Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006682

Physical Location & Seq

Genomic Coordinates Reverse (-)

13190583 .. 13196622

Gene Structure 6040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1161700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGGCCTCTTCAAACATCAGAGATCTCCTGACGGCGTTCAGTCCATCTCTGGACTTGTTCGCCATCAGCTCCGGCGACGGTCGAATCAAGATTTGGGATACTGTGAAGGGGCAGGTCCAGACTGAGTTTACAGACATTGTAGCATCCGAAGATACAAGCATATATGCTAAACGAGAAAGAGGGCACCTCTCAGTTGATTACACTTGCATGAAATGGTTCTCTTCCGAACGAAAGAAGAAGAGGAAGCTTGGTTCCTCATTTTTAGTTTTAGGAACTGGTGGCGGTGATGTTTTGGCGCTTGATGTGGCTGCTGGTCATTTGAAGTGGAGAGTTAACGATTGCCATGCTGGCGGTGTTAGCTCCATATCATTTGCAAGAAATACATCATGTCTTTACACAGCCGGTGCTGATGGGATGATTTGTCAAATTGATTCGTTGACAGGAAACCTGTCGGGGAAGTTCAAAGCTTCCACAAAGGCAATCTCCTCTATGTCTGTTTCATCAAATGGAAAAATATTAGCAACTGCAGCTGCACAAATGAAGATCTTCAATTTGTCTGACCACAAAAAGATACAGAAGTTTTCTGGCCATCCTGGTGCTGTTCGCTGTATGGTCTTCACTGAAGATGGGAAGTATATCCTCTCATCTGCAGTTGGTGAAAGGTATATTGCAGTATGGAGTATAGATGGTGGAAAAAAGCAGTCAGCAAGTGTTGTTCTCAAAATGGAGCACCCTGCCGTCTTCGTAGATAGCAGGTGCATAGACAGTGGGGAAGTTGATGATGTAGGTCTATACGTATTAGCGATTTCAGAAGTTGGTGTGTGTTACTTTTGGTTTGGACAGAATATTGAAGAATTACGGAGTGCGAAGCCTACAAAAATTTCACTATCTTCTGAAGACATTTTGTCTACAACATACAAGGGTGCATTACCCACAATATTTGCAGCGGTTATTCAAGGAATTGCGAAAGCTGCTTCTGGGCAGGTATTTGTTGCTTATGGGTCGCCAGTGAAACCTTCATTCCAGAAAATTTTGGTGCATTCTGGAACAGACATAAAGTTGAGTAGCTCCCATGACGGGGTTCTTCTACCAATGAGTCAGTCTCTTGTCAAATCTAAGAAAGGACAAAATGTACAAAATAGAGTTATTGCATTAGATCGAGCAAATGCAGAAGAGGCATTGCATCCAATGCCAAAGGTATTTGATTCACACGAGAAAAAGAAAAGACATGATAAATTGAGTTTTGGCCAAGATGAAGAAATGGCTGATTTGGATGACAGCAGGGGTCGTGCTGGCCTTGTGAAGAGCAAAGATGACATGGTAGAACTTGAAGCTGACACAGTAGCAATTTGCATGGAGGACAGACTGAAAGCATTAGGGATACTTAGTAAAGTAGATGACCATACGTTCAACTCGACACTCAATTCTGCAACCTTTAAGGGTATTGATCTTCAGAGAAATATGCTGCATAAGAAGATGAGGGAAGCTGTGCTATCATTAGAACCTAGTGACGCATGCAAATTATTGGGGGTTCTGGTGGCCACGTGGCAAACAAGGTCTAGCAGTGGGAATAACGTTCTTCCATGGATTTACAGCATATTGGTAAATCACGGTCATGATATCATGTCCCAAAAGTCTGAAACCCAGATGCTTAGCTCCTTGTTGAAGGTTACCAAATCCAGAGGGGCAGCTATTCAGCCTTTATTACAAGTATCAGGTCGTTTGCAACTTGTGATGGCACAGATTGACAAGGCAACCCACGCAAAAACTCAAATTTCATCACACGAGCACGAAATGGATGAAAGCGAAGATGACGATGAAGATGTAAACGAAATTCACTATGGGGAAGAAAACGATGATTCTGACATAAGCAGTGATGATGATCATTTTCTGCTCATAAGCTGCATTTCCTGTGCAGCTTGTGGATTTAGGACAGAAAGGCTCGATGCGGTGCAGTCTGTTCAACATTCCCGTCCGTTAATCAGGCAACTTTTAATGCTCGGTTTCTGGCCCTGTCCAAGTTCAACACCCACAGTTTTCATTTCCTCTGGGGTTAACCCCTCTACCCATTACCATGGTGACGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

697

Amino Acids

75.93

Weight (kDa)

6.23

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	13 - 141	8.1e-07	WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz	PF24807	67 - 233	3e-12	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	86 - 181	7.3e-07	THOC3 beta-propeller domain
Beta-prop_ACSF4	PF13570	86 - 193	8.7e-06	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_ACSF4	PF13570	86 - 230	5.9e-06	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	86 - 232	4.3e-08	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	87 - 239	9.6e-09	WDR55
Beta-prop_WDR3_1st	PF25173	96 - 232	2.2e-11	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	100 - 237	8.1e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	111 - 228	5.2e-12	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	114 - 232	1.9e-14	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	121 - 240	3.9e-09	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	153 - 234	5.9e-06	MABP1/WDR62 first WD40 domain
Utp12	PF04003	491 - 579	3.1e-11	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006682)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11240
fragaria_vesca	FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810 FvH4_6g31810
malus_domestica	MD13G1161900.v1.1 MD16G1161700.v1.1
prunus_persica	Prupe.1G129200_v2.0.a1
pyrus_communis	pycom13g13800
rosa_chinensis	RchiOBHm_Chr4g0423831
rosa_laevigata	RLG00000007528
rosa_multiflora	Rmu_sc0003369.1_g000013 Rmu_sc0041036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365950
rosa_rugosa	Rorug04G0191100 Rorug04G0191200 Rorug04G0191200
rosa_samantha	Rh4AG250500 Rh4BG255800 Rh4CG264000 Rh4DG250300
rosa_wichuraiana	Rw4G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	744
Acc36I	ACCTGC	3 cut(s)	103, 744, 973
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	908
AciI	CCGC	4 cut(s)	282, 351, 947, 1949
AclI	AACGTT	1 cut(s)	1575
AcoI	YGGCCR	3 cut(s)	586, 1246, 1539
AcsI	RAATTY	5 cut(s)	879, 1029, 1773, 1833, 2085
AcuI	CTGAAG	3 cut(s)	642, 915, 1436
AcvI	CACGTG	1 cut(s)	1545
AfaI	GTAC	1 cut(s)	1134
AfiI	CCNNNNNNNGG	2 cut(s)	1077, 1078
AhdI	GACNNNNNGTC	1 cut(s)	904
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AloI	GAACNNNNNNTCC	2 cut(s)	235, 267
Alw21I	GWGCWC	2 cut(s)	732, 1791
Alw26I	GTCTC	1 cut(s)	1107
AoxI	GGCC	6 cut(s)	3, 586, 1246, 1294, 1539, 2009
ApeKI	GCWGC	9 cut(s)	308, 527, 530, 944, 971, 1465, 1688, 1902, 1916
ApoI	RAATTY	5 cut(s)	879, 1029, 1773, 1833, 2085
Asp700I	GAANNNNTTC	2 cut(s)	215, 545
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	115, 2010
AsuHPI	GGTGA	3 cut(s)	296, 668, 2090
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	186
BaeI	ACNNNNGTAYC	2 cut(s)	563, 596
BalI	TGGCCA	3 cut(s)	588, 1248, 1541
BanI	GGYRCC	1 cut(s)	183
BauI	CACGAG	2 cut(s)	1211, 1784
BbrPI	CACGTG	1 cut(s)	1545
BbsI	GAAGAC	3 cut(s)	607, 733, 903
Bbv12I	GWGCWC	2 cut(s)	732, 1791
BbvI	GCAGC	9 cut(s)	295, 517, 539, 956, 958, 1452, 1700, 1889, 1928
BccI	CCATC	7 cut(s)	52, 71, 404, 597, 620, 680, 1729
BceAI	ACGGC	2 cut(s)	48, 722
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	594
BciVI	GTATCC	2 cut(s)	91, 1374
BclI	TGATCA	1 cut(s)	1882
BcoDI	GTCTC	1 cut(s)	1107
BfaI	CTAG	2 cut(s)	1506, 1560
BfmI	CTRYAG	2 cut(s)	525, 648
BfoI	RGCGCY	1 cut(s)	299
BfuAI	ACCTGC	3 cut(s)	103, 744, 973
BfuI	GTATCC	2 cut(s)	91, 1374
BglI	GCCNNNNNGGC	1 cut(s)	348
BglII	AGATCT	2 cut(s)	22, 543
BisI	GCNGC	9 cut(s)	309, 528, 531, 945, 972, 1466, 1689, 1903, 1917
BlpI	GCTNAGC	1 cut(s)	1652
BlsI	GCNGC	9 cut(s)	310, 529, 532, 946, 973, 1467, 1690, 1904, 1918
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	904
BmgT120I	GGNCC	2 cut(s)	115, 2010
BmiI	GGNNCC	2 cut(s)	185, 253
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	4 cut(s)	152, 1192, 1638, 1936
BpiI	GAAGAC	3 cut(s)	607, 733, 903
BplI	GAGNNNNNCTC	4 cut(s)	171, 203, 1087, 1119
Bpu1102I	GCTNAGC	1 cut(s)	1652
BsaAI	YACGTR	2 cut(s)	796, 1545
BsaBI	GATNNNNATC	1 cut(s)	1881
BsaJI	CCNNGG	2 cut(s)	1583, 2074
Bsc4I	CCNNNNNNNGG	2 cut(s)	1077, 1078
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	280, 1007
Bse3DI	GCAATG	1 cut(s)	1178
Bse8I	GATNNNNATC	1 cut(s)	1881
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	1583, 2074
BseGI	GGATG	6 cut(s)	143, 420, 589, 1183, 1279, 1804
BseJI	GATNNNNATC	1 cut(s)	1881
BseLI	CCNNNNNNNGG	2 cut(s)	1077, 1078
BseMI	GCAATG	1 cut(s)	1178
BseMII	CTCAG	2 cut(s)	114, 204
BseNI	ACTGG	2 cut(s)	280, 1007
BseRI	GAGGAG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	9 cut(s)	295, 517, 539, 956, 958, 1452, 1700, 1889, 1928
BsgI	GTGCAG	3 cut(s)	516, 1935, 1973
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	6 cut(s)	5, 588, 1248, 1296, 1541, 2011
BshNI	GGYRCC	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	732, 1791
BsiSI	CCGG	2 cut(s)	72, 402
BslFI	GGGAC	1 cut(s)	1612
BslI	CCNNNNNNNGG	2 cut(s)	1077, 1078
BsmAI	GTCTC	1 cut(s)	1107
BsmFI	GGGAC	1 cut(s)	1612
BsmI	GAATGC	1 cut(s)	1039
BsnI	GGCC	6 cut(s)	5, 588, 1248, 1296, 1541, 2011
Bsp1286I	GDGCHC	3 cut(s)	186, 732, 1791
Bsp1407I	TGTACA	1 cut(s)	1132
Bsp143I	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
Bsp1720I	GCTNAGC	1 cut(s)	1652
Bsp19I	CCATGG	2 cut(s)	1583, 2074
BspACI	CCGC	4 cut(s)	282, 351, 947, 1949
BspANI	GGCC	6 cut(s)	5, 588, 1248, 1296, 1541, 2011
BspCNI	CTCAG	2 cut(s)	115, 203
BspHI	TCATGA	1 cut(s)	1615
BspLI	GGNNCC	2 cut(s)	185, 253
BspMAI	CTGCAG	2 cut(s)	529, 652
BspMI	ACCTGC	3 cut(s)	103, 744, 973
BspQI	GCTCTTC	1 cut(s)	1298
BspT107I	GGYRCC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	1178
BsrFI	RCCGGY	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	1132
BsrI	ACTGG	2 cut(s)	280, 1007
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	1583, 2074
BssMI	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
BssSI	CACGAG	2 cut(s)	1211, 1784
BssT1I	CCWWGG	2 cut(s)	1583, 2074
Bst2BI	CACGAG	2 cut(s)	1211, 1784
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	6 cut(s)	80, 103, 767, 1342, 1613, 2035
Bst6I	CTCTTC	5 cut(s)	13, 226, 233, 1167, 1298
BstAPI	GCANNNNNTGC	1 cut(s)	1189
BstAUI	TGTACA	1 cut(s)	1132
BstBAI	YACGTR	2 cut(s)	796, 1545
BstC8I	GCNNGC	3 cut(s)	349, 1294, 1516
BstDEI	CTNAG	5 cut(s)	123, 190, 1116, 1385, 1652
BstDSI	CCRYGG	2 cut(s)	1583, 2074
BstEII	GGTNACC	1 cut(s)	1669
BstF5I	GGATG	6 cut(s)	143, 420, 589, 1183, 1279, 1804
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	5 cut(s)	25, 546, 1159, 1450, 1885
BstMAI	GTCTC	1 cut(s)	1107
BstMBI	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	348, 357, 527, 971, 1175, 1189, 1760
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	1518
BstPI	GGTNACC	1 cut(s)	1669
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	2 cut(s)	525, 648
BstSLI	GKGCMC	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	796
BstV1I	GCAGC	9 cut(s)	295, 517, 539, 956, 958, 1452, 1700, 1889, 1928
BstV2I	GAAGAC	3 cut(s)	607, 733, 903
BstX2I	RGATCY	2 cut(s)	22, 543
BstXI	CCANNNNNNTGG	1 cut(s)	2075
BstYI	RGATCY	2 cut(s)	22, 543
BsuI	GTATCC	2 cut(s)	91, 1374
BsuRI	GGCC	6 cut(s)	5, 588, 1248, 1296, 1541, 2011
BtgI	CCRYGG	2 cut(s)	1583, 2074
BtsCI	GGATG	6 cut(s)	143, 420, 589, 1183, 1279, 1804
BtsI	GCAGTG	2 cut(s)	1570, 1879
BtsIMutI	CAGTG	5 cut(s)	618, 772, 1014, 1570, 1879
BveI	ACCTGC	3 cut(s)	103, 744, 973
Cac8I	GCNNGC	3 cut(s)	349, 1294, 1516
CciI	TCATGA	1 cut(s)	1615
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	115, 2010
CseI	GACGC	1 cut(s)	1520
Csp6I	GTAC	1 cut(s)	1133
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviQI	GTAC	1 cut(s)	1133
DdeI	CTNAG	5 cut(s)	123, 190, 1116, 1385, 1652
DpnI	GATC	5 cut(s)	24, 545, 1158, 1449, 1884
DpnII	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
DriI	GACNNNNNGTC	1 cut(s)	904
EaeI	YGGCCR	3 cut(s)	586, 1246, 1539
Eam1104I	CTCTTC	5 cut(s)	13, 226, 233, 1167, 1298
Eam1105I	GACNNNNNGTC	1 cut(s)	904
EarI	CTCTTC	5 cut(s)	13, 226, 233, 1167, 1298
Eco105I	TACGTA	1 cut(s)	796
Eco130I	CCWWGG	2 cut(s)	1583, 2074
Eco32I	GATATC	1 cut(s)	1621
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	3 cut(s)	642, 915, 1436
Eco72I	CACGTG	1 cut(s)	1545
Eco91I	GGTNACC	1 cut(s)	1669
EcoO65I	GGTNACC	1 cut(s)	1669
EcoRII	CCWGG	1 cut(s)	592
EcoRV	GATATC	1 cut(s)	1621
EcoT14I	CCWWGG	2 cut(s)	1583, 2074
ErhI	CCWWGG	2 cut(s)	1583, 2074
FaqI	GGGAC	1 cut(s)	1612
FbaI	TGATCA	1 cut(s)	1882
FblI	GTMKAC	1 cut(s)	908
Fnu4HI	GCNGC	9 cut(s)	309, 528, 531, 945, 972, 1466, 1689, 1903, 1917
FokI	GGATG	6 cut(s)	130, 427, 576, 1170, 1286, 1811
Fsp4HI	GCNGC	9 cut(s)	309, 528, 531, 945, 972, 1466, 1689, 1903, 1917
FspBI	CTAG	2 cut(s)	1506, 1560
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	9 cut(s)	309, 528, 531, 945, 972, 1466, 1689, 1903, 1917
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	6 cut(s)	5, 588, 1248, 1296, 1541, 2011
HapII	CCGG	2 cut(s)	72, 402
HgaI	GACGC	1 cut(s)	1520
HhaI	GCGC	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	3 cut(s)	334, 438, 2056
HindII	GTYRAC	3 cut(s)	334, 438, 2056
HindIII	AAGCTT	2 cut(s)	245, 465
HinfI	GANTC	5 cut(s)	84, 431, 1096, 1205, 1859
HpaI	GTTAAC	2 cut(s)	334, 2056
HpaII	CCGG	2 cut(s)	72, 402
HphI	GGTGA	3 cut(s)	296, 668, 2090
Hpy166II	GTNNAC	6 cut(s)	129, 334, 438, 909, 1828, 2056
Hpy188I	TCNGA	9 cut(s)	20, 148, 226, 559, 811, 895, 1455, 1639, 1864
Hpy188III	TCNNGA	8 cut(s)	28, 50, 88, 118, 1024, 1044, 1616, 1680
Hpy8I	GTNNAC	6 cut(s)	129, 334, 438, 909, 1828, 2056
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	100, 1026, 1660
HpyCH4III	ACNGT	6 cut(s)	80, 103, 767, 1342, 1613, 2035
HpyCH4IV	ACGT	4 cut(s)	795, 1406, 1544, 1575
HpyF10VI	GCNNNNNNNGC	7 cut(s)	348, 357, 527, 971, 1175, 1189, 1760
HpyF3I	CTNAG	5 cut(s)	123, 190, 1116, 1385, 1652
HpySE526I	ACGT	4 cut(s)	795, 1406, 1544, 1575
HspAI	GCGC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	1882
KspAI	GTTAAC	2 cut(s)	334, 2056
Kzo9I	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
LguI	GCTCTTC	1 cut(s)	1298
LmnI	GCTCC	5 cut(s)	74, 365, 727, 1073, 1661
Lsp1109I	GCAGC	9 cut(s)	295, 517, 539, 956, 958, 1452, 1700, 1889, 1928
LweI	GCATC	4 cut(s)	152, 1192, 1638, 1936
MaeI	CTAG	2 cut(s)	1506, 1560
MaeII	ACGT	4 cut(s)	795, 1406, 1544, 1575
MaeIII	GTNAC	4 cut(s)	824, 1508, 1669, 2078
MalI	GATC	5 cut(s)	24, 545, 1158, 1449, 1884
MboI	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
MflI	RGATCY	2 cut(s)	22, 543
MhlI	GDGCHC	3 cut(s)	186, 732, 1791
MlsI	TGGCCA	3 cut(s)	588, 1248, 1541
MluNI	TGGCCA	3 cut(s)	588, 1248, 1541
MlyI	GAGTC	1 cut(s)	1105
Mox20I	TGGCCA	3 cut(s)	588, 1248, 1541
MroXI	GAANNNNTTC	2 cut(s)	215, 545
MscI	TGGCCA	3 cut(s)	588, 1248, 1541
MseI	TTAA	5 cut(s)	333, 1437, 1979, 1994, 2055
MslI	CAYNNNNRTG	4 cut(s)	206, 594, 1614, 2073
Msp20I	TGGCCA	3 cut(s)	588, 1248, 1541
MspA1I	CMGCKG	2 cut(s)	530, 947
MspI	CCGG	2 cut(s)	72, 402
MspR9I	CCNGG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	1039
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	7 cut(s)	348, 357, 527, 971, 1175, 1189, 1760
NcoI	CCATGG	2 cut(s)	1583, 2074
NdeII	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
NlaIV	GGNNCC	2 cut(s)	185, 253
NmuCI	GTSAC	2 cut(s)	1508, 2078
NspI	RCATGY	1 cut(s)	1518
PaeI	GCATGC	1 cut(s)	1518
PagI	TCATGA	1 cut(s)	1615
PaqCI	CACCTGC	1 cut(s)	744
PciSI	GCTCTTC	1 cut(s)	1298
PcsI	WCGNNNNNNNCGW	1 cut(s)	1412
PctI	GAATGC	1 cut(s)	1039
PdmI	GAANNNNTTC	2 cut(s)	215, 545
PfeI	GAWTC	4 cut(s)	84, 431, 1205, 1859
PkrI	GCNGC	9 cut(s)	310, 529, 532, 946, 973, 1467, 1690, 1904, 1918
PleI	GAGTC	1 cut(s)	1104
PmaCI	CACGTG	1 cut(s)	1545
PmlI	CACGTG	1 cut(s)	1545
PpsI	GAGTC	1 cut(s)	1104
Ppu21I	YACGTR	2 cut(s)	796, 1545
Psp1406I	AACGTT	1 cut(s)	1575
Psp6I	CCWGG	1 cut(s)	592
PspCI	CACGTG	1 cut(s)	1545
PspEI	GGTNACC	1 cut(s)	1669
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	185, 253
PspPI	GGNCC	2 cut(s)	115, 2010
PstI	CTGCAG	2 cut(s)	529, 652
PsuI	RGATCY	2 cut(s)	22, 543
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	1134
RsaNI	GTAC	1 cut(s)	1133
RseI	CAYNNNNRTG	4 cut(s)	206, 594, 1614, 2073
SapI	GCTCTTC	1 cut(s)	1298
SaqAI	TTAA	5 cut(s)	333, 1437, 1979, 1994, 2055
SatI	GCNGC	9 cut(s)	309, 528, 531, 945, 972, 1466, 1689, 1903, 1917
Sau3AI	GATC	5 cut(s)	22, 543, 1156, 1447, 1882
Sau96I	GGNCC	2 cut(s)	115, 2010
SchI	GAGTC	1 cut(s)	1105
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	3 cut(s)	186, 732, 1791
SfaNI	GCATC	4 cut(s)	152, 1192, 1638, 1936
SfcI	CTRYAG	2 cut(s)	525, 648
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	4 cut(s)	206, 594, 1614, 2073
SnaBI	TACGTA	1 cut(s)	796
SphI	GCATGC	1 cut(s)	1518
SsiI	CCGC	4 cut(s)	282, 351, 947, 1949
SspI	AATATT	3 cut(s)	516, 847, 939
SspMI	CTAG	2 cut(s)	1506, 1560
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	2 cut(s)	1583, 2074
TaaI	ACNGT	6 cut(s)	80, 103, 767, 1342, 1613, 2035
TaiI	ACGT	4 cut(s)	798, 1409, 1547, 1578
TaqI	TCGA	4 cut(s)	82, 1159, 1415, 1944
TatI	WGTACW	1 cut(s)	1132
TfiI	GAWTC	4 cut(s)	84, 431, 1205, 1859
Tru1I	TTAA	5 cut(s)	333, 1437, 1979, 1994, 2055
Tru9I	TTAA	5 cut(s)	333, 1437, 1979, 1994, 2055
TscAI	CASTG	5 cut(s)	625, 772, 1014, 1570, 1879
TseFI	GTSAC	2 cut(s)	1508, 2078
TseI	GCWGC	9 cut(s)	308, 527, 530, 944, 971, 1465, 1688, 1902, 1916
Tsp45I	GTSAC	2 cut(s)	1508, 2078
TspDTI	ATGAA	9 cut(s)	224, 489, 554, 1008, 1269, 1767, 1815, 1833, 2029
TspGWI	ACGGA	2 cut(s)	874, 1965
TspRI	CASTG	5 cut(s)	625, 772, 1014, 1570, 1879
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	5 cut(s)	879, 1029, 1773, 1833, 2085
XceI	RCATGY	1 cut(s)	1518
XmiI	GTMKAC	1 cut(s)	908
XmnI	GAANNNNTTC	2 cut(s)	215, 545
XspI	CTAG	2 cut(s)	1506, 1560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.