Rh4DG006800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007542
Physical Location & Seq
Reverse (-)
1182197 .. 1185127
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG006800.1

Sequence Viewer

Length: 420 bp
ATGCCTACCATGATTGTCAAGTTTCGCGATGCCTTTAGAAAAGATAGTCCCCTTTTTTTCCCTTTTCTCGCTCTCCTCACTGTGAGCTCTTTACCTGATTTAGGACTTGGGCTCTGCTATTGCAGTAAGTATCAAAACCAGGGACTCAGAAACATAGAGAGAGATGGGTTGAGACAGGGATCAACTGAGAAGGAGGGGATAGATTTTATCACATTATGGAGTTCATTAGACACACTTGACCTGATTGTTTTGCGTTTTGATTGGGTCCAGTTTAGGTTCTGGGCGATTGGTTGGGCTGATTGGGAAAAGGTGAAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCAATTGCTCGCAATAAGCTTGGAAATCTGGTTTCTTTCACAGAAGGCATTGAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.26

Weight (kDa)

8.6

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AclWI GGATC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 3 cut(s) 329, 362, 412
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 87, 378
AluI AGCT 2 cut(s) 87, 378
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 89, 114
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 160, 177
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 2 cut(s) 33, 156
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 33, 156
Bsp1286I GDGCHC 2 cut(s) 89, 114
Bsp143I GATC 1 cut(s) 179
Bsp68I TCGCGA 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 159, 178
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 146, 186, 321
BstENI CCTNNNNNAGG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstUI CGCG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 78
BtuMI TCGCGA 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 265
CviAII CATG 1 cut(s) 10
CviJI RGCY 5 cut(s) 87, 112, 296, 345, 378
CviKI_1 RGCY 5 cut(s) 87, 112, 296, 345, 378
DdeI CTNAG 3 cut(s) 146, 186, 321
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 89, 114
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 138
EcoT38I GRGCYC 2 cut(s) 89, 114
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 155, 217
FaqI GGGAC 2 cut(s) 33, 156
FatI CATG 1 cut(s) 9
FriOI GRGCYC 2 cut(s) 89, 114
HapII CCGG 1 cut(s) 355
Hin1II CATG 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 184, 397
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 123
HpyF3I CTNAG 3 cut(s) 146, 186, 321
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 9 cut(s) 108, 125, 152, 161, 254, 265, 281, 368, 373
LweI GCATC 1 cut(s) 19
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 89, 114
MluCI AATT 2 cut(s) 329, 362
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 2 cut(s) 86, 187
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 27
NdeII GATC 1 cut(s) 179
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 266
NruI TCGCGA 1 cut(s) 27
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 265
RruI TCGCGA 1 cut(s) 27
SacI GAGCTC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 2 cut(s) 89, 114
SetI ASST 7 cut(s) 89, 97, 243, 278, 312, 327, 380
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 1 cut(s) 265
Sse9I AATT 2 cut(s) 329, 362
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 82
TasI AATT 2 cut(s) 329, 362
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.