Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007542

Physical Location & Seq

Genomic Coordinates Reverse (-)

62325163 .. 62349119

Gene Structure 23957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG396300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGGGGAAATCATACCAGAGGTTCCCTTGGGTGAAAATAAGTGAAATCAGGCACGATTACCTCAAGTTCAAGCTCTGCGACACCGACAGGAGCGTGGCCAACGACCTTCGGAGCGTGATGATCGCTGAGGTCCCGACCGTCTCCATCGACCTCATCGAGATGAGCATGCAATTCTCACGTCACTGCGACGCCTGCGACGGTGATGGCCAGTGCGAGTACTACTCCGTTGAGTTTAACCTCCGCGCTCGCTACCACTTTGACCAAACCCTAGATGTCACCAGCAAGGAACTCCTCAGCTCCGACCACACCGTCGTCCTTCAATTTCTGCGACGCCTCCAGTTAAGAAGCTTCCGAACAGAGTTTTCTAAGGTTGAATTTCTCCCAAAAGGCTTGGAAATCTGGTTTCAATTGCTCGCAATACGCTTGGAAATCTGGTTTCTTTCACAGAAGGATGGGAGAGTTTCAAGGGAAAAGGCAACTTTGCTTCGGAATCTTGATCATCGCATCTCAAGCTATTCATCTGTGGAGAGATTACTCCTGAGATCGGAAAGATGGGCAGCTTGGAAGGTCTCCGAGGACCAGCATGGACTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

199

Amino Acids

23.6

Weight (kDa)

7.01

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500401 RchiOBHm_Chr1g0347551 RchiOBHm_Chr1g0352991 RchiOBHm_Chr2g0131621 RchiOBHm_Chr4g0391721 RchiOBHm_Chr5g0007021
rosa_laevigata	RLG00000010220
rosa_multiflora	Rmu_sc0003801.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045560 Rroxscaffold_1G00066350 Rroxscaffold_5G00374400 Rroxscaffold_7G00194740
rosa_rugosa	Rorug03G0294700 Rorug06G0151300 Rorug06G0174500 Rorug07G0267900
rosa_samantha	Rh2AG498100 Rh2BG358200 Rh2CG484200 Rh4BG175000 Rh4DG006800 Rh5DG396300 Rh6DG087400 Rh7BG461200
rosa_wichuraiana	Rw4G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	244
AcoI	YGGCCR	2 cut(s)	99, 208
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	192, 334
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	73, 323, 377, 410, 468
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	5 cut(s)	76, 300, 351, 516, 563
AluI	AGCT	5 cut(s)	76, 300, 351, 516, 563
Alw26I	GTCTC	2 cut(s)	148, 577
AoxI	GGCC	2 cut(s)	99, 208
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	133, 580
AsuHPI	GGTGA	3 cut(s)	46, 215, 271
AvaII	GGWCC	2 cut(s)	133, 580
BalI	TGGCCA	2 cut(s)	101, 210
BbvCI	CCTCAGC	2 cut(s)	129, 296
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	4 cut(s)	155, 200, 449, 549
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	148, 577
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
BmcAI	AGTACT	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	133, 580
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	133, 580
BmiI	GGNNCC	2 cut(s)	26, 135
BmsI	GCATC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	2 cut(s)	323, 578
Bpu10I	CCTNAGC	2 cut(s)	129, 296
BpuEI	CTTGAG	2 cut(s)	50, 496
BsaHI	GRCGYC	2 cut(s)	192, 334
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	29, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse1I	ACTGG	3 cut(s)	211, 340, 595
BseDI	CCNNGG	2 cut(s)	29, 576
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	120, 310, 533
BseNI	ACTGG	3 cut(s)	211, 340, 595
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	101, 210
BsiEI	CGRYCG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	2 cut(s)	148, 577
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	101, 210
Bso31I	GGTCTC	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	123, 499, 545
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	2 cut(s)	101, 210
BspCNI	CTCAG	3 cut(s)	121, 309, 534
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	26, 135
BspTNI	GGTCTC	1 cut(s)	577
BsrI	ACTGG	3 cut(s)	211, 340, 595
BssECI	CCNNGG	2 cut(s)	29, 576
BssMI	GATC	3 cut(s)	123, 499, 545
BssNI	GRCGYC	2 cut(s)	192, 334
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	142, 203, 313
BstACI	GRCGYC	2 cut(s)	192, 334
BstC8I	GCNNGC	4 cut(s)	170, 196, 250, 417
BstDEI	CTNAG	4 cut(s)	129, 296, 369, 542
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	126, 502, 548
BstMAI	GTCTC	2 cut(s)	148, 577
BstMBI	GATC	3 cut(s)	123, 499, 545
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 513
BstNSI	RCATGY	1 cut(s)	172
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	101, 210
BtgZI	GCGATG	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	184, 218
Cac8I	GCNNGC	4 cut(s)	170, 196, 250, 417
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	133, 580
CseI	GACGC	2 cut(s)	200, 342
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	169, 587
CviJI	RGCY	8 cut(s)	76, 101, 210, 300, 351, 393, 516, 563
CviKI_1	RGCY	8 cut(s)	76, 101, 210, 300, 351, 393, 516, 563
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	129, 296, 369, 542
DpnI	GATC	3 cut(s)	125, 501, 547
DpnII	GATC	3 cut(s)	123, 499, 545
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	99, 208
Eco130I	CCWWGG	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	133, 580
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	2 cut(s)	172, 590
FaiI	YATR	3 cut(s)	16, 170, 588
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	168, 586
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	561
GsuI	CTGGAG	2 cut(s)	323, 578
HaeIII	GGCC	2 cut(s)	101, 210
HgaI	GACGC	2 cut(s)	200, 342
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	2 cut(s)	192, 334
Hin1II	CATG	2 cut(s)	172, 590
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	2 cut(s)	493, 591
HphI	GGTGA	3 cut(s)	46, 215, 271
Hpy188I	TCNGA	6 cut(s)	114, 304, 356, 492, 550, 577
Hpy188III	TCNNGA	4 cut(s)	136, 160, 497, 541
Hpy99I	CGWCG	4 cut(s)	194, 203, 317, 336
HpyAV	CCTTC	4 cut(s)	119, 329, 445, 562
HpyCH4III	ACNGT	3 cut(s)	142, 203, 313
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 513
HpyF3I	CTNAG	4 cut(s)	129, 296, 369, 542
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	192, 334
Hsp92II	CATG	2 cut(s)	172, 590
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	123, 499, 545
LmnI	GCTCC	3 cut(s)	93, 114, 305
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	182, 277
MalI	GATC	3 cut(s)	125, 501, 547
MboI	GATC	3 cut(s)	123, 499, 545
MfeI	CAATTG	1 cut(s)	410
MlsI	TGGCCA	2 cut(s)	101, 210
MluCI	AATT	4 cut(s)	173, 323, 377, 410
MluNI	TGGCCA	2 cut(s)	101, 210
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	8 cut(s)	15, 74, 124, 164, 251, 305, 347, 571
Mox20I	TGGCCA	2 cut(s)	101, 210
MscI	TGGCCA	2 cut(s)	101, 210
MseI	TTAA	2 cut(s)	237, 344
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	2 cut(s)	101, 210
MunI	CAATTG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	195, 513
NdeII	GATC	3 cut(s)	123, 499, 545
NlaIII	CATG	2 cut(s)	172, 590
NlaIV	GGNNCC	2 cut(s)	26, 135
NmuCI	GTSAC	2 cut(s)	182, 277
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	26, 135
PspPI	GGNCC	2 cut(s)	133, 580
PspPPI	RGGWCCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	237, 344
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	3 cut(s)	123, 499, 545
Sau96I	GGNCC	2 cut(s)	133, 580
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	516
SinI	GGWCC	2 cut(s)	133, 580
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	65, 511
SmoI	CTYRAG	2 cut(s)	65, 511
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	4 cut(s)	173, 323, 377, 410
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	142, 203, 313
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	150, 159
TasI	AATT	4 cut(s)	173, 323, 377, 410
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	237, 344
Tru9I	TTAA	2 cut(s)	237, 344
TscAI	CASTG	2 cut(s)	191, 218
TseFI	GTSAC	2 cut(s)	182, 277
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	182, 277
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	191, 218
VpaK11BI	GGWCC	2 cut(s)	133, 580
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.