Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016964

Physical Location & Seq

Genomic Coordinates Forward (+)

21684439 .. 21684819

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGACAGATGGATGGAGCCCATTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAAAGACTCATGTTGAGGGACAGAACAAGTGAGGATGATGCTCGAAATCGGATAAATGCTCAGATGTCACTCGATTTAAAGAGGGCTAAGGCAAACATAGTGATTGATAACACGGGATCACAAGAGAATTTAAAAGAGAAGTTTAAGAGTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGATTGAATTTTGGCTTTCTCGACAAGGTGCTCCATCTGCTCTTGTCTCCATCATCGTAGGTGTTCTTATGTTTAGAAAAGTTTATAATAGTGATAGTAAATTATACAACTTCAGAGTTGTACTTATTGAGATATTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

127

Amino Acids

14.76

Weight (kDa)

9.04

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	2 - 60	1.5e-13	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016964)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g26550
rosa_chinensis	RchiOBHm_Chr4g0419031
rosa_laevigata	RLG00000007830
rosa_multiflora	Rmu_sc0000913.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362100 Rroxscaffold_7G00205500
rosa_samantha	Rh1AG132300 Rh1DG139300 Rh4AG218100 Rh4CG230100 Rh4DG216700 Rh6AG347800 Rh7CG360800
rosa_wichuraiana	Rw4G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AclWI	GGATC	2 cut(s)	35, 181
AcsI	RAATTY	2 cut(s)	184, 245
AcuI	CTGAAG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	35, 181
ApoI	RAATTY	2 cut(s)	184, 245
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	4 cut(s)	3, 7, 280, 296
BcoDI	GTCTC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	374
BseGI	GGATG	2 cut(s)	18, 97
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	21, 271
Bsp143I	GATC	3 cut(s)	40, 173, 375
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	35, 181
BssMI	GATC	3 cut(s)	40, 173, 375
BstDEI	CTNAG	2 cut(s)	117, 144
BstF5I	GGATG	2 cut(s)	18, 97
BstKTI	GATC	3 cut(s)	43, 176, 378
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	3 cut(s)	40, 173, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	18, 97
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	67, 237
CviJI	RGCY	5 cut(s)	19, 55, 143, 229, 253
CviKI_1	RGCY	5 cut(s)	19, 55, 143, 229, 253
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	117, 144
DpnI	GATC	3 cut(s)	42, 175, 377
DpnII	GATC	3 cut(s)	40, 173, 375
DraI	TTTAAA	2 cut(s)	135, 189
Eco24I	GRGCYC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	70, 240
FaiI	YATR	7 cut(s)	34, 68, 155, 238, 308, 324, 343
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	66, 236
FokI	GGATG	2 cut(s)	25, 104
FriOI	GRGCYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	70, 240
HinfI	GANTC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	108, 120, 353
Hpy188III	TCNNGA	2 cut(s)	44, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	117, 144
Hsp92II	CATG	2 cut(s)	70, 240
Kzo9I	GATC	3 cut(s)	40, 173, 375
LmnI	GCTCC	3 cut(s)	16, 60, 274
LpnPI	CCDG	1 cut(s)	57
LweI	GCATC	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	123, 220
MalI	GATC	3 cut(s)	42, 175, 377
MboI	GATC	3 cut(s)	40, 173, 375
MhlI	GDGCHC	2 cut(s)	21, 271
MluCI	AATT	3 cut(s)	184, 245, 338
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	66, 82, 132, 211
MseI	TTAA	3 cut(s)	134, 188, 201
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	40, 173, 375
NlaIII	CATG	2 cut(s)	70, 240
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	123, 220
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	134, 188, 201
Sau3AI	GATC	3 cut(s)	40, 173, 375
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	21, 271
SetI	ASST	4 cut(s)	57, 222, 268, 301
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	184, 245, 338
TaqI	TCGA	4 cut(s)	39, 100, 129, 259
TasI	AATT	3 cut(s)	184, 245, 338
TatI	WGTACW	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	134, 188, 201
Tru9I	TTAA	3 cut(s)	134, 188, 201
TseFI	GTSAC	2 cut(s)	123, 220
Tsp45I	GTSAC	2 cut(s)	123, 220
XapI	RAATTY	2 cut(s)	184, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.