Rh2BG358200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007542
Physical Location & Seq
Forward (+)
49457879 .. 49523733
65855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG358200.1

Sequence Viewer

Length: 459 bp
ATGCTGGTGTCTCCTTACCCAGATACTCGCCAAGCTTCACTGCTAGCTCTTCTCAATCTCGCTGTTCGCTATGATTGGCTTGGAAATCCGGTTTCAATTGCTCGCAATAAGCTTGGAAATCTGGTTTCTTTCACAGAAGCCTTACCTTTCTGGCAAAAGCTGAAATCAATTGGGAAGCACGAACAAACAAGTGGTGACTCTGTATCCTCTACATCAAAGCCTTTAGTGCAGGATTGGGGAATGGATCTACGTAAACAAATTGGTCTCGTTTATTTGAGGATCTCCTCGAAGTGCAAAGTTGGCATCTCGCCAGGCAAAGCCAAACTTGGTTTCAGATTGGTTAAGAAGCATGAAGGACCAAATAGCATGAAACCGGAGGATCCAAACATTCTCACTTGTTTTCCCCATAAGGGTACCAAGGAAGAAGAACTAAAGATCACCATAGATGGCGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.88

Weight (kDa)

9.4

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AclWI GGATC 4 cut(s) 252, 287, 374, 387
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 1 cut(s) 96
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 35, 47, 112, 160
AluI AGCT 4 cut(s) 35, 47, 112, 160
Alw26I GTCTC 2 cut(s) 15, 269
AlwI GGATC 4 cut(s) 252, 287, 374, 387
Asp718I GGTACC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 2 cut(s) 206, 430
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 356
BamHI GGATCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 413
BccI CCATC 1 cut(s) 440
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 15, 269
BfaI CTAG 1 cut(s) 44
BfuI GTATCC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 381, 415
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 312
BmtI GCTAGC 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 2 cut(s) 88, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 410
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 89, 374
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 2 cut(s) 15, 269
Bso31I GGTCTC 1 cut(s) 269
Bsp143I GATC 4 cut(s) 244, 279, 379, 435
BspLI GGNNCC 2 cut(s) 381, 415
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 4 cut(s) 252, 287, 374, 387
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 4 cut(s) 244, 279, 379, 435
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 45, 103
BstKTI GATC 4 cut(s) 247, 282, 382, 438
BstMAI GTCTC 2 cut(s) 15, 269
BstMBI GATC 4 cut(s) 244, 279, 379, 435
BstMWI GCNNNNNNNGC 2 cut(s) 226, 300
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSNI TACGTA 1 cut(s) 251
BstX2I RGATCY 3 cut(s) 244, 279, 379
BstYI RGATCY 3 cut(s) 244, 279, 379
BsuI GTATCC 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 45, 103
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 414
CviAII CATG 2 cut(s) 350, 367
CviJI RGCY 8 cut(s) 35, 47, 79, 112, 140, 160, 220, 320
CviKI_1 RGCY 8 cut(s) 35, 47, 79, 112, 140, 160, 220, 320
CviQI GTAC 1 cut(s) 414
DpnI GATC 4 cut(s) 246, 281, 381, 437
DpnII GATC 4 cut(s) 244, 279, 379, 435
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco105I TACGTA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 353, 370
FaiI YATR 5 cut(s) 72, 351, 368, 408, 443
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 2 cut(s) 349, 366
FspBI CTAG 1 cut(s) 44
HapII CCGG 2 cut(s) 89, 374
Hin1II CATG 2 cut(s) 353, 370
HindIII AAGCTT 2 cut(s) 33, 110
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 89, 374
HphI GGTGA 2 cut(s) 206, 430
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 229, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 300
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 353, 370
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 4 cut(s) 244, 279, 379, 435
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 33, 102, 107, 136, 215, 297, 324, 387
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 194
MalI GATC 4 cut(s) 246, 281, 381, 437
MboI GATC 4 cut(s) 244, 279, 379, 435
MboII GAAGA 3 cut(s) 41, 434, 437
MfeI CAATTG 2 cut(s) 96, 168
MflI RGATCY 3 cut(s) 244, 279, 379
MluCI AATT 3 cut(s) 96, 168, 258
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 217, 270, 295, 370
MseI TTAA 1 cut(s) 342
MspI CCGG 2 cut(s) 89, 374
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 2 cut(s) 96, 168
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 226, 300
NdeII GATC 4 cut(s) 244, 279, 379, 435
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 353, 370
NlaIV GGNNCC 2 cut(s) 381, 415
NmuCI GTSAC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 54
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 381, 415
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 3 cut(s) 244, 279, 379
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 4 cut(s) 244, 279, 379, 435
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 312
SetI ASST 6 cut(s) 37, 49, 114, 148, 162, 253
SfaNI GCATC 1 cut(s) 312
SinI GGWCC 1 cut(s) 356
SnaBI TACGTA 1 cut(s) 251
Sse9I AATT 3 cut(s) 96, 168, 258
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 417
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 287
TasI AATT 3 cut(s) 96, 168, 258
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 366, 383
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 356
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.