Rorug04G0191100

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
33214387 .. 33359663
145277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0191100.1

Sequence Viewer

Length: 1032 bp
ATGGCGGGCGTGAGGAGGATCAAGCTCGGGTCACAGGGCCTGGAGGTCTCAGCTCAAGGACTCGGCTGCATGGGCATGTCCTCCTTCTATGGGCCCCCGAAGCCCGAAGCCGACATGATCAAGCTCATACACCACGCCGTCGACTCCGGCGTCACCTTCCTCGACACCTCCGACATCTACGGTCCCCACACCAACGAAATTCTCCTCGGCAAAGCTTTGAGTGGAGGGGTGAGAGACAAGGTTGAATTGGCCACCAAATTCGGTGCCAGGTTTGCGGACAACAAAATGGAGATTCGAGGCGAGCCGGCATATGTGAGAGCTTCTTGTGAAGGAAGCTTGAAACGACTTGGTGTAGATTCTATTGATCTCTATTATCAGCATAGGATTGACACCCGTGTCCCCATTGAAGTCACGGTGGGGGAGTTCAAGAAGCTAATTGAAGAGGGTAAAATAAAGTACATCGGTCTGTCTGAGGCGTCAGCTTCAACAATAAGAAGAGCCCATGCTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTAGAGGAAGAAATAATCCCTACTTGTCGGGAACTTGGCATTGGCATTGTTGCATACAGTCCTCTAGGAAGAGGATTCTTATCATCGGGGGCAAATTTCATCGAAAATCTTCCCAATGATGATGCTCGAAAGAATATGCCCAGGTTCCAAGCTGAAAACCTAGAGCATAATAAAACAATATTTGAGCGAGTAAGTGATCTTGCAGCAAGGAAGGGTTGCACCCCATCTCAACTAGCATTGGCCTGGGTTCATCACCAAGGAAATGATGTGTGCCCTATACCCGGAACCACCAAGATTGAGAATTTTAACCAGAACATTAAGGCTCTGTCTGTGAAACTGACACCAGAAGAAATGGCCGAGCTTGAATCTTTCGCTTCCGCAGATGCTGTTAAGGGCGACAGATATCCGACTGAATGCAACAGTACTTGGATGAACTCTGAAACTCCACCACTGTCTTCATGGAAAGCCACATAA

Protein Analysis

343

Amino Acids

37.72

Weight (kDa)

6.03

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 310 2e-73 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 395
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 141
AciI CCGC 3 cut(s) 5, 275, 936
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 2 cut(s) 249, 912
AcsI RAATTY 4 cut(s) 198, 257, 652, 859
AcyI GRCGYC 2 cut(s) 150, 476
AfaI GTAC 2 cut(s) 458, 982
AfiI CCNNNNNNNGG 2 cut(s) 90, 839
AgsI TTSAA 7 cut(s) 245, 340, 407, 427, 440, 486, 923
AjnI CCWGG 4 cut(s) 39, 266, 698, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
Alw26I GTCTC 2 cut(s) 52, 228
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 2 cut(s) 40, 944
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 5 cut(s) 37, 92, 249, 798, 912
ApaI GGGCCC 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 66, 529, 761
ApoI RAATTY 4 cut(s) 198, 257, 652, 859
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 5 cut(s) 37, 92, 93, 182, 540
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 3 cut(s) 145, 241, 803
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 182, 540
BaeGI GKGCMC 2 cut(s) 96, 833
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 96, 502
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 3 cut(s) 53, 541, 773
BccI CCATC 1 cut(s) 790
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 4 cut(s) 41, 268, 700, 802
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 2 cut(s) 52, 228
BfaI CTAG 3 cut(s) 623, 719, 791
BisI GCNGC 3 cut(s) 67, 530, 762
BlsI GCNGC 3 cut(s) 68, 531, 763
BmcAI AGTACT 1 cut(s) 982
Bme1390I CCNGG 5 cut(s) 41, 268, 700, 802, 840
Bme18I GGWCC 2 cut(s) 182, 540
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 5 cut(s) 37, 92, 93, 182, 540
BmiI GGNNCC 6 cut(s) 94, 95, 184, 265, 704, 844
BmrFI CCNGG 5 cut(s) 41, 268, 700, 802, 840
BmsI GCATC 2 cut(s) 670, 931
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 2 cut(s) 62, 554
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 840
BsaBI GATNNNNATC 1 cut(s) 637
BsaHI GRCGYC 2 cut(s) 150, 476
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 4 cut(s) 205, 698, 801, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 839
Bse118I RCCGGY 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 4 cut(s) 41, 268, 700, 802
BseDI CCNNGG 4 cut(s) 205, 698, 801, 814
BseGI GGATG 2 cut(s) 511, 993
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 90, 839
BseMII CTCAG 2 cut(s) 63, 462
BseRI GAGGAG 2 cut(s) 28, 194
BseSI GKGCMC 2 cut(s) 96, 833
BseXI GCAGC 3 cut(s) 53, 541, 773
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 5 cut(s) 39, 94, 251, 800, 914
BshNI GGYRCC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 147, 305, 840
BslFI GGGAC 2 cut(s) 168, 383
BslI CCNNNNNNNGG 2 cut(s) 90, 839
BsmAI GTCTC 2 cut(s) 52, 228
BsmFI GGGAC 2 cut(s) 168, 383
BsmI GAATGC 1 cut(s) 977
BsnI GGCC 5 cut(s) 39, 94, 251, 800, 914
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 26
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 96, 502, 833
Bsp143I GATC 4 cut(s) 18, 117, 364, 754
BspACI CCGC 3 cut(s) 5, 275, 936
BspANI GGCC 5 cut(s) 39, 94, 251, 800, 914
BspCNI CTCAG 2 cut(s) 62, 463
BspLI GGNNCC 6 cut(s) 94, 95, 184, 265, 704, 844
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 205, 698, 801, 814
BssMI GATC 4 cut(s) 18, 117, 364, 754
BssNI GRCGYC 2 cut(s) 150, 476
BssT1I CCWWGG 1 cut(s) 814
Bst2UI CCWGG 4 cut(s) 41, 268, 700, 802
Bst4CI ACNGT 5 cut(s) 182, 415, 617, 980, 1011
Bst6I CTCTTC 3 cut(s) 435, 490, 622
BstACI GRCGYC 2 cut(s) 150, 476
BstC8I GCNNGC 3 cut(s) 7, 302, 306
BstDEI CTNAG 2 cut(s) 49, 471
BstF5I GGATG 2 cut(s) 511, 993
BstKTI GATC 4 cut(s) 21, 120, 367, 757
BstMAI GTCTC 2 cut(s) 52, 228
BstMBI GATC 4 cut(s) 18, 117, 364, 754
BstMWI GCNNNNNNNGC 3 cut(s) 72, 100, 272
BstNI CCWGG 4 cut(s) 41, 268, 700, 802
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 39, 266, 698, 800, 838
BstSLI GKGCMC 2 cut(s) 96, 833
BstV1I GCAGC 3 cut(s) 53, 541, 773
BstV2I GAAGAC 1 cut(s) 1005
BsuRI GGCC 5 cut(s) 39, 94, 251, 800, 914
BtsCI GGATG 2 cut(s) 511, 993
BtsIMutI CAGTG 1 cut(s) 1007
Cac8I GCNNGC 3 cut(s) 7, 302, 306
CaiI CAGNNNCTG 2 cut(s) 40, 944
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 5 cut(s) 37, 92, 93, 182, 540
CseI GACGC 2 cut(s) 139, 465
Csp6I GTAC 2 cut(s) 457, 981
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 5 cut(s) 70, 76, 115, 503, 1017
CviQI GTAC 2 cut(s) 457, 981
DdeI CTNAG 2 cut(s) 49, 471
DpnI GATC 4 cut(s) 20, 119, 366, 756
DpnII GATC 4 cut(s) 18, 117, 364, 754
DrdI GACNNNNNNGTC 2 cut(s) 149, 395
DseDI GACNNNNNNGTC 2 cut(s) 149, 395
EaeI YGGCCR 2 cut(s) 249, 912
Eam1104I CTCTTC 3 cut(s) 435, 490, 622
EarI CTCTTC 3 cut(s) 435, 490, 622
Eco130I CCWWGG 1 cut(s) 814
Eco24I GRGCYC 2 cut(s) 96, 502
Eco31I GGTCTC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 182, 540
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 37, 93
EcoRII CCWGG 4 cut(s) 39, 266, 698, 800
EcoRV GATATC 1 cut(s) 962
EcoT14I CCWWGG 1 cut(s) 814
EcoT38I GRGCYC 2 cut(s) 96, 502
ErhI CCWWGG 1 cut(s) 814
FaeI CATG 5 cut(s) 73, 79, 118, 506, 1020
FaqI GGGAC 2 cut(s) 168, 383
FatI CATG 5 cut(s) 69, 75, 114, 502, 1016
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 117
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 67, 530, 762
FokI GGATG 2 cut(s) 498, 1000
FriOI GRGCYC 2 cut(s) 96, 502
Fsp4HI GCNGC 3 cut(s) 67, 530, 762
FspBI CTAG 3 cut(s) 623, 719, 791
GluI GCNGC 3 cut(s) 67, 530, 762
GsuI CTGGAG 2 cut(s) 62, 554
HaeIII GGCC 5 cut(s) 39, 94, 251, 800, 914
HapII CCGG 3 cut(s) 147, 305, 840
HgaI GACGC 2 cut(s) 139, 465
Hin1I GRCGYC 2 cut(s) 150, 476
Hin1II CATG 5 cut(s) 73, 79, 118, 506, 1020
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 2 cut(s) 213, 334
HinfI GANTC 6 cut(s) 60, 143, 292, 356, 633, 923
HpaII CCGG 3 cut(s) 147, 305, 840
HphI GGTGA 3 cut(s) 145, 241, 803
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 172, 472, 966, 997
Hpy188III TCNNGA 3 cut(s) 427, 552, 587
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 94, 166, 323, 763
HpyCH4III ACNGT 5 cut(s) 182, 415, 617, 980, 1011
HpyCH4V TGCA 6 cut(s) 69, 529, 611, 761, 777, 975
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 100, 272
HpyF3I CTNAG 2 cut(s) 49, 471
Hsp92I GRCGYC 2 cut(s) 150, 476
Hsp92II CATG 5 cut(s) 73, 79, 118, 506, 1020
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 4 cut(s) 18, 117, 364, 754
LguI GCTCTTC 1 cut(s) 490
Lsp1109I GCAGC 3 cut(s) 53, 541, 773
LweI GCATC 2 cut(s) 670, 931
MaeI CTAG 3 cut(s) 623, 719, 791
MaeIII GTNAC 3 cut(s) 30, 151, 409
MalI GATC 4 cut(s) 20, 119, 366, 756
MboI GATC 4 cut(s) 18, 117, 364, 754
MboII GAAGA 7 cut(s) 452, 507, 578, 639, 659, 917, 1005
MhlI GDGCHC 3 cut(s) 96, 502, 833
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 6 cut(s) 198, 245, 257, 435, 652, 859
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 2 cut(s) 54, 137
MmeI TCCRAC 2 cut(s) 195, 989
Mox20I TGGCCA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 864, 876, 948
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 3 cut(s) 147, 305, 840
MspR9I CCNGG 5 cut(s) 41, 268, 700, 802, 840
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 4 cut(s) 41, 268, 700, 802
MwoI GCNNNNNNNGC 3 cut(s) 72, 100, 272
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 310
NdeII GATC 4 cut(s) 18, 117, 364, 754
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 5 cut(s) 73, 79, 118, 506, 1020
NlaIV GGNNCC 6 cut(s) 94, 95, 184, 265, 704, 844
NmeAIII GCCGAG 3 cut(s) 42, 186, 940
NmuCI GTSAC 3 cut(s) 30, 151, 409
NspI RCATGY 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 168
PctI GAATGC 1 cut(s) 977
PdiI GCCGGC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 4 cut(s) 292, 356, 633, 923
PkrI GCNGC 3 cut(s) 68, 531, 763
PleI GAGTC 2 cut(s) 54, 137
PpsI GAGTC 2 cut(s) 54, 137
Psp6I CCWGG 4 cut(s) 39, 266, 698, 800
PspGI CCWGG 4 cut(s) 39, 266, 698, 800
PspN4I GGNNCC 6 cut(s) 94, 95, 184, 265, 704, 844
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 5 cut(s) 37, 92, 93, 182, 540
PstNI CAGNNNCTG 2 cut(s) 40, 944
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 2 cut(s) 458, 982
RsaNI GTAC 2 cut(s) 457, 981
RseI CAYNNNNRTG 1 cut(s) 74
SalI GTCGAC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 864, 876, 948
SatI GCNGC 3 cut(s) 67, 530, 762
Sau3AI GATC 4 cut(s) 18, 117, 364, 754
Sau96I GGNCC 5 cut(s) 37, 92, 93, 182, 540
ScaI AGTACT 1 cut(s) 982
SchI GAGTC 2 cut(s) 54, 137
ScrFI CCNGG 5 cut(s) 41, 268, 700, 802, 840
SduI GDGCHC 3 cut(s) 96, 502, 833
SfaNI GCATC 2 cut(s) 670, 931
SinI GGWCC 2 cut(s) 182, 540
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 6 cut(s) 198, 245, 257, 435, 652, 859
SsiI CCGC 3 cut(s) 5, 275, 936
SspI AATATT 1 cut(s) 738
SspMI CTAG 3 cut(s) 623, 719, 791
StyD4I CCNGG 5 cut(s) 39, 266, 698, 800, 838
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 5 cut(s) 182, 415, 617, 980, 1011
TaqI TCGA 5 cut(s) 141, 162, 295, 660, 685
TaqII GACCGA 1 cut(s) 452
TasI AATT 6 cut(s) 198, 245, 257, 435, 652, 859
TatI WGTACW 2 cut(s) 456, 980
TfiI GAWTC 4 cut(s) 292, 356, 633, 923
Tru1I TTAA 3 cut(s) 864, 876, 948
Tru9I TTAA 3 cut(s) 864, 876, 948
TscAI CASTG 1 cut(s) 1014
TseFI GTSAC 3 cut(s) 30, 151, 409
TseI GCWGC 3 cut(s) 66, 529, 761
Tsp45I GTSAC 3 cut(s) 30, 151, 409
TspDTI ATGAA 5 cut(s) 500, 646, 797, 1004, 1005
TspRI CASTG 1 cut(s) 1014
VpaK11BI GGWCC 2 cut(s) 182, 540
XapI RAATTY 4 cut(s) 198, 257, 652, 859
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 1014
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 623, 719, 791
ZrmI AGTACT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.