Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007542

Physical Location & Seq

Genomic Coordinates Reverse (-)

27201731 .. 27207939

Gene Structure 6209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0174500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAACGCTGAACCTCCTCAAAAATCTGGTGGTGGTAGGGGTCGTGGTGGAAGAGGCAGAGATGCTGGACGTGGTGGATTTATGAATTTTGGTGAAAGGAGAAAAGGAGAAAAGGAACTTCCTGAAGGTGCTCCAAATTGTTTAGCTGGTGTAACTTTTGTAATCCGTGGTACACTTGACAGTTTGGAAAGAGAGGAGGCAGAGGATTTGATAAAACGCCATGGTGGTGTTACTGGATCTGTCAGCAAAAAAACGGTAAATGCACATGACAGTCGTGGGAAAGCTGATTCCAAGATTGTCAAGGGAATTGGTGGAAGCAATGCAAATTCTATTAAAGAGCTTGTCAGCAATGAGTCCCTAAGCATGGATAGATCTAAGCATTCCAAAACTGTACTTGTTATGGATGAGGTTGATGGGATGTCTGCTGGTGATAGGGGTGGAGTCACTGATCTTATTGCTAGCATAAAGAGTTCTAAAATTCCTATTATCTGCATTTGCAATGATTGTTACAGTCTGAAACTGAAGAGTCTTGTCAACTACTGTTTGCTTCTCAGCTTCTGCAAGCCTAATAAACAACAGATGGCAGAGATGTCGAATCAAGTTGAAAATGCTGAAGGCCTTCAAGTGAATGAGATTGCTCTTAAGGAACTTAAAGAAAGAGTCAACAGAGACATGCGAATTGCACTTAACCAGTTGCAGTATATGAGTCTCTCAATGTCTGTCATAAGATATGAAAATGCTGTTTGGTTTCAATCTGGAAATTTGCGGATGGATGAGCGGGTTGACATGAGCATGAGCGATCCAGATCTTGTCCTCTTCTTATTCAGGTTGTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022607 GO:0031503 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048278 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C Vps51

Protein Analysis

279

Amino Acids

30.67

Weight (kDa)

8.68

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	45 - 85	8.2e-08	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007542)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500401 RchiOBHm_Chr1g0347551 RchiOBHm_Chr1g0352991 RchiOBHm_Chr2g0131621 RchiOBHm_Chr4g0391721 RchiOBHm_Chr5g0007021
rosa_laevigata	RLG00000010220
rosa_multiflora	Rmu_sc0003801.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045560 Rroxscaffold_1G00066350 Rroxscaffold_5G00374400 Rroxscaffold_7G00194740
rosa_rugosa	Rorug03G0294700 Rorug06G0151300 Rorug06G0174500 Rorug07G0267900
rosa_samantha	Rh2AG498100 Rh2BG358200 Rh2CG484200 Rh4BG175000 Rh4DG006800 Rh5DG396300 Rh6DG087400 Rh7BG461200
rosa_wichuraiana	Rw4G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	778
AciI	CCGC	2 cut(s)	766, 778
AclWI	GGATC	2 cut(s)	244, 794
AcsI	RAATTY	4 cut(s)	85, 325, 477, 760
AcuI	CTGAAG	3 cut(s)	144, 542, 633
AfaI	GTAC	2 cut(s)	172, 393
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	605, 623, 752
AjiI	CACGTC	1 cut(s)	71
AluBI	AGCT	4 cut(s)	146, 284, 340, 555
AluI	AGCT	4 cut(s)	146, 284, 340, 555
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	663, 713
AlwI	GGATC	2 cut(s)	244, 794
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	616
ApoI	RAATTY	4 cut(s)	85, 325, 477, 760
Asp700I	GAANNNNTTC	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	104, 440
AsuNHI	GCTAGC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	3 cut(s)	407, 574, 763
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BcoDI	GTCTC	2 cut(s)	663, 713
BfaI	CTAG	1 cut(s)	459
BfrI	CTTAAG	1 cut(s)	641
BglII	AGATCT	2 cut(s)	371, 805
BmgBI	CACGTC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	166, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	238, 691
Bse3DI	GCAATG	3 cut(s)	325, 355, 505
Bse8I	GATNNNNATC	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	166, 220
BseGI	GGATG	4 cut(s)	409, 423, 774, 778
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	3 cut(s)	325, 355, 505
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	2 cut(s)	238, 691
BseRI	GAGGAG	2 cut(s)	6, 209
BshFI	GGCC	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	2 cut(s)	663, 713
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	5 cut(s)	236, 371, 448, 799, 805
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	2 cut(s)	766, 778
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	564
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	2 cut(s)	244, 794
BspTI	CTTAAG	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	778
BsrDI	GCAATG	3 cut(s)	325, 355, 505
BsrI	ACTGG	2 cut(s)	238, 691
BssECI	CCNNGG	2 cut(s)	166, 220
BssMI	GATC	5 cut(s)	236, 371, 448, 799, 805
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	6 cut(s)	182, 256, 272, 391, 512, 542
Bst6I	CTCTTC	3 cut(s)	46, 518, 821
BstAFI	CTTAAG	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	460, 563
BstDEI	CTNAG	3 cut(s)	359, 375, 551
BstDSI	CCRYGG	2 cut(s)	166, 220
BstF5I	GGATG	4 cut(s)	409, 423, 774, 778
BstKTI	GATC	5 cut(s)	239, 374, 451, 802, 808
BstMAI	GTCTC	2 cut(s)	663, 713
BstMBI	GATC	5 cut(s)	236, 371, 448, 799, 805
BstNSI	RCATGY	1 cut(s)	676
BstX2I	RGATCY	3 cut(s)	236, 371, 805
BstYI	RGATCY	3 cut(s)	236, 371, 805
BsuRI	GGCC	1 cut(s)	618
BtgI	CCRYGG	2 cut(s)	166, 220
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	409, 423, 774, 778
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	460, 563
CaiI	CAGNNNCTG	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	171, 392
CviAII	CATG	6 cut(s)	221, 266, 364, 673, 787, 793
CviJI	RGCY	6 cut(s)	146, 284, 340, 555, 565, 618
CviKI_1	RGCY	6 cut(s)	146, 284, 340, 555, 565, 618
CviQI	GTAC	2 cut(s)	171, 392
DdeI	CTNAG	3 cut(s)	359, 375, 551
DpnI	GATC	5 cut(s)	238, 373, 450, 801, 807
DpnII	GATC	5 cut(s)	236, 371, 448, 799, 805
Eam1104I	CTCTTC	3 cut(s)	46, 518, 821
EarI	CTCTTC	3 cut(s)	46, 518, 821
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	618
Eco57I	CTGAAG	3 cut(s)	144, 542, 633
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	6 cut(s)	224, 269, 367, 676, 790, 796
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	6 cut(s)	220, 265, 363, 672, 786, 792
FauI	CCCGC	1 cut(s)	771
FokI	GGATG	4 cut(s)	416, 430, 781, 785
FspBI	CTAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	618
Hin1II	CATG	6 cut(s)	224, 269, 367, 676, 790, 796
HincII	GTYRAC	3 cut(s)	535, 664, 784
HindII	GTYRAC	3 cut(s)	535, 664, 784
HinfI	GANTC	7 cut(s)	287, 353, 441, 526, 595, 660, 706
HphI	GGTGA	2 cut(s)	104, 440
Hpy166II	GTNNAC	4 cut(s)	173, 535, 664, 784
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	3 cut(s)	122, 756, 803
Hpy8I	GTNNAC	4 cut(s)	173, 535, 664, 784
HpyAV	CCTTC	3 cut(s)	119, 608, 629
HpyCH4III	ACNGT	6 cut(s)	182, 256, 272, 391, 512, 542
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	7 cut(s)	263, 323, 492, 498, 561, 683, 697
HpyF3I	CTNAG	3 cut(s)	359, 375, 551
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	224, 269, 367, 676, 790, 796
Kzo9I	GATC	5 cut(s)	236, 371, 448, 799, 805
LmnI	GCTCC	1 cut(s)	136
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	4 cut(s)	151, 229, 442, 506
MalI	GATC	5 cut(s)	238, 373, 450, 801, 807
MbiI	CCGCTC	1 cut(s)	778
MboI	GATC	5 cut(s)	236, 371, 448, 799, 805
MboII	GAAGA	3 cut(s)	63, 535, 808
MflI	RGATCY	3 cut(s)	236, 371, 805
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	7 cut(s)	85, 136, 306, 325, 477, 678, 760
MlyI	GAGTC	5 cut(s)	362, 450, 535, 669, 715
MnlI	CCTC	8 cut(s)	24, 27, 47, 187, 190, 196, 400, 824
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	4 cut(s)	333, 642, 651, 687
MslI	CAYNNNNRTG	2 cut(s)	225, 791
MspCI	CTTAAG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	5 cut(s)	236, 371, 448, 799, 805
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	6 cut(s)	224, 269, 367, 676, 790, 796
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	618
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	287, 595
PleI	GAGTC	5 cut(s)	361, 449, 534, 668, 714
PpsI	GAGTC	5 cut(s)	361, 449, 534, 668, 714
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	3 cut(s)	236, 371, 805
RsaI	GTAC	2 cut(s)	172, 393
RsaNI	GTAC	2 cut(s)	171, 392
RseI	CAYNNNNRTG	2 cut(s)	225, 791
SaqAI	TTAA	4 cut(s)	333, 642, 651, 687
Sau3AI	GATC	5 cut(s)	236, 371, 448, 799, 805
SchI	GAGTC	5 cut(s)	362, 450, 535, 669, 715
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	9 cut(s)	16, 73, 130, 148, 286, 342, 411, 557, 830
SfaNI	GCATC	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	225, 791
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	7 cut(s)	85, 136, 306, 325, 477, 678, 760
SseBI	AGGCCT	1 cut(s)	618
SsiI	CCGC	2 cut(s)	766, 778
SspMI	CTAG	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	618
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	6 cut(s)	182, 256, 272, 391, 512, 542
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	593
TasI	AATT	7 cut(s)	85, 136, 306, 325, 477, 678, 760
TatI	WGTACW	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	287, 595
Tru1I	TTAA	4 cut(s)	333, 642, 651, 687
Tru9I	TTAA	4 cut(s)	333, 642, 651, 687
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	17, 98, 747
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	451
Vha464I	CTTAAG	1 cut(s)	641
XapI	RAATTY	4 cut(s)	85, 325, 477, 760
XceI	RCATGY	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.