Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016964

Physical Location & Seq

Genomic Coordinates Forward (+)

54805502 .. 54807445

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGACAGATGGACAAAGCCCATTCTTGTTGTATGGGTCGATCCTGAAACACAGCTCCAGAGACTCATGTCGAGGGACAGAACAAGTGAGGATGATGCTCGAAACAGAATAAATGCTCAGATGTCACTTGATTTAAAGAGGACTAAGGCAGACGTAGTGATTGATAACACTGGATCACAAGAGGATTTGAAAGAGAAGTTTAAGAGTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAATTTTGGCTTTCTCGACAAGGTGCTTCATCTGCTCTTGTCTCCATTATCATCGGTGTTCTTTTGTTCAGAAAAGTTTATAACAGTGATAGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

114

Amino Acids

13.22

Weight (kDa)

9.05

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	2 - 60	2.1e-14	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016964)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g26550
rosa_chinensis	RchiOBHm_Chr4g0419031
rosa_laevigata	RLG00000007830
rosa_multiflora	Rmu_sc0000913.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362100 Rroxscaffold_7G00205500
rosa_samantha	Rh1AG132300 Rh1DG139300 Rh4AG218100 Rh4CG230100 Rh4DG216700 Rh6AG347800 Rh7CG360800
rosa_wichuraiana	Rw4G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AclWI	GGATC	2 cut(s)	35, 181
AcsI	RAATTY	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	2 cut(s)	55, 289
AlwI	GGATC	2 cut(s)	35, 181
ApoI	RAATTY	1 cut(s)	245
BccI	CCATC	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	55, 289
BmsI	GCATC	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	55, 289
BsmFI	GGGAC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	40, 173
BspCNI	CTCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	35, 181
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	40, 173
Bst4CI	ACNGT	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	117, 144
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	43, 176
BstMAI	GTCTC	2 cut(s)	55, 289
BstMBI	GATC	2 cut(s)	40, 173
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstPAI	GACNNNNGTC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	168, 334
CviAII	CATG	2 cut(s)	67, 237
CviJI	RGCY	4 cut(s)	19, 55, 229, 253
CviKI_1	RGCY	4 cut(s)	19, 55, 229, 253
DdeI	CTNAG	2 cut(s)	117, 144
DpnI	GATC	2 cut(s)	42, 175
DpnII	GATC	2 cut(s)	40, 173
DraI	TTTAAA	1 cut(s)	135
FaeI	CATG	2 cut(s)	70, 240
FaiI	YATR	5 cut(s)	34, 68, 238, 324, 343
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	66, 236
FokI	GGATG	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	41
Hin1II	CATG	2 cut(s)	70, 240
HinfI	GANTC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	120, 314
Hpy188III	TCNNGA	3 cut(s)	44, 58, 258
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	117, 144
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	70, 240
Kzo9I	GATC	2 cut(s)	40, 173
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	57, 71, 156
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	123, 220
MalI	GATC	2 cut(s)	42, 175
MboI	GATC	2 cut(s)	40, 173
MluCI	AATT	2 cut(s)	245, 338
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	66, 82, 132, 175, 211
MseI	TTAA	2 cut(s)	134, 201
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	40, 173
NlaIII	CATG	2 cut(s)	70, 240
NmuCI	GTSAC	2 cut(s)	123, 220
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	134, 201
Sau3AI	GATC	2 cut(s)	40, 173
SchI	GAGTC	1 cut(s)	57
SetI	ASST	4 cut(s)	57, 156, 222, 268
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	245, 338
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	39, 71, 100, 259
TasI	AATT	2 cut(s)	245, 338
Tru1I	TTAA	2 cut(s)	134, 201
Tru9I	TTAA	2 cut(s)	134, 201
TscAI	CASTG	2 cut(s)	175, 334
TseFI	GTSAC	2 cut(s)	123, 220
Tsp45I	GTSAC	2 cut(s)	123, 220
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	175, 334
XapI	RAATTY	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.