Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007542

Physical Location & Seq

Genomic Coordinates Reverse (-)

64361005 .. 64364003

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGACTGTTGTATGACTTTACCTTCTGATTTACATTACTCTGGTTTTGTTGCTCCATTGATCTTGGGATTGCCTTTTGGTCCAAAATGCTTTATTTACAAGAATCTTGGATTTCTGATAAGTAAAGGCGTAGTTCAGGACTTTTATTTGGGAAGGAACCCATCCATGTTAACAGAGATGAGAGTTCTCTGCCAGTCTACTGGTGATAACGATTTGGTTCTGGACTTGGGAATAAATTTCCTGACAGATGATGATATGCTTGGAATACTTGCTATCAAGCTAAAGAAAGGCTCAGCTTTGGAATTTGGGCAAAGTTGCATATTACTGGCATGCATGTTGAAGGGAAGGCCATTCACTATACTACCAAACTACATCCTTTGCTTCTGCAATTCTAGAAGGTGCAGAGCTGATATGGAGCTATGTGGCCCGAATATTGGGACAACCATCCCTTATCGGAGAGTCTTCAAAGGGAAATACCCTTGGATTTTTGTTCAAGTCTCAACTTTGAAATGGAGCACTACTTTTGGCCTTAAGGCAACATTGTTCTGGAGAAACTTGAGAGGAGGTGGCATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

193

Amino Acids

21.52

Weight (kDa)

9.14

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500401 RchiOBHm_Chr1g0347551 RchiOBHm_Chr1g0352991 RchiOBHm_Chr2g0131621 RchiOBHm_Chr4g0391721 RchiOBHm_Chr5g0007021
rosa_laevigata	RLG00000010220
rosa_multiflora	Rmu_sc0003801.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045560 Rroxscaffold_1G00066350 Rroxscaffold_5G00374400 Rroxscaffold_7G00194740
rosa_rugosa	Rorug03G0294700 Rorug06G0151300 Rorug06G0174500 Rorug07G0267900
rosa_samantha	Rh2AG498100 Rh2BG358200 Rh2CG484200 Rh4BG175000 Rh4DG006800 Rh5DG396300 Rh6DG087400 Rh7BG461200
rosa_wichuraiana	Rw4G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	235, 302
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	340, 466, 494, 508
AluBI	AGCT	4 cut(s)	280, 296, 407, 418
AluI	AGCT	4 cut(s)	280, 296, 407, 418
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	1 cut(s)	502
AoxI	GGCC	3 cut(s)	347, 424, 526
ApoI	RAATTY	2 cut(s)	235, 302
AspS9I	GGNCC	2 cut(s)	80, 425
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	518
BccI	CCATC	2 cut(s)	169, 452
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	530
BlpI	GCTNAGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	80, 425
BmiI	GGNNCC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	568
Bpu1102I	GCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	3 cut(s)	193, 205, 330
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	3 cut(s)	161, 372, 444
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	193, 205, 330
BseRI	GAGGAG	1 cut(s)	576
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	349, 426, 528
BsiHKAI	GWGCWC	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	349, 426, 528
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	60
Bsp1720I	GCTNAGC	1 cut(s)	292
BspANI	GGCC	3 cut(s)	349, 426, 528
BspCNI	CTCAG	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	530
BsrI	ACTGG	3 cut(s)	193, 205, 330
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	161, 372, 444
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	333, 337
BstV2I	GAAGAC	1 cut(s)	454
BstXI	CCANNNNNNTGG	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	349, 426, 528
BtsCI	GGATG	3 cut(s)	161, 372, 444
Cac8I	GCNNGC	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	80, 425
CviAII	CATG	3 cut(s)	166, 330, 334
CviJI	RGCY	8 cut(s)	280, 291, 296, 349, 407, 418, 426, 528
CviKI_1	RGCY	8 cut(s)	280, 291, 296, 349, 407, 418, 426, 528
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	3 cut(s)	169, 333, 337
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	3 cut(s)	165, 329, 333
FblI	GTMKAC	1 cut(s)	197
FokI	GGATG	3 cut(s)	148, 359, 431
FspBI	CTAG	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	3 cut(s)	349, 426, 528
Hin1II	CATG	3 cut(s)	169, 333, 337
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	103, 459
HpaI	GTTAAC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	171, 198
Hpy188I	TCNGA	3 cut(s)	28, 117, 456
Hpy188III	TCNNGA	5 cut(s)	137, 221, 241, 393, 547
Hpy8I	GTNNAC	2 cut(s)	171, 198
HpyAV	CCTTC	5 cut(s)	33, 147, 334, 339, 390
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	318, 333, 387, 402
HpyF3I	CTNAG	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	169, 333, 337
KspAI	GTTAAC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	58, 415, 513
LpnPI	CCDG	8 cut(s)	27, 122, 186, 206, 206, 254, 311, 532
MaeI	CTAG	1 cut(s)	393
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	3 cut(s)	235, 302, 388
MlyI	GAGTC	1 cut(s)	468
MnlI	CCTC	2 cut(s)	554, 557
Mph1103I	ATGCAT	1 cut(s)	335
MseI	TTAA	2 cut(s)	170, 531
MspCI	CTTAAG	1 cut(s)	530
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	169, 333, 337
NlaIV	GGNNCC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	335
NspI	RCATGY	2 cut(s)	333, 337
PaeI	GCATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	80, 425
SaqAI	TTAA	2 cut(s)	170, 531
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	80, 425
SchI	GAGTC	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	7 cut(s)	25, 282, 298, 401, 409, 420, 568
SinI	GGWCC	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	530, 556
SmoI	CTYRAG	2 cut(s)	530, 556
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	3 cut(s)	235, 302, 388
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	8
TasI	AATT	3 cut(s)	235, 302, 388
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	170, 531
Tru9I	TTAA	2 cut(s)	170, 531
Vha464I	CTTAAG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	235, 302
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	2 cut(s)	333, 337
XmiI	GTMKAC	1 cut(s)	197
XspI	CTAG	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.