Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016964

Physical Location & Seq

Genomic Coordinates Reverse (-)

44768890 .. 44781078

Gene Structure 12189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG360800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAACACTGGAAGACTGTATATGCCCCAAAGTGTCAATTGAAAGTCACGTACGTGAGACTACTGGCCCCTTACATATCATCTGGAATCTTTTGGGAAATTTGGAAGCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATGTCCCTCTATTGTTCGAGGCCAAGATTGACAGATGGACCAAGCCTGTTATTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTTGAGGGACAGAACAAGTGAGAATGATGCTCGAAAACGGATAAATGCTCAAGTGTCACTCGATTTAAAGAGGACCATGGCAGACATTGTGATTGATAACACTGGATCACAAGAGGATTTAAAAGACAAGTTTAAAACTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAACTTTGGCTTTCTCGCCAAGGTGCTTCATCTGCTCTTGTCTCCATTATCGTAGGTGTTCTTATGTTCAGAAAAGTTTATAATAGTGATAGTAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

170

Amino Acids

19.86

Weight (kDa)

9.54

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	20 - 116	3e-22	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016964)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g26550
rosa_chinensis	RchiOBHm_Chr4g0419031
rosa_laevigata	RLG00000007830
rosa_multiflora	Rmu_sc0000913.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362100 Rroxscaffold_7G00205500
rosa_samantha	Rh1AG132300 Rh1DG139300 Rh4AG218100 Rh4CG230100 Rh4DG216700 Rh6AG347800 Rh7CG360800
rosa_wichuraiana	Rw4G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	492, 511
AclWI	GGATC	2 cut(s)	203, 349
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	43, 118
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	109, 223
AluI	AGCT	2 cut(s)	109, 223
Alw26I	GTCTC	3 cut(s)	52, 223, 457
AlwI	GGATC	2 cut(s)	203, 349
AoxI	GGCC	2 cut(s)	66, 162
ApoI	RAATTY	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	67, 180, 309
AvaII	GGWCC	2 cut(s)	180, 309
BbsI	GAAGAC	1 cut(s)	20
BccI	CCATC	1 cut(s)	171
BcoDI	GTCTC	3 cut(s)	52, 223, 457
Bme18I	GGWCC	2 cut(s)	180, 309
BmgT120I	GGNCC	3 cut(s)	67, 180, 309
BmiI	GGNNCC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	270
BsaAI	YACGTR	2 cut(s)	51, 55
BsaJI	CCNNGG	2 cut(s)	312, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	3 cut(s)	14, 69, 343
BseDI	CCNNGG	2 cut(s)	312, 430
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseNI	ACTGG	3 cut(s)	14, 69, 343
BshFI	GGCC	2 cut(s)	68, 164
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	131, 257
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	3 cut(s)	52, 223, 457
BsmFI	GGGAC	2 cut(s)	131, 257
BsnI	GGCC	2 cut(s)	68, 164
Bsp143I	GATC	2 cut(s)	208, 341
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	2 cut(s)	68, 164
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	203, 349
BsrI	ACTGG	3 cut(s)	14, 69, 343
BssECI	CCNNGG	2 cut(s)	312, 430
BssMI	GATC	2 cut(s)	208, 341
BssT1I	CCWWGG	2 cut(s)	312, 430
Bst4CI	ACNGT	2 cut(s)	19, 376
BstBAI	YACGTR	2 cut(s)	51, 55
BstDSI	CCRYGG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	211, 344
BstMAI	GTCTC	3 cut(s)	52, 223, 457
BstMBI	GATC	2 cut(s)	208, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	68, 164
BtgI	CCRYGG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	7, 336
Cfr13I	GGNCC	3 cut(s)	67, 180, 309
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	235, 313, 405
CviJI	RGCY	7 cut(s)	68, 109, 164, 187, 223, 397, 421
CviKI_1	RGCY	7 cut(s)	68, 109, 164, 187, 223, 397, 421
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	2 cut(s)	210, 343
DpnII	GATC	2 cut(s)	208, 341
DraI	TTTAAA	3 cut(s)	303, 357, 370
Eco130I	CCWWGG	2 cut(s)	312, 430
Eco47I	GGWCC	2 cut(s)	180, 309
EcoT14I	CCWWGG	2 cut(s)	312, 430
ErhI	CCWWGG	2 cut(s)	312, 430
FaeI	CATG	3 cut(s)	238, 316, 408
FaqI	GGGAC	2 cut(s)	131, 257
FatI	CATG	3 cut(s)	234, 312, 404
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	68, 164
Hin1II	CATG	3 cut(s)	238, 316, 408
HinfI	GANTC	2 cut(s)	87, 231
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	4 cut(s)	84, 140, 212, 226
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	19, 376
HpyCH4IV	ACGT	2 cut(s)	50, 54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpySE526I	ACGT	2 cut(s)	50, 54
Hsp92II	CATG	3 cut(s)	238, 316, 408
Kzo9I	GATC	2 cut(s)	208, 341
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	6 cut(s)	50, 69, 201, 225, 239, 324
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	2 cut(s)	50, 54
MaeIII	GTNAC	3 cut(s)	46, 291, 388
MalI	GATC	2 cut(s)	210, 343
MboI	GATC	2 cut(s)	208, 341
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	38
MluCI	AATT	3 cut(s)	38, 99, 506
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	154, 159, 234, 300, 343, 379
MseI	TTAA	4 cut(s)	126, 302, 356, 369
MslI	CAYNNNNRTG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	208, 341
NlaIII	CATG	3 cut(s)	238, 316, 408
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	3 cut(s)	46, 291, 388
OliI	CACNNNNGTG	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	87
Pfl23II	CGTACG	1 cut(s)	51
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Ppu21I	YACGTR	2 cut(s)	51, 55
PsiI	TTATAA	2 cut(s)	492, 511
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	3 cut(s)	67, 180, 309
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	126, 302, 356, 369
Sau3AI	GATC	2 cut(s)	208, 341
Sau96I	GGNCC	3 cut(s)	67, 180, 309
SchI	GAGTC	1 cut(s)	225
SetI	ASST	8 cut(s)	53, 57, 111, 132, 225, 390, 436, 469
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	2 cut(s)	180, 309
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	38, 99, 506
StyI	CCWWGG	2 cut(s)	312, 430
TaaI	ACNGT	2 cut(s)	19, 376
TaiI	ACGT	2 cut(s)	53, 57
TaqI	TCGA	4 cut(s)	159, 207, 268, 297
TasI	AATT	3 cut(s)	38, 99, 506
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	4 cut(s)	126, 302, 356, 369
Tru9I	TTAA	4 cut(s)	126, 302, 356, 369
TscAI	CASTG	2 cut(s)	14, 343
TseFI	GTSAC	3 cut(s)	46, 291, 388
Tsp45I	GTSAC	3 cut(s)	46, 291, 388
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	2 cut(s)	14, 343
VpaK11BI	GGWCC	2 cut(s)	180, 309
XapI	RAATTY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.