Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016964

Physical Location & Seq

Genomic Coordinates Reverse (-)

55080751 .. 55081349

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTGGCTTGTGATCTATTGAAGAAGGGAACTGGTGGATGGAAAAAGTCAGCATTTGGACAGGGCATTTTGCTACCTGATGGAGAAGTTGATAGGCCTAAACTAGGACAAATTCTATGGTTGAAGGGGTTTAAGGTTATTGTTCTTGATATCCCTCTGTTGTTCGAGGCCAAGATGGACACATGGACAAAGCCCATTATTGTTGTATGGGTTGATCCTGAAACACAACTCCAGAGACTCAAGTTGAGAGATAGAATAAGTGAGGATGATGCTCGAAACCGGATAAATGTTCAGATGTCACTTGATTTAAAGAGGAGTAAGGCAGACATAGTGAATGATAACATTAGATCACAAGATGATCTCAAAGAGAAGTTTAAGAGTTTGCTATTTGAGGTCACAAAGCCCTTGACAAGGACTGAATTTTGGCTTTCTCCACAAGGTGCTTCGTCTGCTCTTGTCTCCATTATCTTAGGTGTTCTTATGTTCAAAAAAGTTTATAATAGTGATAGTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

172

Amino Acids

19.57

Weight (kDa)

9.43

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	45 - 115	1.8e-17	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016964)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g26550
rosa_chinensis	RchiOBHm_Chr4g0419031
rosa_laevigata	RLG00000007830
rosa_multiflora	Rmu_sc0000913.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362100 Rroxscaffold_7G00205500
rosa_samantha	Rh1AG132300 Rh1DG139300 Rh4AG218100 Rh4CG230100 Rh4DG216700 Rh6AG347800 Rh7CG360800
rosa_wichuraiana	Rw4G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	111, 419
AdeI	CACNNNGTG	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	104, 411
AgsI	TTSAA	3 cut(s)	22, 124, 487
Alw26I	GTCTC	2 cut(s)	229, 463
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	95, 168
ApoI	RAATTY	2 cut(s)	111, 419
BccI	CCATC	3 cut(s)	33, 74, 169
BcoDI	GTCTC	2 cut(s)	229, 463
BfaI	CTAG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 411
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	44, 271
BseLI	CCNNNNNNNGG	2 cut(s)	104, 411
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	97, 170
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	104, 411
BsmAI	GTCTC	2 cut(s)	229, 463
BsnI	GGCC	2 cut(s)	97, 170
Bsp143I	GATC	4 cut(s)	13, 214, 347, 358
BspANI	GGCC	2 cut(s)	97, 170
BspPI	GGATC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	13, 214, 347, 358
BstDEI	CTNAG	1 cut(s)	469
BstENI	CCTNNNNNAGG	2 cut(s)	102, 409
BstF5I	GGATG	2 cut(s)	44, 271
BstKTI	GATC	4 cut(s)	16, 217, 350, 361
BstMAI	GTCTC	2 cut(s)	229, 463
BstMBI	GATC	4 cut(s)	13, 214, 347, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	97, 170
BtsCI	GGATG	2 cut(s)	44, 271
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	8, 97, 170, 193, 403, 427
CviKI_1	RGCY	6 cut(s)	8, 97, 170, 193, 403, 427
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	4 cut(s)	15, 216, 349, 360
DpnII	GATC	4 cut(s)	13, 214, 347, 358
DraI	TTTAAA	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	2 cut(s)	102, 409
EcoRV	GATATC	1 cut(s)	151
FaeI	CATG	1 cut(s)	186
FaiI	YATR	7 cut(s)	118, 184, 208, 329, 482, 498, 517
FatI	CATG	1 cut(s)	182
FokI	GGATG	2 cut(s)	51, 278
FspBI	CTAG	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	97, 170
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	1 cut(s)	186
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	3 cut(s)	146, 218, 232
HpyAV	CCTTC	2 cut(s)	19, 118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	469
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	13, 214, 347, 358
LpnPI	CCDG	6 cut(s)	18, 47, 90, 231, 245, 293
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	297, 394
MalI	GATC	4 cut(s)	15, 216, 349, 360
MboI	GATC	4 cut(s)	13, 214, 347, 358
MboII	GAAGA	1 cut(s)	34
MluCI	AATT	3 cut(s)	111, 419, 512
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	160, 165, 256, 306, 385
MseI	TTAA	3 cut(s)	132, 308, 375
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	4 cut(s)	13, 214, 347, 358
NlaIII	CATG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	297, 394
PceI	AGGCCT	1 cut(s)	97
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	132, 308, 375
Sau3AI	GATC	4 cut(s)	13, 214, 347, 358
SchI	GAGTC	1 cut(s)	231
SetI	ASST	5 cut(s)	79, 138, 396, 442, 475
SfaNI	GCATC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	111, 419, 512
SseBI	AGGCCT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	104
StuI	AGGCCT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	165, 274
TasI	AATT	3 cut(s)	111, 419, 512
Tru1I	TTAA	3 cut(s)	132, 308, 375
Tru9I	TTAA	3 cut(s)	132, 308, 375
TseFI	GTSAC	2 cut(s)	297, 394
Tsp45I	GTSAC	2 cut(s)	297, 394
XagI	CCTNNNNNAGG	2 cut(s)	102, 409
XapI	RAATTY	2 cut(s)	111, 419
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.