, 199, 773, 1026, 1040, 1215
Hsp92II CATG 5 cut(s) 602, 620, 745, 975, 1015
HspAI GCGC 1 cut(s) 628
KpnI GGTACC 1 cut(s) 893
Kzo9I GATC 5 cut(s) 3, 544, 585, 758, 1270
LmnI GCTCC 4 cut(s) 118, 461, 731, 1312
Lsp1109I GCAGC 9 cut(s) 319, 830, 884, 1088, 1126, 1231, 1309, 1347, 1365
LweI GCATC 3 cut(s) 163, 553, 1372
MaeI CTAG 5 cut(s) 782, 894, 948, 1068, 1205
MaeIII GTNAC 3 cut(s) 674, 896, 1057
MalI GATC 5 cut(s) 5, 546, 587, 760, 1272
MboI GATC 5 cut(s) 3, 544, 585, 758, 1270
MboII GAAGA 9 cut(s) 254, 273, 299, 464, 572, 703, 874, 1031, 1452
MflI RGATCY 2 cut(s) 585, 1270
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 929
MluNI TGGCCA 1 cut(s) 929
MlyI GAGTC 1 cut(s) 682
MmeI TCCRAC 1 cut(s) 1326
Mox20I TGGCCA 1 cut(s) 929
MscI TGGCCA 1 cut(s) 929
MseI TTAA 2 cut(s) 825, 1474
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 3 cut(s) 751, 1190, 1259
MspR9I CCNGG 1 cut(s) 1034
Mva1269I GAATGC 3 cut(s) 241, 259, 427
MvaI CCWGG 1 cut(s) 1034
MwoI GCNNNNNNNGC 6 cut(s) 110, 329, 359, 563, 1294, 1321
NcoI CCATGG 1 cut(s) 971
NdeI CATATG 1 cut(s) 1448
NdeII GATC 5 cut(s) 3, 544, 585, 758, 1270
NlaIII CATG 5 cut(s) 602, 620, 745, 975, 1015
NlaIV GGNNCC 3 cut(s) 891, 1272, 1385
NmeAIII GCCGAG 1 cut(s) 1264
NmuCI GTSAC 3 cut(s) 674, 896, 1057
PaqCI CACCTGC 2 cut(s) 135, 328
PctI GAATGC 3 cut(s) 241, 259, 427
PfeI GAWTC 3 cut(s) 577, 593, 1339
PinAI ACCGGT 1 cut(s) 750
PleI GAGTC 1 cut(s) 681
PpsI GAGTC 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 1032
PspEI GGTNACC 1 cut(s) 1057
PspGI CCWGG 1 cut(s) 1032
PspN4I GGNNCC 3 cut(s) 891, 1272, 1385
PspPI GGNCC 2 cut(s) 683, 748
PstI CTGCAG 2 cut(s) 43, 820
PstNI CAGNNNCTG 2 cut(s) 365, 1423
PsuI RGATCY 2 cut(s) 585, 1270
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 7 cut(s) 26, 436, 522, 879, 891, 966, 1186
RsaNI GTAC 7 cut(s) 25, 435, 521, 878, 890, 965, 1185
SaqAI TTAA 2 cut(s) 825, 1474
Sau3AI GATC 5 cut(s) 3, 544, 585, 758, 1270
Sau96I GGNCC 2 cut(s) 683, 748
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 1 cut(s) 1034
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 3 cut(s) 163, 553, 1372
SfcI CTRYAG 2 cut(s) 39, 816
SinI GGWCC 1 cut(s) 748
SsiI CCGC 2 cut(s) 1268, 1381
SspI AATATT 1 cut(s) 327
SspMI CTAG 5 cut(s) 782, 894, 948, 1068, 1205
StyD4I CCNGG 1 cut(s) 1032
StyI CCWWGG 1 cut(s) 971
TaaI ACNGT 5 cut(s) 158, 293, 709, 882, 1001
TatI WGTACW 4 cut(s) 24, 520, 877, 964
TauI GCSGC 1 cut(s) 1384
TfiI GAWTC 3 cut(s) 577, 593, 1339
Tru1I TTAA 2 cut(s) 825, 1474
Tru9I TTAA 2 cut(s) 825, 1474
TscAI CASTG 5 cut(s) 16, 163, 402, 733, 958
TseFI GTSAC 3 cut(s) 674, 896, 1057
TseI GCWGC 9 cut(s) 332, 818, 872, 1076, 1114, 1219, 1297, 1360, 1378
Tsp45I GTSAC 3 cut(s) 674, 896, 1057
TspDTI ATGAA 4 cut(s) 615, 633, 657, 1167
TspRI CASTG 5 cut(s) 16, 163, 402, 733, 958
VpaK11BI GGWCC 1 cut(s) 748
XapI RAATTY 3 cut(s) 270, 713, 811
XbaI TCTAGA 1 cut(s) 1067
XspI CTAG 5 cut(s) 782, 894, 948, 1068, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.